UHGV-0142975

Genome information

Genome length 36,327 bps

CDS count 59

Completeness 99.90% (high-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0142975
vOTU ID	vOTU-011113
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_442477
BioSample	SAMN05971736
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.86
Jumbo phage	No

Genome content
Genome length	36,327 bps
GC content	43.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	92.37%
Average CDS length	574.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0142975_1	eggNOG-mapper	411468.CLOSCI_02410	NA	NA
UHGV-0142975_2	PHROG	phrog_538	minor tail protein	tail
UHGV-0142975_2	UniRef90	UniRef90_UPI001D071BA3	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0142975_2	eggNOG-mapper	665950.HMPREF1025_02520	NA	NA
UHGV-0142975_2	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0142975_2	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0142975_3	PHROG	phrog_9994	NA	unknown function
UHGV-0142975_3	UniRef90	UniRef90_A0A845KHH7	H_lectin domain-containing protein	NA
UHGV-0142975_3	eggNOG-mapper	742723.HMPREF9477_00894	NA	NA
UHGV-0142975_3	Structural annotation	PF20747	NA	NA
UHGV-0142975_5	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0142975_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0142975_5	UniRef90	UniRef90_UPI00156FF4F8	tyrosine-type recombinase/integrase	NA
UHGV-0142975_5	eggNOG-mapper	411461.DORFOR_00731	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0142975_5	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0142975_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0142975_5	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0142975_5	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0142975_6	PHROG	phrog_12931	NA	unknown function
UHGV-0142975_6	eggNOG-mapper	742765.HMPREF9457_03370	NA	NA
UHGV-0142975_7	eggNOG-mapper	411461.DORFOR_01181	NA	NA
UHGV-0142975_9	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0142975_10	PHROG	phrog_199	holin	lysis
UHGV-0142975_10	UniRef90	UniRef90_B0G4J9	Toxin secretion/phage lysis holin	NA
UHGV-0142975_10	eggNOG-mapper	411461.DORFOR_01186	Bacteriophage holin family	NA
UHGV-0142975_10	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0142975_10	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0142975_10	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0142975_10	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0142975_11	PHROG	phrog_2742	endolysin	lysis
UHGV-0142975_11	UniRef90	UniRef90_A0A1C5W4I4	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0142975_11	eggNOG-mapper	97139.C824_00247	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0142975_11	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0142975_11	Pfam	PF05036	SPOR domain	SPOR
UHGV-0142975_11	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0142975_11	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-0142975_12	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0142975_12	PHROG	phrog_95	integrase	integration and excision
UHGV-0142975_12	UniRef90	UniRef90_UPI00156F85ED	recombinase family protein	NA
UHGV-0142975_12	eggNOG-mapper	411461.DORFOR_00037	Resolvase, N terminal domain	NA
UHGV-0142975_12	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0142975_12	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0142975_12	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0142975_12	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0142975_13	PHROG	phrog_7115	NA	unknown function
UHGV-0142975_13	UniRef90	UniRef90_UPI000C770A7A	PH domain-containing protein	NA
UHGV-0142975_13	eggNOG-mapper	411468.CLOSCI_00675	Bacterial PH domain	NA
UHGV-0142975_13	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0142975_13	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-0142975_14	PHROG	phrog_20886	NA	unknown function
UHGV-0142975_14	UniRef90	UniRef90_UPI000C757FC8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0142975_14	eggNOG-mapper	411462.DORLON_00820	NA	NA
UHGV-0142975_14	Structural annotation	PF06114	NA	NA
UHGV-0142975_15	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0142975_15	UniRef90	UniRef90_A0A1C5UMT2	Helix-turn-helix domain	NA
UHGV-0142975_15	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0142975_15	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0142975_15	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0142975_15	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0142975_16	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-0142975_16	UniRef90	UniRef90_A0A1C5ULV0	Helix-turn-helix domain	NA
UHGV-0142975_16	eggNOG-mapper	1158610.UC3_02386	Helix-turn-helix XRE-family like proteins	NA
UHGV-0142975_16	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0142975_16	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0142975_16	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0142975_24	PHROG	phrog_3777	NA	unknown function
UHGV-0142975_24	UniRef90	UniRef90_A0A6L8RVX0	NA	NA
UHGV-0142975_24	eggNOG-mapper	411462.DORLON_00813	NA	NA
UHGV-0142975_24	Pfam	PF12957	NA	DUF3846
UHGV-0142975_25	PHROG	phrog_674	NA	unknown function
UHGV-0142975_25	UniRef90	UniRef90_UPI00156E73A9	NA	NA
UHGV-0142975_25	eggNOG-mapper	658655.HMPREF0988_02587	NA	NA
UHGV-0142975_25	Pfam	PF07083	NA	DUF1351
UHGV-0142975_25	Structural annotation	PF07083	NA	NA
UHGV-0142975_26	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0142975_26	UniRef90	UniRef90_A0A1C5ULR1	ERF superfamily	NA
UHGV-0142975_26	eggNOG-mapper	411460.RUMTOR_02066	ERF superfamily	NA
UHGV-0142975_26	Pfam	PF04404	ERF superfamily	ERF
UHGV-0142975_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0142975_26	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0142975_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0142975_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0142975_27	UniRef90	UniRef90_A0A1C5UKS1	Single-stranded DNA-binding protein	NA
UHGV-0142975_27	eggNOG-mapper	411460.RUMTOR_02067	NA	NA
UHGV-0142975_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0142975_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0142975_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0142975_27	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0142975_27	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0142975_28	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0142975_28	UniRef90	UniRef90_A0A1C5UKT4	ERCC4 domain-containing protein	NA
UHGV-0142975_28	eggNOG-mapper	658655.HMPREF0988_02583	ERCC4 domain	NA
UHGV-0142975_28	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0142975_28	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0142975_29	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0142975_29	PHROG	phrog_11992	NA	unknown function
UHGV-0142975_29	UniRef90	UniRef90_A0A6L8RVS7	DNA primase	NA
UHGV-0142975_29	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-0142975_29	PADLOC	drt-UG29	DRT	DRT
UHGV-0142975_29	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0142975_29	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0142975_29	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0142975_30	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0142975_30	UniRef90	UniRef90_A0A1C5UL65	Superfamily II helicase and inactivated derivatives	NA
UHGV-0142975_30	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0142975_30	Pfam	PF06048	NA	DUF927
UHGV-0142975_30	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0142975_30	COG	COG5519	NA	NA
UHGV-0142975_30	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0142975_31	PHROG	phrog_23374	NA	unknown function
UHGV-0142975_33	PHROG	phrog_3253	NA	unknown function
UHGV-0142975_33	UniRef90	UniRef90_A0A355KVS1	Resolvase	NA
UHGV-0142975_33	eggNOG-mapper	411461.DORFOR_00013	NA	NA
UHGV-0142975_34	UniRef90	UniRef90_R6ZHB9	Putative bacteriocin ABC transporter	NA
UHGV-0142975_34	eggNOG-mapper	742733.HMPREF9469_02894	NA	NA
UHGV-0142975_34	Structural annotation	PF19962, COG1579	NA	NA
UHGV-0142975_36	PHROG	phrog_26445	NA	unknown function
UHGV-0142975_36	eggNOG-mapper	97139.C824_05982	NA	NA
UHGV-0142975_36	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0142975_36	Structural annotation	PF00196	NA	NA
UHGV-0142975_37	PHROG	phrog_15198	NA	unknown function
UHGV-0142975_37	UniRef90	UniRef90_A0A395YD47	NA	NA
UHGV-0142975_37	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0142975_37	Pfam	PF04448	NA	DUF551
UHGV-0142975_39	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0142975_39	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0142975_39	UniRef90	UniRef90_A0A396PTY1	Methyltransferase	NA
UHGV-0142975_39	eggNOG-mapper	1214217.ALNF01000014_gene1390	N-4 methylation of cytosine	NA
UHGV-0142975_39	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0142975_39	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0142975_39	COG	COG0863	DNA modification methylase	NA
UHGV-0142975_39	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0142975_41	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0142975_41	UniRef90	UniRef90_A0A412MDT8	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0142975_41	eggNOG-mapper	411462.DORLON_00800	NA	NA
UHGV-0142975_41	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0142975_41	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0142975_43	PHROG	phrog_2412	NA	unknown function
UHGV-0142975_43	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-0142975_43	eggNOG-mapper	742765.HMPREF9457_02118	NA	NA
UHGV-0142975_44	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0142975_44	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0142975_44	UniRef90	UniRef90_A0A395YD55	PBSX family phage terminase large subunit	NA
UHGV-0142975_44	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-0142975_44	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0142975_44	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0142975_44	COG	COG1783	Phage terminase large subunit	NA
UHGV-0142975_44	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0142975_45	PHROG	phrog_533	portal protein	head and packaging
UHGV-0142975_45	UniRef90	UniRef90_A0A374BVV6	Phage portal protein	NA
UHGV-0142975_45	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0142975_45	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0142975_45	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0142975_46	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0142975_46	UniRef90	UniRef90_UPI000C7906A1	phage minor capsid protein	NA
UHGV-0142975_46	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0142975_46	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0142975_46	COG	COG2369	NA	NA
UHGV-0142975_46	Structural annotation	PF06152	NA	NA
UHGV-0142975_48	KOfam	K07584	NA	NA
UHGV-0142975_48	PHROG	phrog_4478	peptidase	other
UHGV-0142975_48	UniRef90	UniRef90_A0A395YF67	Ribosomal-processing cysteine protease Prp	NA
UHGV-0142975_48	eggNOG-mapper	476272.RUMHYD_02852	Cysteine protease Prp	NA
UHGV-0142975_48	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0142975_48	COG	COG2868	NA	NA
UHGV-0142975_48	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0142975_49	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0142975_50	PHROG	phrog_267	major head protein	head and packaging
UHGV-0142975_50	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0142975_50	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0142975_50	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0142975_51	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0142975_51	UniRef90	UniRef90_R5RS10	Protein gp8	NA
UHGV-0142975_51	eggNOG-mapper	1449343.JQLQ01000002_gene1331	NA	NA
UHGV-0142975_52	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0142975_52	UniRef90	UniRef90_UPI001915CA83	putative minor capsid protein	NA
UHGV-0142975_52	eggNOG-mapper	1449343.JQLQ01000002_gene1330	Minor capsid protein	NA
UHGV-0142975_52	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0142975_52	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0142975_52	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0142975_53	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0142975_53	UniRef90	UniRef90_UPI001915D4D5	minor capsid protein	NA
UHGV-0142975_53	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0142975_53	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0142975_54	UniRef90	UniRef90_UPI001D058B7D	minor capsid protein	NA
UHGV-0142975_54	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0142975_54	Structural annotation	PF12691	NA	NA
UHGV-0142975_55	PHROG	phrog_820	major tail protein	tail
UHGV-0142975_55	UniRef90	UniRef90_A0A3R6YSE8	Capsid protein	NA
UHGV-0142975_55	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0142975_55	COG	COG5492	NA	NA
UHGV-0142975_55	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0142975_56	Structural annotation	PF10666	NA	NA
UHGV-0142975_57	PHROG	phrog_706	NA	unknown function
UHGV-0142975_57	UniRef90	UniRef90_UPI0008360889	Gp15 family bacteriophage protein	NA
UHGV-0142975_57	eggNOG-mapper	665959.HMPREF1013_00192	Bacteriophage Gp15 protein	NA
UHGV-0142975_57	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0142975_57	Structural annotation	PF06854	NA	NA
UHGV-0142975_58	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0142975_58	UniRef90	UniRef90_A0A395YDC3	PhageMin_Tail domain-containing protein	NA
UHGV-0142975_58	eggNOG-mapper	428125.CLOLEP_00174	tail tape measure protein, TP901	NA
UHGV-0142975_58	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0142975_58	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0142975_58	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0142975_59	UniRef90	UniRef90_UPI0015709E93	phage tail protein	NA
UHGV-0142975_59	eggNOG-mapper	411468.CLOSCI_02410	NA	NA