UHGV-0142990

Genome information

Genome length 32,654 bps

CDS count 52

Completeness 87.41% (medium-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0142990
vOTU ID	vOTU-031374
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_398065
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.41% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.07
Jumbo phage	No

Genome content
Genome length	32,654 bps
GC content	41.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	92.35%
Average CDS length	583.21 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0142990_1	UniRef90	UniRef90_A0A2N5P5C9	Transcriptional regulator	NA
UHGV-0142990_1	eggNOG-mapper	1121289.JHVL01000079_gene1187	Helix-turn-helix XRE-family like proteins	NA
UHGV-0142990_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0142990_1	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0142990_2	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0142990_2	UniRef90	UniRef90_UPI000E4A5456	Rha family transcriptional regulator	NA
UHGV-0142990_2	eggNOG-mapper	1304866.K413DRAFT_3063	TIGRFAM phage regulatory protein, Rha family	NA
UHGV-0142990_2	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0142990_2	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0142990_2	COG	COG3617	Prophage antirepressor	NA
UHGV-0142990_2	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0142990_7	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0142990_7	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0142990_7	UniRef90	UniRef90_A0A2N5P5D9	AntA domain-containing protein	NA
UHGV-0142990_7	eggNOG-mapper	1408823.AXUS01000009_gene1978	AntA/AntB antirepressor	NA
UHGV-0142990_7	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0142990_7	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0142990_7	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-0142990_9	Structural annotation	PF10743, NF040990, COG3311	NA	NA
UHGV-0142990_13	PHROG	phrog_30234	NA	unknown function
UHGV-0142990_13	eggNOG-mapper	411461.DORFOR_00021	NA	NA
UHGV-0142990_15	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0142990_15	UniRef90	UniRef90_A0A6N2RMY2	ERF superfamily protein	NA
UHGV-0142990_15	eggNOG-mapper	1484479.DI14_04910	ERF superfamily	NA
UHGV-0142990_15	Pfam	PF04404	ERF superfamily	ERF
UHGV-0142990_15	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0142990_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0142990_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0142990_16	UniRef90	UniRef90_A0A1C5QS41	Single-stranded DNA-binding protein	NA
UHGV-0142990_16	eggNOG-mapper	411460.RUMTOR_02067	NA	NA
UHGV-0142990_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0142990_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0142990_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0142990_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0142990_16	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0142990_17	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0142990_17	UniRef90	UniRef90_A0A1C5UKT4	ERCC4 domain-containing protein	NA
UHGV-0142990_17	eggNOG-mapper	658655.HMPREF0988_02583	ERCC4 domain	NA
UHGV-0142990_17	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0142990_17	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0142990_18	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0142990_18	PHROG	phrog_11992	NA	unknown function
UHGV-0142990_18	UniRef90	UniRef90_UPI00156FEB22	CHC2 zinc finger domain-containing protein	NA
UHGV-0142990_18	eggNOG-mapper	1304866.K413DRAFT_0824	CHC2 zinc finger	NA
UHGV-0142990_18	PADLOC	drt-UG29	DRT	DRT
UHGV-0142990_18	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0142990_18	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0142990_18	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0142990_19	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0142990_19	UniRef90	UniRef90_UPI00156EF603	NA	NA
UHGV-0142990_19	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0142990_19	Pfam	PF06048	NA	DUF927
UHGV-0142990_19	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0142990_19	COG	COG5519	NA	NA
UHGV-0142990_19	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0142990_21	PHROG	phrog_23374	NA	unknown function
UHGV-0142990_21	eggNOG-mapper	1256908.HMPREF0373_00664	NA	NA
UHGV-0142990_22	Structural annotation	NF041290	NA	NA
UHGV-0142990_23	PHROG	phrog_17690	NA	unknown function
UHGV-0142990_23	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0142990_23	eggNOG-mapper	665950.HMPREF1025_02546	NA	NA
UHGV-0142990_25	PHROG	phrog_10714	NA	unknown function
UHGV-0142990_25	UniRef90	UniRef90_R6RDV7	DNA polymerase II large subunit	NA
UHGV-0142990_28	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0142990_28	UniRef90	UniRef90_R6H304	AP2 domain-containing protein	NA
UHGV-0142990_28	eggNOG-mapper	411462.DORLON_00791	NA	NA
UHGV-0142990_29	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-0142990_31	PHROG	phrog_7024	NA	unknown function
UHGV-0142990_31	eggNOG-mapper	994573.T472_0211090	NA	NA
UHGV-0142990_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0142990_32	UniRef90	UniRef90_A0A412MDT8	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0142990_32	eggNOG-mapper	411462.DORLON_00800	NA	NA
UHGV-0142990_32	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0142990_32	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0142990_33	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0142990_33	UniRef90	UniRef90_A0A3E4V813	HNH endonuclease	NA
UHGV-0142990_33	eggNOG-mapper	1232453.BAIF02000028_gene2717	HNH nucleases	NA
UHGV-0142990_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0142990_34	Structural annotation	PF04320, MF_00360, NF008333, COG3171	NA	NA
UHGV-0142990_35	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0142990_35	UniRef90	UniRef90_UPI001D0DE0A6	P27 family phage terminase small subunit	NA
UHGV-0142990_35	eggNOG-mapper	1158604.I591_01771	Phage terminase, small subunit	NA
UHGV-0142990_35	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0142990_35	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0142990_35	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0142990_36	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0142990_36	UniRef90	UniRef90_A0A3E4V817	Terminase large subunit	NA
UHGV-0142990_36	eggNOG-mapper	1232453.BAIF02000028_gene2720	Phage Terminase	NA
UHGV-0142990_36	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0142990_36	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0142990_36	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0142990_36	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0142990_38	PHROG	phrog_12	portal protein	head and packaging
UHGV-0142990_38	UniRef90	UniRef90_A0A3E4V862	Phage portal protein	NA
UHGV-0142990_38	eggNOG-mapper	1232453.BAIF02000028_gene2721	Phage portal protein, HK97 family	NA
UHGV-0142990_38	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0142990_38	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0142990_38	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0142990_38	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0142990_39	KOfam	K06904	NA	NA
UHGV-0142990_39	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0142990_39	UniRef90	UniRef90_A0A3E4V855	HK97 family phage prohead protease	NA
UHGV-0142990_39	eggNOG-mapper	1232453.BAIF02000028_gene2722	Phage prohead protease, HK97 family	NA
UHGV-0142990_39	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0142990_39	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0142990_39	COG	COG3740	Phage head maturation protease	NA
UHGV-0142990_39	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0142990_40	PHROG	phrog_10	major head protein	head and packaging
UHGV-0142990_40	UniRef90	UniRef90_A0A415S777	Phage major capsid protein	NA
UHGV-0142990_40	eggNOG-mapper	1232453.BAIF02000028_gene2723	capsid protein	NA
UHGV-0142990_40	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0142990_40	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0142990_40	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0142990_40	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0142990_41	PHROG	phrog_366	tail fiber protein	tail
UHGV-0142990_41	UniRef90	UniRef90_UPI001D05A857	head fiber protein	NA
UHGV-0142990_41	eggNOG-mapper	1232443.BAIA02000078_gene28	domain, Protein	NA
UHGV-0142990_41	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0142990_41	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0142990_42	PHROG	phrog_2550	NA	unknown function
UHGV-0142990_42	UniRef90	UniRef90_A0A3E3JYI5	Phage gp6-like head-tail connector protein	NA
UHGV-0142990_42	eggNOG-mapper	1232453.BAIF02000028_gene2725	NA	NA
UHGV-0142990_42	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0142990_43	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0142990_43	UniRef90	UniRef90_UPI001D057432	phage head closure protein	NA
UHGV-0142990_43	eggNOG-mapper	1232453.BAIF02000028_gene2726	NA	NA
UHGV-0142990_43	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0142990_43	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0142990_44	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0142990_44	UniRef90	UniRef90_UPI000465037A	HK97 gp10 family phage protein	NA
UHGV-0142990_44	eggNOG-mapper	1158604.I591_01763	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0142990_44	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0142990_44	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0142990_45	PHROG	phrog_78	tail terminator	connector
UHGV-0142990_45	UniRef90	UniRef90_A0A0D6DV47	Prophage pi2 protein 38	NA
UHGV-0142990_45	eggNOG-mapper	272623.L59277	NA	NA
UHGV-0142990_45	Structural annotation	PF20765	NA	NA
UHGV-0142990_46	PHROG	phrog_88	major tail protein	tail
UHGV-0142990_46	UniRef90	UniRef90_A0A3E4V8A6	Phage tail protein	NA
UHGV-0142990_46	eggNOG-mapper	1232453.BAIF02000028_gene2729	phage major tail protein, phi13 family	NA
UHGV-0142990_46	Pfam	PF06488	Phage tail tube protein	L_lac_phage_MSP
UHGV-0142990_46	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0142990_46	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0142990_47	PHROG	phrog_709	NA	unknown function
UHGV-0142990_47	UniRef90	UniRef90_A0A0D6DV15	Prophage pi2 protein 40	NA
UHGV-0142990_47	eggNOG-mapper	1232453.BAIF02000028_gene2730	NA	NA
UHGV-0142990_47	Structural annotation	PF19591	NA	NA
UHGV-0142990_48	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0142990_48	UniRef90	UniRef90_A0A3E4V829	Phage tail tape measure protein	NA
UHGV-0142990_48	eggNOG-mapper	1232453.BAIF02000028_gene2732	Phage tail tape measure protein, TP901 family	NA
UHGV-0142990_48	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0142990_48	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0142990_48	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0142990_48	COG	COG3953	SLT domain protein	NA
UHGV-0142990_48	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0142990_49	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0142990_49	UniRef90	UniRef90_UPI001186A0C2	phage tail family protein	NA
UHGV-0142990_49	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-0142990_49	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0142990_49	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0142990_49	COG	COG4722	Phage-related protein YomH	NA
UHGV-0142990_49	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0142990_50	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0142990_50	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0142990_50	UniRef90	UniRef90_UPI000467D60B	collagen-like protein	NA
UHGV-0142990_50	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-0142990_50	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0142990_50	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-0142990_50	Structural annotation	PF14594, PF08931, PF19081, TIGR01665, COG4926	NA	NA
UHGV-0142990_51	PHROG	phrog_199	holin	lysis
UHGV-0142990_51	UniRef90	UniRef90_A0A2N5P5I5	Holin	NA
UHGV-0142990_51	eggNOG-mapper	1469948.JPNB01000001_gene536	TIGRFAM toxin secretion phage lysis holin	NA
UHGV-0142990_51	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0142990_51	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0142990_51	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0142990_51	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0142990_52	PHROG	phrog_9243	NA	unknown function
UHGV-0142990_52	UniRef90	UniRef90_UPI00156F94F8	NA	NA
UHGV-0142990_52	eggNOG-mapper	1410632.JHWW01000002_gene2047	NA	NA
UHGV-0142990_52	Pfam	PF12686	NA	DUF3800