UHGV-0143149

Genome information

Genome length 28,240 bps

CDS count 41

Completeness 64.02% (medium-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143149
vOTU ID	vOTU-023595
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_422086
BioSample	NA
Country	Estonia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.02% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.91
Jumbo phage	No

Genome content
Genome length	28,240 bps
GC content	53.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	92.96%
Average CDS length	642.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143149_1	UniRef90	UniRef90_UPI0018AC41F1	helix-turn-helix domain-containing protein	NA
UHGV-0143149_1	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0143149_1	Structural annotation	PF13542	NA	NA
UHGV-0143149_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0143149_2	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0143149_2	UniRef90	UniRef90_A0A1C6J947	Bacteriophage terminase large (ATPase) subunit and inactivated derivatives	NA
UHGV-0143149_2	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0143149_2	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0143149_2	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0143149_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-0143149_2	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0143149_3	PHROG	phrog_533	portal protein	head and packaging
UHGV-0143149_3	UniRef90	UniRef90_A0A136WBU7	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0143149_3	eggNOG-mapper	663278.Ethha_0090	NA	NA
UHGV-0143149_3	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0143149_4	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0143149_4	UniRef90	UniRef90_A0A1C6B625	Phage minor capsid protein 2	NA
UHGV-0143149_4	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-0143149_4	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0143149_4	COG	COG2369	NA	NA
UHGV-0143149_4	Structural annotation	PF06152	NA	NA
UHGV-0143149_5	PHROG	phrog_1233	NA	unknown function
UHGV-0143149_5	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0143149_5	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0143149_6	UniRef90	UniRef90_A0A1C6B5I1	Phage minor structural protein GP20	NA
UHGV-0143149_6	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0143149_6	Structural annotation	PF06810	NA	NA
UHGV-0143149_7	PHROG	phrog_544	major head protein	head and packaging
UHGV-0143149_7	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0143149_7	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0143149_7	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0143149_7	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0143149_8	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0143149_8	UniRef90	UniRef90_A0A345MKD1	Putative head-tail connector protein	NA
UHGV-0143149_9	PHROG	phrog_3366	NA	unknown function
UHGV-0143149_9	Pfam	PF20536	NA	DUF6751
UHGV-0143149_9	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0143149_10	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0143149_10	UniRef90	UniRef90_UPI001C3B04D8	Minor capsid protein	NA
UHGV-0143149_10	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-0143149_10	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0143149_10	Structural annotation	PF11114	NA	NA
UHGV-0143149_11	PHROG	phrog_3266	tail completion	connector
UHGV-0143149_11	Structural annotation	PF12691	NA	NA
UHGV-0143149_12	PHROG	phrog_820	major tail protein	tail
UHGV-0143149_12	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0143149_12	eggNOG-mapper	411461.DORFOR_01172	NA	NA
UHGV-0143149_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0143149_13	Structural annotation	PF20378	NA	NA
UHGV-0143149_14	PHROG	phrog_706	NA	unknown function
UHGV-0143149_14	UniRef90	UniRef90_A0A1C6B556	Bacteriophage Gp15 protein	NA
UHGV-0143149_14	eggNOG-mapper	1151292.QEW_4528	Bacteriophage Gp15 protein	NA
UHGV-0143149_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0143149_14	Structural annotation	PF06854	NA	NA
UHGV-0143149_15	PHROG	phrog_23464	NA	unknown function
UHGV-0143149_15	eggNOG-mapper	1378168.N510_03078	Tail tape measure protein, TP901 family	NA
UHGV-0143149_15	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0143149_15	Structural annotation	PF20155, TIGR02971, COG5280	NA	NA
UHGV-0143149_16	PHROG	phrog_1194	NA	unknown function
UHGV-0143149_16	eggNOG-mapper	1120998.AUFC01000030_gene2246	NA	NA
UHGV-0143149_16	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0143149_17	PHROG	phrog_32744	NA	unknown function
UHGV-0143149_17	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0143149_17	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0143149_19	PHROG	phrog_24451	NA	unknown function
UHGV-0143149_19	eggNOG-mapper	931276.Cspa_c10290	NA	NA
UHGV-0143149_20	UniRef90	UniRef90_UPI001C1090AB	collagen-like protein	NA
UHGV-0143149_20	eggNOG-mapper	1297617.JPJD01000099_gene2171	Collagen triple helix repeat protein	NA
UHGV-0143149_20	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0143149_20	Structural annotation	PF10651, COG5456	NA	NA
UHGV-0143149_22	PHROG	phrog_10898	NA	unknown function
UHGV-0143149_22	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-0143149_22	eggNOG-mapper	935837.JAEK01000059_gene4869	O-Glycosyl hydrolase family 30	NA
UHGV-0143149_22	COG	COG3401	Fibronectin type 3 domain	NA
UHGV-0143149_22	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-0143149_23	Structural annotation	PF16408, NF033510	NA	NA
UHGV-0143149_25	PHROG	phrog_27545	NA	unknown function
UHGV-0143149_25	eggNOG-mapper	742738.HMPREF9460_00363	NA	NA
UHGV-0143149_29	eggNOG-mapper	742738.HMPREF9460_03967	NA	NA
UHGV-0143149_30	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0143149_30	PHROG	phrog_18955	NA	unknown function
UHGV-0143149_30	UniRef90	UniRef90_A0A1C7FQI4	MurNAc-LAA domain-containing protein	NA
UHGV-0143149_30	eggNOG-mapper	1121344.JHZO01000003_gene744	Ami_3	NA
UHGV-0143149_30	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0143149_30	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0143149_30	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0143149_30	Structural annotation	PF01520, PF09992, MF_00417, TIGR02883, COG0860, COG4632	NA	NA
UHGV-0143149_31	PHROG	phrog_1129	holin	lysis
UHGV-0143149_31	UniRef90	UniRef90_A0A1C7FPV3	Enolase	NA
UHGV-0143149_31	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0143149_31	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0143149_31	Structural annotation	PF06946	NA	NA
UHGV-0143149_32	PHROG	phrog_4105	NA	unknown function
UHGV-0143149_32	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-0143149_33	UniRef90	UniRef90_U2R3E6	KORA domain-containing protein	NA
UHGV-0143149_33	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0143149_34	PHROG	phrog_1281	NA	unknown function
UHGV-0143149_34	UniRef90	UniRef90_A0A0W7TLZ5	NA	NA
UHGV-0143149_34	eggNOG-mapper	1235798.C817_03619	NA	NA
UHGV-0143149_34	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0143149_34	COG	COG3600	NA	NA
UHGV-0143149_34	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0143149_36	eggNOG-mapper	445972.ANACOL_01878	NA	NA
UHGV-0143149_38	PHROG	phrog_16490	NA	unknown function
UHGV-0143149_38	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0143149_39	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0143149_40	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0143149_41	UniRef90	UniRef90_UPI001647B0A0	polysaccharide deacetylase family protein	NA
UHGV-0143149_41	eggNOG-mapper	742738.HMPREF9460_00713	polysaccharide deacetylase	NA
UHGV-0143149_41	COG	COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	NA