UHGV-0143155

Genome information

Genome length 23,931 bps

CDS count 38

Completeness 100.00% (complete)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143155
vOTU ID	vOTU-004094
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_419000
BioSample	NA
Country	Estonia
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.72
Jumbo phage	No

Genome content
Genome length	23,931 bps
GC content	39.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	90.73%
Average CDS length	574.97 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143155_1	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0143155_1	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0143155_1	UniRef90	UniRef90_A0A374DDR5	Methyltransferase	NA
UHGV-0143155_1	eggNOG-mapper	877240.E1AC06_9CAUD	helicase activity	NA
UHGV-0143155_1	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0143155_1	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0143155_1	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0143155_2	KOfam	K07273	acm; lysozyme	NA
UHGV-0143155_2	PHROG	phrog_291	endolysin	lysis
UHGV-0143155_2	UniRef90	UniRef90_A0A373KPS8	PG_binding_1 domain-containing protein	NA
UHGV-0143155_2	eggNOG-mapper	1120933.ATUY01000002_gene158	lysozyme activity	NA
UHGV-0143155_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0143155_2	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0143155_2	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0143155_2	Structural annotation	PF01183, PF01471, COG3757	NA	NA
UHGV-0143155_3	PHROG	phrog_774	NA	unknown function
UHGV-0143155_3	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0143155_4	PHROG	phrog_443	holin	lysis
UHGV-0143155_4	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-0143155_4	eggNOG-mapper	1235797.C816_04172	Putative lactococcus lactis phage r1t holin	NA
UHGV-0143155_4	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0143155_4	Structural annotation	PF16945	NA	NA
UHGV-0143155_5	PHROG	phrog_1863	NA	unknown function
UHGV-0143155_5	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0143155_5	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0143155_7	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-0143155_7	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0143155_7	Structural annotation	PF10651, PF08931, TIGR02268	NA	NA
UHGV-0143155_8	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0143155_8	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0143155_8	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0143155_8	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0143155_8	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0143155_8	COG	COG4926	Phage-related protein	NA
UHGV-0143155_8	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0143155_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0143155_9	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0143155_9	eggNOG-mapper	1246.JMEA01000006_gene51	phage tail	NA
UHGV-0143155_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-0143155_9	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0143155_10	PHROG	phrog_23464	NA	unknown function
UHGV-0143155_10	UniRef90	UniRef90_A0A1C6JGQ9	Phage-related minor tail protein	NA
UHGV-0143155_10	eggNOG-mapper	1378168.N510_03078	Tail tape measure protein, TP901 family	NA
UHGV-0143155_10	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0143155_10	Structural annotation	COG3941	NA	NA
UHGV-0143155_12	PHROG	phrog_1021	NA	unknown function
UHGV-0143155_13	PHROG	phrog_885	major tail protein	tail
UHGV-0143155_13	UniRef90	UniRef90_Q894J4	Conserved protein	NA
UHGV-0143155_13	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-0143155_13	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0143155_14	Structural annotation	PF12691	NA	NA
UHGV-0143155_15	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-0143155_15	eggNOG-mapper	642492.Clole_0747	NA	NA
UHGV-0143155_15	Structural annotation	TIGR01725	NA	NA
UHGV-0143155_16	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0143155_16	UniRef90	UniRef90_A0A373XMG4	Phage head-tail adapter protein	NA
UHGV-0143155_16	eggNOG-mapper	1536769.P40081_01090	head-tail adaptor	NA
UHGV-0143155_16	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0143155_16	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0143155_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0143155_17	PHROG	phrog_5223	neck protein	connector
UHGV-0143155_17	UniRef90	UniRef90_A0A174XIL0	NA	NA
UHGV-0143155_17	eggNOG-mapper	411902.CLOBOL_03878	NA	NA
UHGV-0143155_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0143155_18	UniRef90	UniRef90_A0A373XLR3	Phage major capsid protein	NA
UHGV-0143155_18	eggNOG-mapper	411468.CLOSCI_00548	Phage capsid family	NA
UHGV-0143155_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0143155_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0143155_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0143155_19	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0143155_19	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0143155_19	UniRef90	UniRef90_A0A373XPG0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0143155_19	eggNOG-mapper	1396.DJ87_978	Clp protease	NA
UHGV-0143155_19	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0143155_19	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0143155_19	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0143155_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0143155_20	UniRef90	UniRef90_A0A373XNZ6	Phage portal protein	NA
UHGV-0143155_20	eggNOG-mapper	411468.CLOSCI_00550	Phage portal protein	NA
UHGV-0143155_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0143155_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0143155_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0143155_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0143155_21	UniRef90	UniRef90_A0A373XNY0	Terminase large subunit	NA
UHGV-0143155_21	eggNOG-mapper	411468.CLOSCI_00551	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0143155_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0143155_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0143155_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0143155_21	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0143155_22	PHROG	phrog_1066	NA	unknown function
UHGV-0143155_22	eggNOG-mapper	931276.Cspa_c10130	NA	NA
UHGV-0143155_23	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0143155_23	UniRef90	UniRef90_A0A373XNZ9	HNH endonuclease	NA
UHGV-0143155_23	eggNOG-mapper	500633.CLOHIR_00362	HNH endonuclease	NA
UHGV-0143155_23	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0143155_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0143155_24	eggNOG-mapper	394503.Ccel_3053	NA	NA
UHGV-0143155_24	Structural annotation	TIGR01636	NA	NA
UHGV-0143155_25	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0143155_25	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0143155_25	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0143155_28	PHROG	phrog_8684	NA	unknown function
UHGV-0143155_28	UniRef90	UniRef90_A0A374DV44	YopX domain-containing protein	NA
UHGV-0143155_28	eggNOG-mapper	411473.RUMCAL_00283	YopX protein	NA
UHGV-0143155_28	Pfam	PF09643	YopX protein	YopX
UHGV-0143155_28	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0143155_28	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0143155_29	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0143155_29	UniRef90	UniRef90_A0A374DVG7	HNH endonuclease	NA
UHGV-0143155_29	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0143155_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0143155_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0143155_29	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0143155_31	PHROG	phrog_824	NA	unknown function
UHGV-0143155_31	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0143155_31	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0143155_33	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0143155_33	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0143155_33	UniRef90	UniRef90_UPI000E47CAB6	ParB/RepB/Spo0J family partition protein	NA
UHGV-0143155_33	eggNOG-mapper	1160721.RBI_I01596	ParB-like nuclease domain	NA
UHGV-0143155_33	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0143155_33	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0143155_33	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0143155_33	Structural annotation	PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0143155_35	Structural annotation	COG1862	NA	NA
UHGV-0143155_36	UniRef90	UniRef90_A0A2N0ULT9	DNA binding domain, excisionase family	NA
UHGV-0143155_36	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0143155_36	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0143155_36	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0143155_38	UniRef90	UniRef90_UPI001494A832	helix-turn-helix domain-containing protein	NA
UHGV-0143155_38	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0143155_38	Structural annotation	PF05339, NF041951, COG1476	NA	NA