UHGV-0143157

Genome information

Genome length 32,501 bps

CDS count 63

Completeness 88.32% (medium-quality)

geNomad score 0.9323

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143157
vOTU ID	vOTU-023142
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_421617
BioSample	NA
Country	Russia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.32% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9323
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.75
Jumbo phage	No

Genome content
Genome length	32,501 bps
GC content	34.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	87.56%
Average CDS length	455.95 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143157_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0143157_1	UniRef90	UniRef90_A0A7U9CJR6	HTH cro/C1-type domain-containing protein	NA
UHGV-0143157_1	eggNOG-mapper	1235800.C819_02266	Helix-turn-helix XRE-family like proteins	NA
UHGV-0143157_1	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0143157_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0143157_1	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0143157_3	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0143157_3	UniRef90	UniRef90_UPI001D08DCF8	ORF6C domain-containing protein	NA
UHGV-0143157_3	eggNOG-mapper	1232446.BAIE02000011_gene1630	ORF6C domain	NA
UHGV-0143157_3	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0143157_3	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0143157_3	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0143157_3	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0143157_5	UniRef90	UniRef90_A0A3E3ACS2	DNA-binding protein	NA
UHGV-0143157_8	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0143157_8	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0143157_8	UniRef90	UniRef90_UPI000E4FA7A6	site-specific DNA-methyltransferase	NA
UHGV-0143157_8	eggNOG-mapper	1314.HKU360_01238	DNA modification methylase DNA replication, recombination, and repair	NA
UHGV-0143157_8	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0143157_8	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0143157_8	COG	COG0863	DNA modification methylase	NA
UHGV-0143157_8	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0143157_10	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0143157_10	UniRef90	UniRef90_G9R0Z0	HNHc domain-containing protein	NA
UHGV-0143157_10	eggNOG-mapper	360911.EAT1b_0007	NUMOD4 motif	NA
UHGV-0143157_10	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0143157_10	Structural annotation	PF13392, PF07453	NA	NA
UHGV-0143157_14	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0143157_14	PHROG	phrog_216	integrase	integration and excision
UHGV-0143157_14	UniRef90	UniRef90_A0A7U9CL76	Tyr recombinase domain-containing protein	NA
UHGV-0143157_14	eggNOG-mapper	1232446.BAIE02000002_gene805	Integrase	NA
UHGV-0143157_14	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0143157_14	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0143157_14	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0143157_20	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0143157_20	UniRef90	UniRef90_A0A3E3EG87	SAM-dependent methyltransferase	NA
UHGV-0143157_20	eggNOG-mapper	1232446.BAIE02000011_gene1614	methyltransferase	NA
UHGV-0143157_20	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0143157_20	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0143157_20	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0143157_20	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0143157_22	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0143157_22	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0143157_22	eggNOG-mapper	1232446.BAIE02000011_gene1613	NA	NA
UHGV-0143157_22	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0143157_23	PHROG	phrog_6969	NA	unknown function
UHGV-0143157_23	UniRef90	UniRef90_UPI000E4B3C45	helix-turn-helix domain-containing protein	NA
UHGV-0143157_23	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0143157_23	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0143157_24	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0143157_24	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0143157_24	UniRef90	UniRef90_UPI001C390552	ATP-binding protein	NA
UHGV-0143157_24	eggNOG-mapper	1232446.BAIE02000011_gene1611	NA	NA
UHGV-0143157_24	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0143157_24	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0143157_24	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0143157_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0143157_30	UniRef90	UniRef90_A0A350RA59	Terminase large subunit	NA
UHGV-0143157_30	eggNOG-mapper	1536774.H70357_10615	Terminase	NA
UHGV-0143157_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0143157_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0143157_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0143157_31	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0143157_31	UniRef90	UniRef90_A0A1Y4N9K6	HNHc domain-containing protein	NA
UHGV-0143157_31	eggNOG-mapper	457396.CSBG_01044	HNH endonuclease	NA
UHGV-0143157_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0143157_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0143157_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-0143157_32	UniRef90	UniRef90_A0A509LWD3	Phage portal protein	NA
UHGV-0143157_32	eggNOG-mapper	469617.FUAG_01837	Phage portal protein	NA
UHGV-0143157_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0143157_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0143157_32	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0143157_33	KOfam	K06904	NA	NA
UHGV-0143157_33	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0143157_33	UniRef90	UniRef90_A0A7U9CLG0	HK97 family phage prohead protease	NA
UHGV-0143157_33	eggNOG-mapper	1278311.AUAL01000001_gene29	Phage prohead protease, HK97 family	NA
UHGV-0143157_33	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0143157_33	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0143157_33	COG	COG3740	Phage head maturation protease	NA
UHGV-0143157_33	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0143157_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-0143157_34	UniRef90	UniRef90_A0A1Y4N8Q7	Phage major capsid protein	NA
UHGV-0143157_34	eggNOG-mapper	34007.IT40_26850	Phage capsid family	NA
UHGV-0143157_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0143157_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0143157_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0143157_34	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0143157_39	UniRef90	UniRef90_A0A0B5APK7	Prophage pi2 protein 37	NA
UHGV-0143157_39	eggNOG-mapper	1145276.T479_19950	NA	NA
UHGV-0143157_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0143157_40	PHROG	phrog_88	major tail protein	tail
UHGV-0143157_40	UniRef90	UniRef90_U2KWM8	Phage major tail protein, phi13 family	NA
UHGV-0143157_40	eggNOG-mapper	411473.RUMCAL_01152	phage major tail protein, phi13 family	NA
UHGV-0143157_40	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0143157_42	PHROG	phrog_23464	NA	unknown function
UHGV-0143157_42	UniRef90	UniRef90_A0A1I6EGT7	Phage-related minor tail protein	NA
UHGV-0143157_42	eggNOG-mapper	1462526.BN990_01862	Phage tail tape measure protein TP901	NA
UHGV-0143157_42	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0143157_42	Structural annotation	PF20155, TIGR01760, COG5280	NA	NA
UHGV-0143157_43	PHROG	phrog_13564	minor tail protein	tail
UHGV-0143157_43	eggNOG-mapper	411471.SUBVAR_05861	NA	NA
UHGV-0143157_43	Pfam	PF16774	Distal tail protein, N-terminal domain	Dit_N
UHGV-0143157_43	Structural annotation	PF16774, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0143157_44	PHROG	phrog_7064	tail protein	tail
UHGV-0143157_44	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0143157_45	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0143157_45	PHROG	phrog_3088	amidase	lysis
UHGV-0143157_45	UniRef90	UniRef90_A0A7U9GPE9	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0143157_45	eggNOG-mapper	1216932.CM240_0314	Ami_2	NA
UHGV-0143157_45	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0143157_45	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0143157_46	PHROG	phrog_6779	tail protein	tail
UHGV-0143157_46	eggNOG-mapper	1158601.I585_04168	NA	NA
UHGV-0143157_47	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0143157_47	PHROG	phrog_11157	NA	unknown function
UHGV-0143157_47	UniRef90	UniRef90_A0A1Y4N8R1	Big_13 domain-containing protein	NA
UHGV-0143157_47	eggNOG-mapper	1232446.BAIE02000002_gene839	NA	NA
UHGV-0143157_47	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0143157_47	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0143157_47	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0143157_47	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0143157_48	PHROG	phrog_32322	NA	unknown function
UHGV-0143157_48	UniRef90	UniRef90_A0A7U9CLF4	Ig-like_bact domain-containing protein	NA
UHGV-0143157_48	eggNOG-mapper	1232446.BAIE02000002_gene840	NA	NA
UHGV-0143157_48	Pfam	PF13754	NA	Big_3_4
UHGV-0143157_48	Structural annotation	PF13754	NA	NA
UHGV-0143157_49	Structural annotation	PF07703, TIGR02657, COG2372	NA	NA
UHGV-0143157_52	PHROG	phrog_24267	NA	unknown function
UHGV-0143157_52	UniRef90	UniRef90_A0A173T301	Phage-related holin (Lysis protein)	NA
UHGV-0143157_52	eggNOG-mapper	658655.HMPREF0988_00525	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0143157_52	COG	COG4675	Phage tail collar domain	NA
UHGV-0143157_52	Structural annotation	COG4675	NA	NA
UHGV-0143157_55	PHROG	phrog_1129	holin	lysis
UHGV-0143157_55	UniRef90	UniRef90_A0A0J8Z1S7	Holin protein	NA
UHGV-0143157_55	eggNOG-mapper	1123075.AUDP01000020_gene1532	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0143157_55	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0143157_55	Structural annotation	PF06946	NA	NA
UHGV-0143157_56	PHROG	phrog_4105	NA	unknown function
UHGV-0143157_56	eggNOG-mapper	1121105.ATXL01000027_gene760	NA	NA
UHGV-0143157_57	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0143157_57	PHROG	phrog_435	endolysin	lysis
UHGV-0143157_57	UniRef90	UniRef90_UPI001D075068	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0143157_57	eggNOG-mapper	411461.DORFOR_01187	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0143157_57	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0143157_57	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0143157_57	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0143157_57	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-0143157_60	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0143157_60	UniRef90	UniRef90_A0A6B4QZ31	AP2 domain-containing protein	NA
UHGV-0143157_60	eggNOG-mapper	478749.BRYFOR_06584	AP2 domain protein	NA
UHGV-0143157_60	Pfam	PF21817	CapR homology domain	CapR
UHGV-0143157_60	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0143157_62	eggNOG-mapper	1232446.BAIE02000010_gene1963	NA	NA
UHGV-0143157_62	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0143157_62	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA