UHGV-0143172

Genome information

Genome length 31,213 bps

CDS count 47

Completeness 91.42% (high-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143172
vOTU ID	vOTU-067805
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_406707
BioSample	NA
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.42% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.67
Jumbo phage	No

Genome content
Genome length	31,213 bps
GC content	60.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	94.33%
Average CDS length	631.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143172_1	KOfam	K14059	int; integrase	NA
UHGV-0143172_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0143172_1	UniRef90	UniRef90_UPI001EDEB0AD	site-specific integrase	NA
UHGV-0143172_1	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0143172_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0143172_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0143172_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0143172_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0143172_2	eggNOG-mapper	1262449.CP6013_2082	NA	NA
UHGV-0143172_2	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0143172_4	UniRef90	UniRef90_A0A1Y4C9D7	HTH cro/C1-type domain-containing protein	NA
UHGV-0143172_4	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0143172_4	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0143172_5	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0143172_5	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0143172_5	UniRef90	UniRef90_A0A1Y4S764	BRCT domain-containing protein	NA
UHGV-0143172_5	eggNOG-mapper	1410674.JNKU01000049_gene1948	EXOIII	NA
UHGV-0143172_5	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0143172_5	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0143172_5	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0143172_5	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0143172_5	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0143172_5	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0143172_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0143172_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0143172_7	UniRef90	UniRef90_UPI000F0D19B9	helix-turn-helix domain-containing protein	NA
UHGV-0143172_7	eggNOG-mapper	1408415.JHXL01000001_gene419	sequence-specific DNA binding	NA
UHGV-0143172_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143172_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0143172_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0143172_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0143172_8	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0143172_8	UniRef90	UniRef90_G9YL68	DNA-binding helix-turn-helix protein	NA
UHGV-0143172_8	eggNOG-mapper	742738.HMPREF9460_00847	Helix-turn-helix XRE-family like proteins	NA
UHGV-0143172_8	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0143172_8	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0143172_8	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0143172_11	Structural annotation	PF21327	NA	NA
UHGV-0143172_12	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0143172_12	UniRef90	UniRef90_UPI001F170B82	helix-turn-helix domain-containing protein	NA
UHGV-0143172_12	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0143172_12	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0143172_12	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0143172_12	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0143172_13	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0143172_13	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0143172_13	UniRef90	UniRef90_A0A1Y3RP11	DNA helicase	NA
UHGV-0143172_13	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0143172_13	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0143172_13	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0143172_13	COG	COG0305	Replicative DNA helicase	NA
UHGV-0143172_13	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0143172_15	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0143172_15	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0143172_15	UniRef90	UniRef90_UPI000318E277	ParA family protein	NA
UHGV-0143172_15	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0143172_15	Pfam	PF13614	AAA domain	AAA_31
UHGV-0143172_15	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0143172_15	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0143172_16	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0143172_16	PHROG	phrog_27290	NA	unknown function
UHGV-0143172_16	UniRef90	UniRef90_UPI001C029D7C	ParB N-terminal domain-containing protein	NA
UHGV-0143172_16	eggNOG-mapper	742738.HMPREF9460_00856	ParB-like nuclease domain	NA
UHGV-0143172_16	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0143172_16	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0143172_16	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0143172_21	PHROG	phrog_3136	NA	unknown function
UHGV-0143172_21	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0143172_21	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0143172_21	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0143172_21	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0143172_22	PHROG	phrog_38832	NA	unknown function
UHGV-0143172_22	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0143172_22	Structural annotation	PF10781	NA	NA
UHGV-0143172_27	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0143172_27	eggNOG-mapper	742738.HMPREF9460_04063	NA	NA
UHGV-0143172_27	Structural annotation	PF01446	NA	NA
UHGV-0143172_28	UniRef90	UniRef90_UPI001D014F8E	cysteine-rich KTR domain-containing protein	NA
UHGV-0143172_28	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0143172_28	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0143172_28	Structural annotation	PF14205	NA	NA
UHGV-0143172_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0143172_29	UniRef90	UniRef90_G9YSB5	HNH domain-containing protein	NA
UHGV-0143172_29	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-0143172_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0143172_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0143172_30	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0143172_30	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0143172_30	UniRef90	UniRef90_A0A810PZK9	ParB domain-containing protein	NA
UHGV-0143172_30	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0143172_30	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0143172_30	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0143172_30	COG	COG0863	DNA modification methylase	NA
UHGV-0143172_30	Structural annotation	PF02195, PF10354, TIGR00180, NF010253, COG5119	NA	NA
UHGV-0143172_31	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0143172_31	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0143172_31	UniRef90	UniRef90_A0A810Q3Z7	N6_N4_Mtase domain-containing protein	NA
UHGV-0143172_31	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0143172_31	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0143172_31	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0143172_31	COG	COG0863	DNA modification methylase	NA
UHGV-0143172_31	Structural annotation	PF01555	NA	NA
UHGV-0143172_32	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0143172_32	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA
UHGV-0143172_32	eggNOG-mapper	1265845.PWEIH_00610	Phage terminase, small subunit	NA
UHGV-0143172_32	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0143172_32	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0143172_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0143172_33	UniRef90	UniRef90_UPI0018737C02	terminase large subunit	NA
UHGV-0143172_33	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0143172_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0143172_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0143172_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0143172_33	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0143172_34	PHROG	phrog_12	portal protein	head and packaging
UHGV-0143172_34	UniRef90	UniRef90_UPI0018755FA4	phage portal protein	NA
UHGV-0143172_34	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-0143172_34	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0143172_34	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0143172_34	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0143172_34	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0143172_35	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0143172_35	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0143172_35	UniRef90	UniRef90_A0A1Y4BT12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0143172_35	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0143172_35	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0143172_35	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0143172_35	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0143172_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-0143172_36	UniRef90	UniRef90_G9YSC0	Cadherin-like domain-containing protein	NA
UHGV-0143172_36	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0143172_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0143172_36	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0143172_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0143172_36	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0143172_36	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0143172_37	PHROG	phrog_749	NA	unknown function
UHGV-0143172_37	UniRef90	UniRef90_UPI001C0FB8A8	head-tail connector protein	NA
UHGV-0143172_37	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0143172_38	PHROG	phrog_19734	NA	unknown function
UHGV-0143172_38	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0143172_38	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0143172_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0143172_39	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0143172_39	Structural annotation	PF05657	NA	NA
UHGV-0143172_40	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0143172_40	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0143172_40	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0143172_40	Structural annotation	TIGR01725	NA	NA
UHGV-0143172_41	PHROG	phrog_88	major tail protein	tail
UHGV-0143172_41	UniRef90	UniRef90_A0A1C6CIL7	Phage major tail protein, phi13 family	NA
UHGV-0143172_41	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0143172_41	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0143172_41	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0143172_44	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0143172_44	UniRef90	UniRef90_A0A373CK98	PblA (Fragment)	NA
UHGV-0143172_44	eggNOG-mapper	1216932.CM240_0625	tape measure	NA
UHGV-0143172_44	COG	COG5283	Phage-related tail protein	NA
UHGV-0143172_44	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0143172_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0143172_45	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0143172_45	eggNOG-mapper	536233.CLO_0897	tail component	NA
UHGV-0143172_45	COG	COG4722	Phage-related protein YomH	NA
UHGV-0143172_45	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0143172_46	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0143172_46	UniRef90	UniRef90_A0A316NPB5	Peptidase S74 domain-containing protein	NA
UHGV-0143172_46	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0143172_46	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0143172_46	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0143172_46	COG	COG4926	Phage-related protein	NA
UHGV-0143172_46	Structural annotation	PF14594, PF13884, TIGR01665, COG4926	NA	NA
UHGV-0143172_47	Structural annotation	PF10651, PF04862, TIGR04362, COG5513	NA	NA