UHGV-0143226

Genome information

Genome length 39,926 bps

CDS count 58

Completeness 99.90% (high-quality)

geNomad score 0.9672

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143226
vOTU ID	vOTU-011339
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_426947
BioSample	SAMN05826746
Country	Finland
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9672
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	72.57
Jumbo phage	No

Genome content
Genome length	39,926 bps
GC content	48.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	89.04%
Average CDS length	616.66 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143226_3	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0143226_3	PHROG	phrog_7	endolysin	lysis
UHGV-0143226_3	UniRef90	UniRef90_A0A8J7EPI0	Lysozyme	NA
UHGV-0143226_3	eggNOG-mapper	1005999.GLGR_2130	lysozyme	NA
UHGV-0143226_3	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0143226_3	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0143226_3	HAMAP	MF_04110	Endolysin	NA
UHGV-0143226_3	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0143226_4	PHROG	phrog_785	holin	lysis
UHGV-0143226_4	UniRef90	UniRef90_UPI001C254033	phage holin family protein	NA
UHGV-0143226_4	eggNOG-mapper	1203554.HMPREF1476_00269	LydA holin phage, holin superfamily III	NA
UHGV-0143226_4	Pfam	PF16083	LydA holin phage, holin superfamily III	Phage_holin_3_3
UHGV-0143226_6	eggNOG-mapper	742823.HMPREF9465_01858	Phage tail assembly chaperone protein	NA
UHGV-0143226_7	PHROG	phrog_11303	tail fiber protein	tail
UHGV-0143226_7	UniRef90	UniRef90_UPI0013F5B3AA	phage tail protein	NA
UHGV-0143226_7	eggNOG-mapper	1980924.B2ZY49_9CAUD	virus tail, fiber	NA
UHGV-0143226_7	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0143226_7	Structural annotation	PF07484, COG4675	NA	NA
UHGV-0143226_8	PHROG	phrog_587	structural protein	head and packaging
UHGV-0143226_8	UniRef90	UniRef90_UPI001C3ED497	NA	NA
UHGV-0143226_8	eggNOG-mapper	556269.ACDQ01000009_gene2026	NA	NA
UHGV-0143226_8	Pfam	PF11041	NA	DUF2612
UHGV-0143226_8	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-0143226_9	PHROG	phrog_6	baseplate protein	tail
UHGV-0143226_9	UniRef90	UniRef90_UPI0012BD7FBB	baseplate J/gp47 family protein	NA
UHGV-0143226_9	eggNOG-mapper	78245.Xaut_3651	homolog of phage Mu protein gp47	NA
UHGV-0143226_9	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0143226_9	COG	COG3299	NA	NA
UHGV-0143226_9	Structural annotation	PF04865, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0143226_10	PHROG	phrog_120	baseplate protein	tail
UHGV-0143226_10	UniRef90	UniRef90_A0A0M0TB02	Bacteriophage protein	NA
UHGV-0143226_10	eggNOG-mapper	1437882.AZRU01000124_gene4924	NA	NA
UHGV-0143226_10	Structural annotation	TIGR03357, COG3628	NA	NA
UHGV-0143226_11	UniRef90	UniRef90_UPI001F4F5C94	phage baseplate assembly protein V	NA
UHGV-0143226_11	eggNOG-mapper	1437882.AZRU01000124_gene4925	Baseplate assembly protein	NA
UHGV-0143226_11	Pfam	PF18352	NA	Gp138_N
UHGV-0143226_11	Pfam	PF18946	GpV Apex motif	Apex
UHGV-0143226_11	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0143226_11	Structural annotation	PF18352, TIGR01644, COG4384	NA	NA
UHGV-0143226_12	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-0143226_12	eggNOG-mapper	342113.DM82_1180	NA	NA
UHGV-0143226_12	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0143226_13	PHROG	phrog_349	virion structural protein	head and packaging
UHGV-0143226_13	eggNOG-mapper	556269.ACDQ01000009_gene2031	NA	NA
UHGV-0143226_14	PHROG	phrog_817	tail fiber protein	tail
UHGV-0143226_14	eggNOG-mapper	1144672.F966_02628	NA	NA
UHGV-0143226_14	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0143226_14	Structural annotation	PF21821, TIGR01633, COG3499	NA	NA
UHGV-0143226_15	PHROG	phrog_873	endolysin	head and packaging
UHGV-0143226_15	UniRef90	UniRef90_A0A7Y0FG95	Phage tail tape measure protein	NA
UHGV-0143226_15	eggNOG-mapper	598467.BrE312_2395	lytic transglycosylase activity	NA
UHGV-0143226_15	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0143226_15	Structural annotation	TIGR01760	NA	NA
UHGV-0143226_16	PHROG	phrog_1688	tail assembly chaperone	tail
UHGV-0143226_16	eggNOG-mapper	1217656.F964_02715	NA	NA
UHGV-0143226_16	Pfam	PF21822	Phage tail assembly chaperone protein, TAC	Phage_TAC_15
UHGV-0143226_16	Structural annotation	PF21822	NA	NA
UHGV-0143226_17	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-0143226_17	UniRef90	UniRef90_UPI0012BBC46E	NA	NA
UHGV-0143226_17	eggNOG-mapper	291112.PAU_01568	NA	NA
UHGV-0143226_17	Pfam	PF11681	Bacteriophage KPP10, Structural protein ORF10	KPP10_Orf10
UHGV-0143226_17	Structural annotation	PF11681, TIGR02126, COG5437	NA	NA
UHGV-0143226_18	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0143226_18	UniRef90	UniRef90_UPI001C3EBB30	NA	NA
UHGV-0143226_18	eggNOG-mapper	556269.ACDQ01000009_gene2037	NA	NA
UHGV-0143226_18	Pfam	PF11863	NA	DUF3383
UHGV-0143226_18	Structural annotation	PF11863, COG4386	NA	NA
UHGV-0143226_19	PHROG	phrog_1973	NA	unknown function
UHGV-0143226_19	UniRef90	UniRef90_C7BRT8	Putative bacteriophage protein	NA
UHGV-0143226_19	eggNOG-mapper	291112.PAU_01566	NA	NA
UHGV-0143226_19	Structural annotation	PF09646	NA	NA
UHGV-0143226_20	eggNOG-mapper	1163408.UU9_12313	NA	NA
UHGV-0143226_20	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0143226_21	PHROG	phrog_222	tail protein	tail
UHGV-0143226_21	eggNOG-mapper	633.DJ40_3638	NA	NA
UHGV-0143226_22	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-0143226_22	UniRef90	UniRef90_UPI001C3EACDB	NA	NA
UHGV-0143226_22	eggNOG-mapper	343509.SG1664	NA	NA
UHGV-0143226_22	Pfam	PF13262	NA	DUF4054
UHGV-0143226_22	Structural annotation	PF13262	NA	NA
UHGV-0143226_24	PHROG	phrog_264	major head protein	head and packaging
UHGV-0143226_24	UniRef90	UniRef90_UPI0012BB52DE	NA	NA
UHGV-0143226_24	eggNOG-mapper	1217656.F964_02707	NA	NA
UHGV-0143226_24	Pfam	PF09950	NA	DUF2184
UHGV-0143226_24	COG	COG4834	NA	NA
UHGV-0143226_24	Structural annotation	PF09950, MF_04113, TIGR01554, COG4834	NA	NA
UHGV-0143226_25	PHROG	phrog_563	virion structural protein	head and packaging
UHGV-0143226_25	UniRef90	UniRef90_I4VMU6	Bacteriophage protein	NA
UHGV-0143226_25	eggNOG-mapper	1163408.UU9_12338	NA	NA
UHGV-0143226_25	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0143226_26	KOfam	K09960	NA	NA
UHGV-0143226_26	PHROG	phrog_1961	NA	unknown function
UHGV-0143226_26	UniRef90	UniRef90_UPI001C3EA7CB	NA	NA
UHGV-0143226_26	eggNOG-mapper	1217656.F964_02705	NA	NA
UHGV-0143226_26	Pfam	PF09979	NA	DUF2213
UHGV-0143226_26	COG	COG3566	NA	NA
UHGV-0143226_26	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0143226_27	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-0143226_27	UniRef90	UniRef90_UPI001C3EE826	minor capsid protein	NA
UHGV-0143226_27	eggNOG-mapper	1437882.AZRU01000132_gene6660	Phage Mu protein F like protein	NA
UHGV-0143226_27	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0143226_27	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0143226_27	COG	COG2369	NA	NA
UHGV-0143226_27	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0143226_28	KOfam	K09961	NA	NA
UHGV-0143226_28	PHROG	phrog_146	portal protein	head and packaging
UHGV-0143226_28	UniRef90	UniRef90_A0A139K4Q4	Phage-associated protein, HI1409 family	NA
UHGV-0143226_28	eggNOG-mapper	78245.Xaut_3629	TIGRFAM phage-associated protein, HI1409 family	NA
UHGV-0143226_28	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0143226_28	NCBIFam	TIGR01555.1	phage-associated protein, HI1409 family	NA
UHGV-0143226_28	COG	COG3567	NA	NA
UHGV-0143226_28	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0143226_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0143226_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0143226_29	UniRef90	UniRef90_A0A139K4Q1	Phage terminase, large subunit, PBSX family	NA
UHGV-0143226_29	eggNOG-mapper	556268.OFAG_00321	Terminase RNAseH like domain	NA
UHGV-0143226_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0143226_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0143226_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0143226_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0143226_29	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0143226_30	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0143226_30	UniRef90	UniRef90_A0A8D4R1B7	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-0143226_30	eggNOG-mapper	1411685.U062_00007	NA	NA
UHGV-0143226_30	Structural annotation	PF13022	NA	NA
UHGV-0143226_31	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0143226_31	PHROG	phrog_12517	NA	unknown function
UHGV-0143226_31	UniRef90	UniRef90_UPI00195BA2D4	ParB N-terminal domain-containing protein	NA
UHGV-0143226_31	eggNOG-mapper	794903.OPIT5_03875	N-4 methylation of cytosine	NA
UHGV-0143226_31	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0143226_31	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0143226_31	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0143226_31	COG	COG0863	DNA modification methylase	NA
UHGV-0143226_31	Structural annotation	PF02195, PF01170, MF_02015, MF_01872, TIGR01177, TIGR04285, COG1041, COG5119	NA	NA
UHGV-0143226_34	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0143226_34	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0143226_34	UniRef90	UniRef90_UPI0011CC4457	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0143226_34	eggNOG-mapper	742823.HMPREF9465_00230	Holliday junction resolvase	NA
UHGV-0143226_34	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0143226_34	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0143226_34	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0143226_38	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0143226_38	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0143226_38	UniRef90	UniRef90_UPI0013F647C6	ATP-binding protein	NA
UHGV-0143226_38	eggNOG-mapper	742823.HMPREF9465_00892	DNA-dependent DNA replication	NA
UHGV-0143226_38	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0143226_38	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0143226_38	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0143226_39	PHROG	phrog_21472	NA	unknown function
UHGV-0143226_39	UniRef90	UniRef90_UPI00140935D7	YdaU family protein	NA
UHGV-0143226_39	eggNOG-mapper	1291050.JAGE01000002_gene3381	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0143226_39	Pfam	PF07120	NA	DUF1376
UHGV-0143226_39	Structural annotation	PF07120, COG3756	NA	NA
UHGV-0143226_40	PHROG	phrog_8008	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0143226_40	UniRef90	UniRef90_A0A0M2DVH2	Putative outer membrane efflux protein	NA
UHGV-0143226_41	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0143226_41	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0143226_41	UniRef90	UniRef90_UPI0013F65340	LexA family transcriptional regulator	NA
UHGV-0143226_41	eggNOG-mapper	469610.HMPREF0189_01093	Peptidase S24-like	NA
UHGV-0143226_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143226_41	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0143226_41	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0143226_41	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0143226_45	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0143226_45	UniRef90	UniRef90_A0A139K4R0	BRO family protein	NA
UHGV-0143226_45	eggNOG-mapper	1203554.HMPREF1476_00228	BRO family, N-terminal domain	NA
UHGV-0143226_45	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0143226_45	COG	COG3617	Prophage antirepressor	NA
UHGV-0143226_45	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0143226_46	PHROG	phrog_9226	NA	unknown function
UHGV-0143226_46	eggNOG-mapper	1112217.PPL19_05310	NA	NA
UHGV-0143226_48	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0143226_48	UniRef90	UniRef90_UPI001E37CA25	recombinase RecT	NA
UHGV-0143226_48	eggNOG-mapper	1217710.F969_02564	NA	NA
UHGV-0143226_48	Pfam	PF03837	RecT family	RecT
UHGV-0143226_48	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0143226_49	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0143226_49	UniRef90	UniRef90_A0A3B9Q777	PDDEXK_1 domain-containing protein	NA
UHGV-0143226_49	eggNOG-mapper	1218075.BAYA01000003_gene606	NA	NA
UHGV-0143226_49	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0143226_49	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0143226_50	PHROG	phrog_10477	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0143226_50	eggNOG-mapper	1218075.BAYA01000003_gene605	NA	NA
UHGV-0143226_51	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0143226_52	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0143226_52	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0143226_52	UniRef90	UniRef90_A0A3M2C3Z0	Single-stranded DNA-binding protein	NA
UHGV-0143226_52	eggNOG-mapper	1045854.WKK_02515	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0143226_52	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0143226_52	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0143226_52	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0143226_52	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0143226_56	KOfam	K14059	int; integrase	NA
UHGV-0143226_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0143226_56	UniRef90	UniRef90_A0A139K4Z7	Site-specific recombinase, phage integrase family	NA
UHGV-0143226_56	eggNOG-mapper	469610.HMPREF0189_01846	Belongs to the 'phage' integrase family	NA
UHGV-0143226_56	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0143226_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0143226_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0143226_56	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG4974	NA	NA
UHGV-0143226_57	eggNOG-mapper	742823.HMPREF9465_00180	NA	NA
UHGV-0143226_58	KOfam	K00560	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	NA
UHGV-0143226_58	PHROG	phrog_160	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0143226_58	UniRef90	UniRef90_K1K007	Thymidylate synthase	NA
UHGV-0143226_58	eggNOG-mapper	742823.HMPREF9465_00178	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis	NA
UHGV-0143226_58	Pfam	PF00303	Thymidylate synthase	Thymidylat_synt
UHGV-0143226_58	NCBIFam	NF002497.0	thymidylate synthase	NA
UHGV-0143226_58	COG	COG0207	Thymidylate synthase	NA
UHGV-0143226_58	HAMAP	MF_00008	Thymidylate synthase [thyA]	NA
UHGV-0143226_58	Structural annotation	PF00303, MF_00008, NF002497, COG0207	NA	NA