UHGV-0143251

Genome information

Genome length 35,232 bps

CDS count 47

Completeness 96.16% (high-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143251
vOTU ID	vOTU-014466
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_440720
BioSample	SAMN05971497
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.16% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	81.11
Jumbo phage	No

Genome content
Genome length	35,232 bps
GC content	38.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.48%
Average CDS length	695.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143251_1	KOfam	K14059	int; integrase	NA
UHGV-0143251_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0143251_1	UniRef90	UniRef90_UPI001EE781EB	site-specific integrase	NA
UHGV-0143251_1	eggNOG-mapper	1504823.CCMM01000008_gene1083	DNA integration	NA
UHGV-0143251_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0143251_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0143251_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0143251_1	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0143251_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0143251_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0143251_2	UniRef90	UniRef90_A0A6N9L4Y4	Helix-turn-helix domain-containing protein	NA
UHGV-0143251_2	eggNOG-mapper	411473.RUMCAL_03095	NA	NA
UHGV-0143251_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143251_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0143251_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0143251_2	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974	NA	NA
UHGV-0143251_3	UniRef90	UniRef90_UPI001CF844D1	NA	NA
UHGV-0143251_3	eggNOG-mapper	257314.LJ_1456	NA	NA
UHGV-0143251_3	Pfam	PF05339	NA	DUF739
UHGV-0143251_3	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0143251_3	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0143251_4	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0143251_4	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0143251_4	UniRef90	UniRef90_A0A6N9L4S6	Bro-N domain-containing protein	NA
UHGV-0143251_4	eggNOG-mapper	1423758.BN55_09165	BRO family, N-terminal domain	NA
UHGV-0143251_4	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0143251_4	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0143251_4	COG	COG3617	Prophage antirepressor	NA
UHGV-0143251_4	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0143251_5	UniRef90	UniRef90_A0A415XFB8	DNA-binding protein	NA
UHGV-0143251_5	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0143251_8	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0143251_8	PHROG	phrog_1499	NA	unknown function
UHGV-0143251_8	UniRef90	UniRef90_E2NR75	RecF/RecN/SMC N-terminal domain protein	NA
UHGV-0143251_8	eggNOG-mapper	1214217.ALNF01000014_gene1402	AAA domain	NA
UHGV-0143251_8	Pfam	PF13476	AAA domain	AAA_23
UHGV-0143251_8	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0143251_8	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0143251_9	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0143251_9	UniRef90	UniRef90_UPI001E57C8F5	ATP-binding protein	NA
UHGV-0143251_9	eggNOG-mapper	411462.DORLON_00811	AAA domain	NA
UHGV-0143251_9	Pfam	PF13479	AAA domain	AAA_24
UHGV-0143251_9	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0143251_10	PHROG	phrog_2698	NA	unknown function
UHGV-0143251_10	UniRef90	UniRef90_A0A359EX11	NA	NA
UHGV-0143251_10	eggNOG-mapper	552396.HMPREF0863_02437	NA	NA
UHGV-0143251_10	Pfam	PF05037	NA	DUF669
UHGV-0143251_10	Structural annotation	PF05037	NA	NA
UHGV-0143251_11	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0143251_11	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0143251_11	UniRef90	UniRef90_E2NR78	Helicase C-terminal domain protein	NA
UHGV-0143251_11	eggNOG-mapper	1232449.BAHV02000008_gene620	helicase superfamily c-terminal domain	NA
UHGV-0143251_11	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0143251_11	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0143251_11	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0143251_11	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0143251_11	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0143251_12	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0143251_12	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0143251_12	UniRef90	UniRef90_E2NR79	Primase C terminal 2 (PriCT-2)	NA
UHGV-0143251_12	eggNOG-mapper	610130.Closa_1370	Primase C terminal 2 (PriCT-2)	NA
UHGV-0143251_12	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0143251_12	Pfam	PF13481	AAA domain	AAA_25
UHGV-0143251_12	COG	COG3598	RecA-family ATPase	NA
UHGV-0143251_12	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0143251_13	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0143251_13	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0143251_13	UniRef90	UniRef90_E2NR80	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0143251_13	eggNOG-mapper	1232449.BAHV02000018_gene1542	Endodeoxyribonuclease RusA	NA
UHGV-0143251_13	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0143251_13	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0143251_13	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0143251_15	Structural annotation	PF10656	NA	NA
UHGV-0143251_16	PHROG	phrog_4856	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0143251_16	UniRef90	UniRef90_E2NR83	MazG domain-containing protein	NA
UHGV-0143251_16	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0143251_16	Structural annotation	MF_01019, NF002747, COG0140	NA	NA
UHGV-0143251_19	PHROG	phrog_4019	NA	unknown function
UHGV-0143251_19	UniRef90	UniRef90_F9PY75	Conserved domain protein	NA
UHGV-0143251_20	PHROG	phrog_22292	NA	unknown function
UHGV-0143251_20	eggNOG-mapper	1232446.BAIE02000041_gene2433	NA	NA
UHGV-0143251_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0143251_23	Pfam	PF07374	NA	DUF1492
UHGV-0143251_23	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0143251_23	Structural annotation	PF08281, MF_00674, NF007227, COG1191	NA	NA
UHGV-0143251_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0143251_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0143251_24	UniRef90	UniRef90_E2NR91	Terminase small subunit	NA
UHGV-0143251_24	eggNOG-mapper	1504823.CCMM01000008_gene1049	DNA packaging	NA
UHGV-0143251_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0143251_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0143251_24	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0143251_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0143251_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0143251_25	UniRef90	UniRef90_A0A6N9L4W9	PBSX family phage terminase large subunit	NA
UHGV-0143251_25	eggNOG-mapper	1504823.CCMM01000008_gene1048	DNA packaging	NA
UHGV-0143251_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0143251_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0143251_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0143251_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0143251_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0143251_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-0143251_26	UniRef90	UniRef90_A0A6N9L3D6	Phage portal protein	NA
UHGV-0143251_26	eggNOG-mapper	445974.CLORAM_02935	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0143251_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0143251_26	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0143251_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0143251_27	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0143251_27	UniRef90	UniRef90_UPI001C387790	minor capsid protein	NA
UHGV-0143251_27	eggNOG-mapper	1504823.CCMM01000008_gene1046	cell adhesion	NA
UHGV-0143251_27	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0143251_27	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0143251_27	COG	COG2369	NA	NA
UHGV-0143251_27	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0143251_28	PHROG	phrog_35328	NA	unknown function
UHGV-0143251_29	PHROG	phrog_3675	NA	unknown function
UHGV-0143251_29	UniRef90	UniRef90_A0A0E4H649	YjcQ protein	NA
UHGV-0143251_29	eggNOG-mapper	1120978.KB894082_gene1061	YjcQ protein	NA
UHGV-0143251_29	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0143251_29	Structural annotation	PF09639, TIGR04176, COG1695	NA	NA
UHGV-0143251_30	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0143251_30	UniRef90	UniRef90_A0A6N9L4V5	NA	NA
UHGV-0143251_30	eggNOG-mapper	1211844.CBLM010000016_gene1492	NA	NA
UHGV-0143251_30	Pfam	PF14265	NA	DUF4355
UHGV-0143251_30	Structural annotation	PF14265	NA	NA
UHGV-0143251_31	PHROG	phrog_422	major head protein	head and packaging
UHGV-0143251_31	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-0143251_31	eggNOG-mapper	1211844.CBLM010000016_gene1491	NA	NA
UHGV-0143251_31	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0143251_32	PHROG	phrog_2724	NA	unknown function
UHGV-0143251_32	UniRef90	UniRef90_A0A6N9L4P9	Rho_N domain-containing protein	NA
UHGV-0143251_32	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0143251_32	COG	COG0261	Ribosomal protein L21	NA
UHGV-0143251_32	Structural annotation	PF07498	NA	NA
UHGV-0143251_33	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0143251_33	UniRef90	UniRef90_UPI001C101B39	phage head-tail connector protein	NA
UHGV-0143251_33	eggNOG-mapper	1235800.C819_00483	Phage gp6-like head-tail connector protein	NA
UHGV-0143251_33	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0143251_33	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0143251_34	PHROG	phrog_2168	NA	unknown function
UHGV-0143251_34	eggNOG-mapper	1280689.AUJC01000003_gene969	NA	NA
UHGV-0143251_34	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0143251_35	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0143251_35	UniRef90	UniRef90_A0A6N9L3B6	HK97 gp10 family phage protein	NA
UHGV-0143251_35	eggNOG-mapper	562981.HMPREF0428_01816	NA	NA
UHGV-0143251_35	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0143251_36	PHROG	phrog_78	tail terminator	connector
UHGV-0143251_36	eggNOG-mapper	1504823.CCMM01000008_gene1036	NA	NA
UHGV-0143251_36	Structural annotation	PF05657	NA	NA
UHGV-0143251_37	PHROG	phrog_158	major tail protein	tail
UHGV-0143251_37	UniRef90	UniRef90_A0A6N9L2K6	Phage tail protein	NA
UHGV-0143251_37	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-0143251_37	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0143251_37	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0143251_38	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0143251_38	UniRef90	UniRef90_UPI0011C9B36A	NA	NA
UHGV-0143251_38	eggNOG-mapper	445974.CLORAM_02923	NA	NA
UHGV-0143251_38	Pfam	PF19591	NA	DUF6096
UHGV-0143251_38	Structural annotation	PF19591	NA	NA
UHGV-0143251_39	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0143251_39	UniRef90	UniRef90_A0A6N9L4U2	Tape measure protein	NA
UHGV-0143251_39	eggNOG-mapper	650150.ERH_0621	tape measure	NA
UHGV-0143251_39	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0143251_39	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0143251_39	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0143251_40	PHROG	phrog_1194	NA	unknown function
UHGV-0143251_40	eggNOG-mapper	1504823.CCMM01000008_gene1031	NA	NA
UHGV-0143251_40	Pfam	PF20458	NA	DUF6711
UHGV-0143251_40	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0143251_41	PHROG	phrog_15074	NA	unknown function
UHGV-0143251_41	eggNOG-mapper	445974.CLORAM_02919	cellulase activity	NA
UHGV-0143251_41	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0143251_41	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0143251_42	PHROG	phrog_30133	virion structural protein	head and packaging
UHGV-0143251_42	UniRef90	UniRef90_I7ARM6	NA	NA
UHGV-0143251_42	eggNOG-mapper	1504823.CCMM01000008_gene1029	NA	NA
UHGV-0143251_42	Structural annotation	PF14874, NF038186	NA	NA
UHGV-0143251_43	PHROG	phrog_18110	NA	unknown function
UHGV-0143251_43	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0143251_43	COG	COG4926	Phage-related protein	NA
UHGV-0143251_44	PHROG	phrog_372	tail protein	tail
UHGV-0143251_44	UniRef90	UniRef90_UPI0006C32325	NA	NA
UHGV-0143251_44	eggNOG-mapper	1211844.CBLM010000016_gene1479	NA	NA
UHGV-0143251_44	Pfam	PF05895	NA	DUF859
UHGV-0143251_44	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0143251_45	PHROG	phrog_199	holin	lysis
UHGV-0143251_45	UniRef90	UniRef90_E2NRB7	Toxin secretion/phage lysis holin	NA
UHGV-0143251_45	eggNOG-mapper	742723.HMPREF9477_00889	Bacteriophage holin family	NA
UHGV-0143251_45	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0143251_45	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0143251_45	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0143251_45	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0143251_46	PHROG	phrog_918	NA	unknown function
UHGV-0143251_46	UniRef90	UniRef90_UPI00164AB9AF	NA	NA
UHGV-0143251_46	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-0143251_46	Pfam	PF19791	NA	DUF6275
UHGV-0143251_46	Structural annotation	PF19791	NA	NA
UHGV-0143251_47	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0143251_47	UniRef90	UniRef90_UPI0018A09237	NA	NA
UHGV-0143251_47	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0143251_47	Pfam	PF14359	NA	DUF4406
UHGV-0143251_47	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA