UHGV-0143292

Genome information

Genome length 38,253 bps

CDS count 47

Completeness 100.00% (complete)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143292
vOTU ID	vOTU-046067
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_430473
BioSample	SAMN05545065
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.53
Jumbo phage	No

Genome content
Genome length	38,253 bps
GC content	41.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.43%
Average CDS length	756.19 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143292_2	PHROG	phrog_2698	NA	unknown function
UHGV-0143292_2	UniRef90	UniRef90_A0A0R2KFV1	NA	NA
UHGV-0143292_2	eggNOG-mapper	1231377.C426_1298	NA	NA
UHGV-0143292_2	Structural annotation	PF05037	NA	NA
UHGV-0143292_3	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0143292_3	UniRef90	UniRef90_UPI00195E1D01	AAA family ATPase	NA
UHGV-0143292_3	eggNOG-mapper	936580.HMPREF1516_0740	AAA domain	NA
UHGV-0143292_3	Pfam	PF13479	AAA domain	AAA_24
UHGV-0143292_3	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0143292_4	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0143292_4	PHROG	phrog_1499	NA	unknown function
UHGV-0143292_4	UniRef90	UniRef90_D1YMB3	RecF/RecN/SMC N-terminal domain protein	NA
UHGV-0143292_4	eggNOG-mapper	679192.HMPREF9013_1319	AAA ATPase domain	NA
UHGV-0143292_4	PADLOC	AAA_15	NA	NA
UHGV-0143292_4	Pfam	PF13476	AAA domain	AAA_23
UHGV-0143292_4	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0143292_4	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0143292_5	UniRef90	UniRef90_A0A380N5Z7	HTH cro/C1-type domain-containing protein	NA
UHGV-0143292_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0143292_5	Structural annotation	PF01381, NF000090, COG3655	NA	NA
UHGV-0143292_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143292_6	Structural annotation	PF21291, MF_00535, NF041951, COG3655	NA	NA
UHGV-0143292_8	PHROG	phrog_6058	NA	unknown function
UHGV-0143292_8	Structural annotation	PF09035, NF033787	NA	NA
UHGV-0143292_9	KOfam	K19232	btaE; hyaluronate-binding autotransporter adhesin	NA
UHGV-0143292_9	UniRef90	UniRef90_A0A134CAA5	Hep/Hag repeat protein	NA
UHGV-0143292_9	eggNOG-mapper	1128111.HMPREF0870_01786	Hep Hag repeat protein	NA
UHGV-0143292_9	Pfam	PF21300	Grass antifreeze beta roll	LbR_Ice_bind
UHGV-0143292_9	Pfam	PF05658	YadA head domain repeat (2 copies)	YadA_head
UHGV-0143292_9	Pfam	PF03895	YadA-like membrane anchor domain	YadA_anchor
UHGV-0143292_9	COG	COG5295	Autotransporter adhesin	NA
UHGV-0143292_9	Structural annotation	PF03895, NF033478, COG5295	NA	NA
UHGV-0143292_11	UniRef90	UniRef90_W1V8T2	NA	NA
UHGV-0143292_11	eggNOG-mapper	1347392.CCEZ01000005_gene1206	NA	NA
UHGV-0143292_11	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0143292_11	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0143292_12	UniRef90	UniRef90_S3AAF2	HTH cro/C1-type domain-containing protein	NA
UHGV-0143292_12	eggNOG-mapper	936589.HMPREF1521_1175	sequence-specific DNA binding	NA
UHGV-0143292_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143292_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0143292_12	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0143292_13	Structural annotation	PF15028, COG5342	NA	NA
UHGV-0143292_14	KOfam	K14059	int; integrase	NA
UHGV-0143292_14	PHROG	phrog_1	integrase	integration and excision
UHGV-0143292_14	UniRef90	UniRef90_A0A563DAX4	Site-specific integrase	NA
UHGV-0143292_14	eggNOG-mapper	883156.HMPREF9282_00919	Belongs to the 'phage' integrase family	NA
UHGV-0143292_14	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0143292_14	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0143292_14	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0143292_15	PHROG	phrog_18860	NA	unknown function
UHGV-0143292_16	PHROG	phrog_5867	endolysin	lysis
UHGV-0143292_16	UniRef90	UniRef90_A0A496P7H7	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0143292_16	eggNOG-mapper	1123288.SOV_2c01960	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0143292_16	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0143292_16	Structural annotation	MF_04111	NA	NA
UHGV-0143292_17	PHROG	phrog_27828	NA	unknown function
UHGV-0143292_17	UniRef90	UniRef90_F5KZP5	Conserved domain protein	NA
UHGV-0143292_17	eggNOG-mapper	546273.VEIDISOL_00738	NA	NA
UHGV-0143292_18	PHROG	phrog_22483	NA	unknown function
UHGV-0143292_18	UniRef90	UniRef90_A0A563DAK6	Lysyl-tRNA synthetase	NA
UHGV-0143292_18	eggNOG-mapper	1128111.HMPREF0870_01752	NA	NA
UHGV-0143292_18	Structural annotation	PF20622	NA	NA
UHGV-0143292_19	PHROG	phrog_1084	NA	unknown function
UHGV-0143292_19	eggNOG-mapper	546273.VEIDISOL_01075	NA	NA
UHGV-0143292_19	Structural annotation	PF17813, NF038186	NA	NA
UHGV-0143292_20	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0143292_20	UniRef90	UniRef90_A0A2S7YYZ8	Fibronectin type-III domain-containing protein	NA
UHGV-0143292_20	eggNOG-mapper	1123489.AUAN01000010_gene347	cellulase activity	NA
UHGV-0143292_20	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0143292_20	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0143292_20	Pfam	PF07495	Y_Y_Y domain	Y_Y_Y
UHGV-0143292_20	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0143292_20	COG	COG1511	NA	NA
UHGV-0143292_20	Structural annotation	PF13550, PF16383, PF00041, PF17936, PF14109, MF_04116, NF040662, NF033506, COG4733	NA	NA
UHGV-0143292_21	KOfam	K13694	mepS, spr; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]	NA
UHGV-0143292_21	PHROG	phrog_329	minor tail protein	tail
UHGV-0143292_21	UniRef90	UniRef90_A0A2S7YYZ6	NlpC/P60 domain-containing protein	NA
UHGV-0143292_21	eggNOG-mapper	1128111.HMPREF0870_01757	cysteine-type peptidase activity	NA
UHGV-0143292_21	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0143292_21	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0143292_21	Structural annotation	PF00877, NF008096, COG3234	NA	NA
UHGV-0143292_22	PHROG	phrog_18	minor tail protein	tail
UHGV-0143292_22	UniRef90	UniRef90_A0A380N670	Phage minor tail protein L	NA
UHGV-0143292_22	eggNOG-mapper	1128111.HMPREF0870_01758	Phage minor tail protein L	NA
UHGV-0143292_22	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0143292_22	COG	COG4672	Phage tail protein	NA
UHGV-0143292_22	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0143292_23	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0143292_24	PHROG	phrog_22443	NA	unknown function
UHGV-0143292_24	UniRef90	UniRef90_A0A380N6K7	Phage-related minor tail protein	NA
UHGV-0143292_24	eggNOG-mapper	1128111.HMPREF0870_01760	Putative exonuclease SbcCD, C subunit	NA
UHGV-0143292_24	COG	COG4913	NA	NA
UHGV-0143292_24	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-0143292_25	PHROG	phrog_23549	NA	unknown function
UHGV-0143292_25	UniRef90	UniRef90_F5KZN6	Conserved domain protein	NA
UHGV-0143292_26	PHROG	phrog_27248	NA	unknown function
UHGV-0143292_27	PHROG	phrog_290	minor tail protein	tail
UHGV-0143292_27	UniRef90	UniRef90_UPI001E4C5382	phage tail tube protein	NA
UHGV-0143292_27	eggNOG-mapper	1128111.HMPREF0870_01763	NA	NA
UHGV-0143292_27	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0143292_27	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-0143292_28	PHROG	phrog_17431	NA	unknown function
UHGV-0143292_28	eggNOG-mapper	1128111.HMPREF0870_01764	NA	NA
UHGV-0143292_28	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0143292_29	UniRef90	UniRef90_F5KZN2	Conserved domain protein	NA
UHGV-0143292_29	eggNOG-mapper	1128111.HMPREF0870_01765	NA	NA
UHGV-0143292_29	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-0143292_30	PHROG	phrog_27032	NA	unknown function
UHGV-0143292_30	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-0143292_31	PHROG	phrog_122	head decoration	head and packaging
UHGV-0143292_31	UniRef90	UniRef90_A0A443JDB0	NA	NA
UHGV-0143292_31	Pfam	PF09956	NA	DUF2190
UHGV-0143292_31	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-0143292_31	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0143292_32	KOfam	K06904	NA	NA
UHGV-0143292_32	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0143292_32	UniRef90	UniRef90_F5KZM9	Caudovirus prohead protease	NA
UHGV-0143292_32	eggNOG-mapper	1128111.HMPREF0870_01768	Caudovirus prohead protease	NA
UHGV-0143292_32	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0143292_32	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0143292_32	COG	COG3087	Cell division protein FtsN	NA
UHGV-0143292_32	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0143292_33	PHROG	phrog_21	portal protein	head and packaging
UHGV-0143292_33	UniRef90	UniRef90_A0A380N598	Phage portal protein, lambda family	NA
UHGV-0143292_33	eggNOG-mapper	1128111.HMPREF0870_01769	Phage portal protein, lambda family	NA
UHGV-0143292_33	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0143292_33	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0143292_33	COG	COG5511	Phage capsid protein	NA
UHGV-0143292_33	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0143292_34	PHROG	phrog_20307	NA	unknown function
UHGV-0143292_34	UniRef90	UniRef90_F5KZM7	Conserved domain protein	NA
UHGV-0143292_34	Structural annotation	PF19645, COG1382	NA	NA
UHGV-0143292_35	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0143292_35	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0143292_35	UniRef90	UniRef90_A0A380N7T6	Bacteriophage tail assembly protein	NA
UHGV-0143292_35	eggNOG-mapper	1128111.HMPREF0870_01771	Phage terminase large subunit (GpA)	NA
UHGV-0143292_35	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0143292_35	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0143292_35	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0143292_35	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0143292_35	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0143292_36	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0143292_36	eggNOG-mapper	1128111.HMPREF0870_01772	transposase activity	NA
UHGV-0143292_36	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0143292_36	Structural annotation	PF07471, COG4220	NA	NA
UHGV-0143292_37	Pfam	PF07374	NA	DUF1492
UHGV-0143292_40	PHROG	phrog_236	nucleotide kinase	other
UHGV-0143292_40	UniRef90	UniRef90_UPI001D0A2658	NA	NA
UHGV-0143292_40	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-0143292_40	Pfam	PF11753	NA	DUF3310
UHGV-0143292_40	Structural annotation	PF11753	NA	NA
UHGV-0143292_41	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0143292_41	UniRef90	UniRef90_A0A2S7ZCM0	NA	NA
UHGV-0143292_41	eggNOG-mapper	883156.HMPREF9282_01229	NA	NA
UHGV-0143292_41	Pfam	PF14359	NA	DUF4406
UHGV-0143292_41	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0143292_42	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0143292_42	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0143292_42	UniRef90	UniRef90_D1YMB8	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0143292_42	eggNOG-mapper	1123315.AUIP01000003_gene219	crossover junction endodeoxyribonuclease RusA	NA
UHGV-0143292_42	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0143292_42	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0143292_45	PHROG	phrog_1672	NA	unknown function
UHGV-0143292_45	UniRef90	UniRef90_F5L204	Conserved domain protein	NA
UHGV-0143292_46	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0143292_46	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0143292_46	UniRef90	UniRef90_D1YMB7	Primase C terminal 2 (PriCT-2)	NA
UHGV-0143292_46	eggNOG-mapper	999413.HMPREF1094_00232	Primase C terminal 2 (PriCT-2)	NA
UHGV-0143292_46	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0143292_46	Pfam	PF13481	AAA domain	AAA_25
UHGV-0143292_46	COG	COG3598	RecA-family ATPase	NA
UHGV-0143292_46	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0143292_47	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0143292_47	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0143292_47	UniRef90	UniRef90_D1YMB6	Helicase C-terminal domain protein	NA
UHGV-0143292_47	eggNOG-mapper	742723.HMPREF9477_00926	helicase superfamily c-terminal domain	NA
UHGV-0143292_47	PADLOC	mREase_IV_00004	Type IV methyl-directed restriction enzyme	RM
UHGV-0143292_47	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0143292_47	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0143292_47	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0143292_47	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA