UHGV-0143308

Genome information

Genome length 31,386 bps

CDS count 70

Completeness 54.45% (medium-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143308
vOTU ID	vOTU-034160
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_401075
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.45% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.79
Jumbo phage	No

Genome content
Genome length	31,386 bps
GC content	47.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	79.38%
Average CDS length	359.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143308_1	eggNOG-mapper	657322.FPR_13550	Bacterial Ig-like domain (group 2)	NA
UHGV-0143308_1	COG	COG5492	NA	NA
UHGV-0143308_2	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0143308_2	PHROG	phrog_5240	tail fiber protein	tail
UHGV-0143308_2	UniRef90	UniRef90_A0A3E2TYR6	SGNH/GDSL hydrolase family protein	NA
UHGV-0143308_2	eggNOG-mapper	411463.EUBVEN_01828	lipolytic protein G-D-S-L family	NA
UHGV-0143308_2	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0143308_2	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0143308_2	Structural annotation	PF16255, NF007819, COG2755	NA	NA
UHGV-0143308_3	KOfam	K07273	acm; lysozyme	NA
UHGV-0143308_3	PHROG	phrog_291	endolysin	lysis
UHGV-0143308_3	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0143308_3	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0143308_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0143308_3	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0143308_3	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0143308_4	PHROG	phrog_1863	NA	unknown function
UHGV-0143308_4	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0143308_5	PHROG	phrog_15303	NA	unknown function
UHGV-0143308_7	PHROG	phrog_5765	NA	unknown function
UHGV-0143308_7	UniRef90	UniRef90_UPI001D0EF465	BC1881 family protein	NA
UHGV-0143308_7	eggNOG-mapper	748727.CLJU_c31430	NA	NA
UHGV-0143308_7	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-0143308_11	Pfam	PF04448	NA	DUF551
UHGV-0143308_12	Structural annotation	MF_00273	NA	NA
UHGV-0143308_16	Structural annotation	PF07878	NA	NA
UHGV-0143308_17	Pfam	PF04448	NA	DUF551
UHGV-0143308_17	Structural annotation	NF041588	NA	NA
UHGV-0143308_18	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0143308_18	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0143308_18	UniRef90	UniRef90_W1I1L7	Uncultured bacterium extrachromosomal DNA RGI00032	NA
UHGV-0143308_18	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0143308_18	Pfam	PF13614	AAA domain	AAA_31
UHGV-0143308_18	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0143308_18	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0143308_19	PHROG	phrog_7704	NA	unknown function
UHGV-0143308_19	Pfam	PF04448	NA	DUF551
UHGV-0143308_20	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0143308_20	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0143308_20	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0143308_20	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0143308_20	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0143308_20	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0143308_20	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-0143308_21	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0143308_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143308_21	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0143308_25	Structural annotation	PF16311, NF038219	NA	NA
UHGV-0143308_26	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0143308_26	UniRef90	UniRef90_UPI001D05D211	helix-turn-helix transcriptional regulator	NA
UHGV-0143308_26	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0143308_26	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0143308_26	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0143308_27	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0143308_27	UniRef90	UniRef90_UPI001956DCC9	helix-turn-helix transcriptional regulator	NA
UHGV-0143308_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143308_27	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0143308_28	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0143308_28	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0143308_28	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0143308_28	eggNOG-mapper	1449343.JQLQ01000002_gene1368	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0143308_28	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0143308_28	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0143308_28	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0143308_28	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0143308_28	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0143308_29	Structural annotation	PF10922	NA	NA
UHGV-0143308_30	Structural annotation	TIGR03826	NA	NA
UHGV-0143308_31	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0143308_31	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0143308_33	Structural annotation	PF14143	NA	NA
UHGV-0143308_34	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0143308_34	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0143308_34	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0143308_36	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0143308_36	UniRef90	UniRef90_A0A3G2N781	HNH endonuclease	NA
UHGV-0143308_36	eggNOG-mapper	232237.Q7Y5F9_9CAUD	HNH endonuclease	NA
UHGV-0143308_36	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0143308_37	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0143308_37	UniRef90	UniRef90_UPI00130EB09C	ERF family protein	NA
UHGV-0143308_37	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0143308_37	Pfam	PF04404	ERF superfamily	ERF
UHGV-0143308_37	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0143308_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0143308_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0143308_38	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0143308_38	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0143308_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0143308_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0143308_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0143308_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0143308_38	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0143308_39	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0143308_39	UniRef90	UniRef90_UPI001A9B5584	DNA cytosine methyltransferase	NA
UHGV-0143308_39	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0143308_39	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0143308_39	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0143308_41	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0143308_41	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0143308_41	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0143308_41	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0143308_42	PHROG	phrog_30930	NA	unknown function
UHGV-0143308_42	eggNOG-mapper	1214184.ALKY01000039_gene933	NA	NA
UHGV-0143308_42	Structural annotation	PF05037	NA	NA
UHGV-0143308_44	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0143308_47	UniRef90	UniRef90_A0A810Q569	NA	NA
UHGV-0143308_47	Pfam	PF04448	NA	DUF551
UHGV-0143308_47	Structural annotation	PF04448	NA	NA
UHGV-0143308_48	UniRef90	UniRef90_UPI000D6522D3	NA	NA
UHGV-0143308_48	Pfam	PF04448	NA	DUF551
UHGV-0143308_48	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0143308_49	Structural annotation	PF16677	NA	NA
UHGV-0143308_54	PHROG	phrog_11947	NA	unknown function
UHGV-0143308_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143308_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0143308_54	Structural annotation	PF01381, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-0143308_58	Structural annotation	NF041588	NA	NA
UHGV-0143308_59	Pfam	PF04448	NA	DUF551
UHGV-0143308_59	Structural annotation	NF041588	NA	NA
UHGV-0143308_61	UniRef90	UniRef90_Q5YA82	28	NA
UHGV-0143308_62	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0143308_62	Pfam	PF19808	NA	DUF6291
UHGV-0143308_62	Structural annotation	PF19808	NA	NA
UHGV-0143308_63	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0143308_63	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0143308_63	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0143308_63	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0143308_63	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0143308_63	COG	COG0305	Replicative DNA helicase	NA
UHGV-0143308_63	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0143308_66	Structural annotation	PF10735, COG4483	NA	NA
UHGV-0143308_67	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0143308_67	eggNOG-mapper	742738.HMPREF9460_00717	YqaJ viral recombinase family	NA
UHGV-0143308_67	COG	COG5377	Phage-related protein, predicted endonuclease	NA