UHGV-0143329

Genome information

vOTU vOTU-019617

Genome length 27,289 bps

CDS count 43

Completeness 57.57% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143329
vOTU ID	vOTU-019617
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_433510
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.57% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.77
Jumbo phage	No

Genome content
Genome length	27,289 bps
GC content	58.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	94.42%
Average CDS length	603.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143329_1	COG	COG3291	NA	NA
UHGV-0143329_2	PHROG	phrog_1220	head protein	head and packaging
UHGV-0143329_2	UniRef90	UniRef90_A0A6B3YJZ4	Phage tail protein (Fragment)	NA
UHGV-0143329_2	eggNOG-mapper	394503.Ccel_0827	NA	NA
UHGV-0143329_2	Structural annotation	PF20747	NA	NA
UHGV-0143329_3	PHROG	phrog_538	minor tail protein	tail
UHGV-0143329_3	UniRef90	UniRef90_A0A8J6IQQ3	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0143329_3	eggNOG-mapper	755731.Clo1100_0557	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0143329_3	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0143329_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0143329_4	PHROG	phrog_36410	NA	unknown function
UHGV-0143329_4	UniRef90	UniRef90_UPI00164AD3F2	phage tail family protein	NA
UHGV-0143329_4	eggNOG-mapper	755731.Clo1100_3575	Phage tail protein	NA
UHGV-0143329_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0143329_4	Structural annotation	PF16774, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0143329_5	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0143329_5	eggNOG-mapper	1216932.CM240_0683	tape measure	NA
UHGV-0143329_5	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0143329_5	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0143329_5	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0143329_5	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0143329_6	PHROG	phrog_706	NA	unknown function
UHGV-0143329_6	UniRef90	UniRef90_A0A174K5P2	Bacteriophage Gp15 protein	NA
UHGV-0143329_6	eggNOG-mapper	411471.SUBVAR_06986	Bacteriophage Gp15 protein	NA
UHGV-0143329_6	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0143329_6	Structural annotation	PF06854	NA	NA
UHGV-0143329_8	PHROG	phrog_3099	NA	unknown function
UHGV-0143329_8	eggNOG-mapper	742723.HMPREF9477_00900	NA	NA
UHGV-0143329_8	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0143329_9	PHROG	phrog_3266	tail completion	connector
UHGV-0143329_9	Structural annotation	PF12691	NA	NA
UHGV-0143329_10	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0143329_10	UniRef90	UniRef90_A0A6L5YLT4	Capsid protein	NA
UHGV-0143329_10	eggNOG-mapper	525255.HMPREF0077_0381	Minor capsid protein	NA
UHGV-0143329_11	Pfam	PF20536	NA	DUF6751
UHGV-0143329_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0143329_13	PHROG	phrog_422	major head protein	head and packaging
UHGV-0143329_13	UniRef90	UniRef90_A0A345MKD0	Main capsid protein	NA
UHGV-0143329_13	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0143329_13	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0143329_14	UniRef90	UniRef90_A0A1C6B5I1	Phage minor structural protein GP20	NA
UHGV-0143329_14	Structural annotation	PF06810	NA	NA
UHGV-0143329_15	PHROG	phrog_6332	NA	unknown function
UHGV-0143329_15	UniRef90	UniRef90_E2ZIH6	Cys_rich_CPCC domain-containing protein	NA
UHGV-0143329_15	eggNOG-mapper	748224.HMPREF9436_01470	Cysteine-rich CPCC	NA
UHGV-0143329_15	Pfam	PF14206	Cysteine-rich CPCC	Cys_rich_CPCC
UHGV-0143329_15	Structural annotation	PF14206	NA	NA
UHGV-0143329_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0143329_16	UniRef90	UniRef90_A0A136WBX5	Phage minor capsid protein 2	NA
UHGV-0143329_16	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0143329_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0143329_16	COG	COG2369	NA	NA
UHGV-0143329_17	PHROG	phrog_533	portal protein	head and packaging
UHGV-0143329_17	UniRef90	UniRef90_A0A136WBU7	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0143329_17	eggNOG-mapper	663278.Ethha_0500	NA	NA
UHGV-0143329_17	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0143329_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0143329_18	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0143329_18	UniRef90	UniRef90_A0A396NWZ4	PBSX family phage terminase large subunit	NA
UHGV-0143329_18	eggNOG-mapper	246194.CHY_1680	Terminase RNAseH like domain	NA
UHGV-0143329_18	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0143329_18	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0143329_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0143329_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0143329_18	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0143329_19	COG	COG5484	NA	NA
UHGV-0143329_20	PHROG	phrog_11237	NA	unknown function
UHGV-0143329_20	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-0143329_23	PHROG	phrog_38832	NA	unknown function
UHGV-0143329_23	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-0143329_26	eggNOG-mapper	1203606.HMPREF1526_00240	NA	NA
UHGV-0143329_29	PHROG	phrog_13321	NA	unknown function
UHGV-0143329_29	UniRef90	UniRef90_UPI00030D2C45	radical SAM protein	NA
UHGV-0143329_29	eggNOG-mapper	1007096.BAGW01000031_gene122	PFAM Radical SAM	NA
UHGV-0143329_29	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0143329_29	COG	COG1533	DNA repair photolyase	NA
UHGV-0143329_29	Structural annotation	PF20903, MF_00917, NF033668, COG4422	NA	NA
UHGV-0143329_30	PHROG	phrog_474	phosphofructokinase	other
UHGV-0143329_30	UniRef90	UniRef90_A0A2V2EHL9	NA	NA
UHGV-0143329_30	eggNOG-mapper	1203606.HMPREF1526_00237	NA	NA
UHGV-0143329_30	Pfam	PF19905	NA	DUF6378
UHGV-0143329_30	Structural annotation	PF19905	NA	NA
UHGV-0143329_31	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0143329_31	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0143329_31	UniRef90	UniRef90_UPI001EDDCEC9	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0143329_31	eggNOG-mapper	1125712.HMPREF1316_1543	Endodeoxyribonuclease RusA	NA
UHGV-0143329_31	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0143329_31	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0143329_32	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0143329_32	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0143329_32	UniRef90	UniRef90_A0A4V1BEM8	Replicative DNA helicase	NA
UHGV-0143329_32	eggNOG-mapper	644966.Tmar_2350	Participates in initiation and elongation during chromosome replication	NA
UHGV-0143329_32	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0143329_32	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0143329_32	COG	COG0305	Replicative DNA helicase	NA
UHGV-0143329_32	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0143329_33	PHROG	phrog_16304	NA	unknown function
UHGV-0143329_33	Pfam	PF19808	NA	DUF6291
UHGV-0143329_33	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0143329_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0143329_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0143329_34	UniRef90	UniRef90_A0A645IP15	Single-stranded DNA-binding protein	NA
UHGV-0143329_34	eggNOG-mapper	445971.ANASTE_01949	Single-stranded DNA-binding protein	NA
UHGV-0143329_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0143329_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0143329_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0143329_34	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0143329_34	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0143329_35	PHROG	phrog_398	NA	unknown function
UHGV-0143329_35	UniRef90	UniRef90_K1U9S1	NA	NA
UHGV-0143329_35	eggNOG-mapper	936573.HMPREF1147_1303	Putative HNHc nuclease	NA
UHGV-0143329_35	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0143329_35	Structural annotation	PF16784	NA	NA
UHGV-0143329_36	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0143329_36	UniRef90	UniRef90_UPI001F3B451F	ERF family protein	NA
UHGV-0143329_36	eggNOG-mapper	754331.AEME01000001_gene3599	ERF superfamily	NA
UHGV-0143329_36	Pfam	PF04404	ERF superfamily	ERF
UHGV-0143329_37	PHROG	phrog_2205	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0143329_37	UniRef90	UniRef90_A0A4R7KUW2	Gam-like protein	NA
UHGV-0143329_37	eggNOG-mapper	203119.Cthe_2464	Bacteriophage Mu Gam like protein	NA
UHGV-0143329_37	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0143329_37	Structural annotation	PF07352	NA	NA
UHGV-0143329_43	UniRef90	UniRef90_A0A174CLB4	HTH_8 domain-containing protein	NA
UHGV-0143329_43	eggNOG-mapper	1121335.Clst_0370	NA	NA