UHGV-0143337

Genome information

vOTU vOTU-062071

Genome length 14,359 bps

CDS count 25

Completeness 99.90% (high-quality)

geNomad score 0.9624

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143337
vOTU ID	vOTU-062071
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_439366
BioSample	SAMN06016382
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9624
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.58
Jumbo phage	No

Genome content
Genome length	14,359 bps
GC content	51.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	83.65%
Average CDS length	485.16 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143337_1	KOfam	K14059	int; integrase	NA
UHGV-0143337_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0143337_1	UniRef90	UniRef90_UPI001F33A9B4	site-specific integrase	NA
UHGV-0143337_1	eggNOG-mapper	877414.ATWA01000018_gene2094	Phage integrase family	NA
UHGV-0143337_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0143337_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0143337_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0143337_1	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0143337_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0143337_2	UniRef90	UniRef90_A0A096CPZ1	HTH cro/C1-type domain-containing protein	NA
UHGV-0143337_2	eggNOG-mapper	742738.HMPREF9460_00731	Helix-turn-helix XRE-family like proteins	NA
UHGV-0143337_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143337_3	PHROG	phrog_17740	NA	unknown function
UHGV-0143337_3	UniRef90	UniRef90_A0A1C5Z6R1	HTH lacI-type domain-containing protein	NA
UHGV-0143337_3	eggNOG-mapper	742738.HMPREF9460_00730	NA	NA
UHGV-0143337_3	Structural annotation	PF13560, COG3423	NA	NA
UHGV-0143337_4	UniRef90	UniRef90_R5S0R2	Excisionase family DNA binding domain-containing protein	NA
UHGV-0143337_4	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0143337_4	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0143337_4	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0143337_5	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0143337_5	UniRef90	UniRef90_A0A143Z9E6	Phage_rep_org_N domain-containing protein	NA
UHGV-0143337_5	eggNOG-mapper	796940.HMPREF9628_00167	NA	NA
UHGV-0143337_5	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0143337_6	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0143337_6	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0143337_6	UniRef90	UniRef90_UPI001C111256	AAA family ATPase	NA
UHGV-0143337_6	eggNOG-mapper	1121020.JIAG01000005_gene2356	Participates in initiation and elongation during chromosome replication	NA
UHGV-0143337_6	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0143337_6	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0143337_6	COG	COG0305	Replicative DNA helicase	NA
UHGV-0143337_6	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0143337_9	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0143337_9	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0143337_9	UniRef90	UniRef90_UPI001F4290AF	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0143337_9	COG	COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	NA
UHGV-0143337_9	Structural annotation	PF07638, MF_00959, NF006147, COG0568	NA	NA
UHGV-0143337_10	UniRef90	UniRef90_A0A412AWV1	Helix-turn-helix domain-containing protein	NA
UHGV-0143337_10	eggNOG-mapper	439235.Dalk_5237	NA	NA
UHGV-0143337_10	Structural annotation	NF041728	NA	NA
UHGV-0143337_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0143337_11	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0143337_11	UniRef90	UniRef90_A0A6N7TQ80	PBSX family phage terminase large subunit	NA
UHGV-0143337_11	eggNOG-mapper	397291.C804_01612	Phage terminase large subunit	NA
UHGV-0143337_11	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0143337_11	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0143337_11	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0143337_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-0143337_11	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0143337_12	eggNOG-mapper	397291.C804_01613	NA	NA
UHGV-0143337_17	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0143337_17	UniRef90	UniRef90_A0A4U7JDN1	Phage tail tape measure protein	NA
UHGV-0143337_17	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-0143337_17	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0143337_20	Structural annotation	NF041070	NA	NA
UHGV-0143337_24	UniRef90	UniRef90_A0A1C5V1R5	Predicted transcriptional regulator	NA
UHGV-0143337_24	eggNOG-mapper	394503.Ccel_3173	NA	NA
UHGV-0143337_24	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0143337_24	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0143337_25	PHROG	phrog_4776	NA	unknown function
UHGV-0143337_25	eggNOG-mapper	394503.Ccel_2964	mRNA catabolic process	NA
UHGV-0143337_25	COG	COG1418	HD superfamily phosphodieaserase, includes HD domain of RNase Y	NA