UHGV-0143408

Genome information

Genome length 36,108 bps

CDS count 49

Completeness 93.92% (high-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143408
vOTU ID	vOTU-069558
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_397997
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.92% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	75.99
Jumbo phage	No

Genome content
Genome length	36,108 bps
GC content	48.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	91.85%
Average CDS length	680.45 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143408_3	KOfam	K14059	int; integrase	NA
UHGV-0143408_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0143408_3	UniRef90	UniRef90_UPI0005AA7FA8	site-specific integrase	NA
UHGV-0143408_3	eggNOG-mapper	1378168.N510_03298	Belongs to the 'phage' integrase family	NA
UHGV-0143408_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0143408_3	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0143408_3	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0143408_5	PHROG	phrog_9151	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UHGV-0143408_5	UniRef90	UniRef90_UPI0009E36456	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0143408_5	eggNOG-mapper	1392502.JNIO01000008_gene1606	protein encoded in hypervariable junctions of pilus gene clusters	NA
UHGV-0143408_5	Pfam	PF05534	HicB family	HicB
UHGV-0143408_5	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-0143408_5	Structural annotation	PF21748, PF07878, NF041264, COG4226	NA	NA
UHGV-0143408_6	PHROG	phrog_8887	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0143408_6	UniRef90	UniRef90_A0A4Q3EI93	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0143408_6	eggNOG-mapper	1268240.ATFI01000008_gene2583	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0143408_6	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0143408_6	Structural annotation	COG1724	NA	NA
UHGV-0143408_7	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0143408_7	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0143408_7	UniRef90	UniRef90_R5Y1G1	Putative phage repressor	NA
UHGV-0143408_7	eggNOG-mapper	1262914.BN533_00809	Peptidase S24-like	NA
UHGV-0143408_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143408_7	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0143408_7	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0143408_7	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0143408_8	UniRef90	UniRef90_A0A348Z948	Transcriptional regulator	NA
UHGV-0143408_8	eggNOG-mapper	1262914.BN533_00808	NA	NA
UHGV-0143408_8	Pfam	PF05339	NA	DUF739
UHGV-0143408_8	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0143408_10	PHROG	phrog_585	NA	unknown function
UHGV-0143408_10	UniRef90	UniRef90_UPI001C2179E8	NA	NA
UHGV-0143408_10	eggNOG-mapper	482234.SCAZ3_03560	NA	NA
UHGV-0143408_10	Pfam	PF10711	NA	DUF2513
UHGV-0143408_10	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0143408_12	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0143408_12	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0143408_12	UniRef90	UniRef90_A0A1C5P786	Phage anti-repressor protein	NA
UHGV-0143408_12	eggNOG-mapper	1414720.CBYM010000005_gene1349	Phage antirepressor protein KilAC domain	NA
UHGV-0143408_12	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0143408_12	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0143408_12	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0143408_12	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0143408_14	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0143408_14	PHROG	phrog_18750	NA	unknown function
UHGV-0143408_14	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-0143408_14	eggNOG-mapper	1519439.JPJG01000051_gene725	Cell wall hydrolase	NA
UHGV-0143408_14	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0143408_14	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0143408_14	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0143408_18	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0143408_18	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0143408_18	UniRef90	UniRef90_R6HY73	HTH cro/C1-type domain-containing protein	NA
UHGV-0143408_18	eggNOG-mapper	457412.RSAG_04663	sequence-specific DNA binding	NA
UHGV-0143408_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143408_18	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0143408_18	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0143408_19	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0143408_19	PHROG	phrog_1499	NA	unknown function
UHGV-0143408_19	UniRef90	UniRef90_R6IXY5	AAA_15 domain-containing protein	NA
UHGV-0143408_19	eggNOG-mapper	411462.DORLON_00812	AAA ATPase domain	NA
UHGV-0143408_19	PADLOC	AAA_15	NA	NA
UHGV-0143408_19	Pfam	PF13476	AAA domain	AAA_23
UHGV-0143408_19	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0143408_19	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0143408_20	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0143408_20	UniRef90	UniRef90_UPI001411FE86	ATP-binding protein	NA
UHGV-0143408_20	eggNOG-mapper	394503.Ccel_3309	AAA domain	NA
UHGV-0143408_20	Pfam	PF13479	AAA domain	AAA_24
UHGV-0143408_20	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0143408_21	PHROG	phrog_2698	NA	unknown function
UHGV-0143408_21	UniRef90	UniRef90_A0A417IL23	NA	NA
UHGV-0143408_21	eggNOG-mapper	1123511.KB905868_gene200	NA	NA
UHGV-0143408_21	Structural annotation	PF05037	NA	NA
UHGV-0143408_22	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0143408_22	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0143408_22	UniRef90	UniRef90_R6I0L6	Type III restriction protein res subunit	NA
UHGV-0143408_22	eggNOG-mapper	478749.BRYFOR_07586	helicase	NA
UHGV-0143408_22	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0143408_22	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0143408_22	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0143408_22	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0143408_22	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0143408_23	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0143408_23	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0143408_23	UniRef90	UniRef90_A0A1C6CSE0	Regulatory protein repA	NA
UHGV-0143408_23	eggNOG-mapper	552396.HMPREF0863_02435	Primase C terminal 2 (PriCT-2)	NA
UHGV-0143408_23	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0143408_23	Pfam	PF13481	AAA domain	AAA_25
UHGV-0143408_23	COG	COG3598	RecA-family ATPase	NA
UHGV-0143408_23	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0143408_24	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0143408_24	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0143408_24	UniRef90	UniRef90_R6HY68	Endodeoxyribonuclease RusA	NA
UHGV-0143408_24	eggNOG-mapper	394503.Ccel_3302	endodeoxyribonuclease RusA	NA
UHGV-0143408_24	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0143408_24	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0143408_24	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0143408_25	Structural annotation	NF001606	NA	NA
UHGV-0143408_26	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0143408_26	UniRef90	UniRef90_UPI0004115370	methyltransferase	NA
UHGV-0143408_26	eggNOG-mapper	1280698.AUJS01000007_gene1028	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0143408_26	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0143408_26	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0143408_26	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0143408_27	PHROG	phrog_8684	NA	unknown function
UHGV-0143408_27	UniRef90	UniRef90_UPI0011A28856	YopX family protein	NA
UHGV-0143408_27	eggNOG-mapper	478749.BRYFOR_07591	YopX protein	NA
UHGV-0143408_27	Pfam	PF09643	YopX protein	YopX
UHGV-0143408_27	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0143408_27	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0143408_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0143408_28	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-0143408_28	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-0143408_28	Structural annotation	PF04545	NA	NA
UHGV-0143408_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0143408_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0143408_30	UniRef90	UniRef90_R7GUG8	Prophage LambdaCh01 terminase small subunit	NA
UHGV-0143408_30	eggNOG-mapper	608534.GCWU000341_02298	Terminase small subunit	NA
UHGV-0143408_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0143408_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0143408_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0143408_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0143408_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0143408_31	UniRef90	UniRef90_R6I0M1	Phage terminase large subunit PBSX family	NA
UHGV-0143408_31	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-0143408_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0143408_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0143408_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0143408_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0143408_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0143408_32	PHROG	phrog_64	portal protein	head and packaging
UHGV-0143408_32	UniRef90	UniRef90_R6IBR5	Phage portal protein	NA
UHGV-0143408_32	eggNOG-mapper	97138.C820_00238	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0143408_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0143408_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0143408_33	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0143408_33	UniRef90	UniRef90_A0A3D2QEP6	Phage_Mu_F domain-containing protein	NA
UHGV-0143408_33	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0143408_33	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0143408_33	Pfam	PF14424	The BURPS668_1122 family of deaminases	Toxin-deaminase
UHGV-0143408_33	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0143408_33	COG	COG2369	NA	NA
UHGV-0143408_33	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0143408_35	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0143408_35	UniRef90	UniRef90_UPI001651708C	phage scaffolding protein	NA
UHGV-0143408_35	eggNOG-mapper	1196028.ALEF01000043_gene465	Phage minor structural protein GP20	NA
UHGV-0143408_35	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0143408_36	PHROG	phrog_283	major head protein	head and packaging
UHGV-0143408_36	UniRef90	UniRef90_UPI001896DBE2	P22 coat protein	NA
UHGV-0143408_36	eggNOG-mapper	1297617.JPJD01000059_gene2633	P22 coat protein - gene protein 5	NA
UHGV-0143408_36	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0143408_36	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0143408_37	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0143408_37	UniRef90	UniRef90_R6I6I7	NA	NA
UHGV-0143408_37	eggNOG-mapper	268407.PWYN_03015	NA	NA
UHGV-0143408_38	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0143408_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0143408_39	UniRef90	UniRef90_R6IVT6	Bacteriophage protein PF04883 family	NA
UHGV-0143408_39	eggNOG-mapper	1280692.AUJL01000025_gene2076	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0143408_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0143408_39	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0143408_39	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0143408_40	Structural annotation	PF05657	NA	NA
UHGV-0143408_41	PHROG	phrog_158	major tail protein	tail
UHGV-0143408_41	UniRef90	UniRef90_R6HYI8	Major tail protein putative	NA
UHGV-0143408_41	eggNOG-mapper	1209989.TepiRe1_1157	Phage tail tube protein, TTP	NA
UHGV-0143408_41	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-0143408_41	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0143408_42	UniRef90	UniRef90_UPI0012BCDD8A	NA	NA
UHGV-0143408_42	eggNOG-mapper	1211844.CBLM010000016_gene1484	NA	NA
UHGV-0143408_42	Structural annotation	PF19591	NA	NA
UHGV-0143408_43	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0143408_43	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-0143408_43	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0143408_44	PHROG	phrog_26910	NA	unknown function
UHGV-0143408_44	eggNOG-mapper	1117958.PE143B_0109845	NA	NA
UHGV-0143408_45	PHROG	phrog_1194	NA	unknown function
UHGV-0143408_45	UniRef90	UniRef90_A0A0R1Q5P9	NA	NA
UHGV-0143408_45	eggNOG-mapper	1400520.LFAB_05290	NA	NA
UHGV-0143408_45	Pfam	PF20458	NA	DUF6711
UHGV-0143408_45	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0143408_46	PHROG	phrog_6616	tail protein	tail
UHGV-0143408_46	UniRef90	UniRef90_A0A0J1FXD9	Peptidase S74 domain-containing protein	NA
UHGV-0143408_46	eggNOG-mapper	1294142.CINTURNW_1042	Phage minor structural protein	NA
UHGV-0143408_46	COG	COG4926	Phage-related protein	NA
UHGV-0143408_46	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0143408_48	Structural annotation	PF10651, NF009453	NA	NA