UHGV-0143465

Genome information

Genome length 33,609 bps

CDS count 43

Completeness 76.74% (medium-quality)

geNomad score 0.9635

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143465
vOTU ID	vOTU-035103
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_421022
BioSample	NA
Country	Russia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.74% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	3
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9635
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.2
Jumbo phage	No

Genome content
Genome length	33,609 bps
GC content	46.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	92.09%
Average CDS length	726.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143465_1	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0143465_1	PHROG	phrog_28718	NA	unknown function
UHGV-0143465_1	UniRef90	UniRef90_E4M7Z8	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0143465_1	eggNOG-mapper	1203611.KB894547_gene2588	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0143465_1	PADLOC	MTase_II_00054	Type II methyltransferase	RM
UHGV-0143465_1	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0143465_1	COG	COG0338	DNA-adenine methylase	NA
UHGV-0143465_1	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA
UHGV-0143465_2	PHROG	phrog_17790	NA	unknown function
UHGV-0143465_2	eggNOG-mapper	908612.HMPREF9720_0691	NA	NA
UHGV-0143465_3	eggNOG-mapper	1203611.KB894547_gene2587	NA	NA
UHGV-0143465_3	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0143465_4	PHROG	phrog_20504	NA	unknown function
UHGV-0143465_4	eggNOG-mapper	1203611.KB894547_gene2586	NA	NA
UHGV-0143465_5	PHROG	phrog_21662	NA	unknown function
UHGV-0143465_5	eggNOG-mapper	1120966.AUBU01000006_gene3211	NA	NA
UHGV-0143465_6	Structural annotation	PF03414, NF009924	NA	NA
UHGV-0143465_7	PHROG	phrog_19897	NA	unknown function
UHGV-0143465_7	eggNOG-mapper	1203611.KB894547_gene2584	NA	NA
UHGV-0143465_7	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0143465_8	eggNOG-mapper	1203611.KB894547_gene2583	NA	NA
UHGV-0143465_8	Structural annotation	PF05065, MF_04119, TIGR01551, COG4653	NA	NA
UHGV-0143465_9	KOfam	K21511	GPC; capsid assembly protease [EC:3.4.21.-]	NA
UHGV-0143465_9	PHROG	phrog_53	head maturation protease	head and packaging
UHGV-0143465_9	UniRef90	UniRef90_A0A1Q6FXC4	Peptidase_S49 domain-containing protein	NA
UHGV-0143465_9	eggNOG-mapper	1203611.KB894547_gene2582	Peptidase, S49 (Protease IV) family protein	NA
UHGV-0143465_9	Pfam	PF01343	Peptidase family S49	Peptidase_S49
UHGV-0143465_9	COG	COG0616	Periplasmic serine protease, ClpP class	NA
UHGV-0143465_9	Structural annotation	PF01343, MF_01051, TIGR00706, COG0616	NA	NA
UHGV-0143465_15	Structural annotation	NF011227	NA	NA
UHGV-0143465_18	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0143465_18	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0143465_18	UniRef90	UniRef90_A0A4Y1WJ30	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0143465_18	eggNOG-mapper	1203611.KB894547_gene2576	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0143465_18	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0143465_18	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0143465_18	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0143465_18	Structural annotation	PF00145, MF_02100, TIGR00675, COG0270	NA	NA
UHGV-0143465_19	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0143465_19	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0143465_19	UniRef90	UniRef90_UPI0018A96DED	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0143465_19	eggNOG-mapper	1203611.KB894547_gene2575	sulfate reduction	NA
UHGV-0143465_19	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0143465_19	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0143465_19	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0143465_20	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0143465_20	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0143465_20	UniRef90	UniRef90_E4M7Y9	D12 class N6 adenine-specific DNA methyltransferase (Fragment)	NA
UHGV-0143465_20	eggNOG-mapper	908612.HMPREF9720_0683	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0143465_20	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0143465_20	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0143465_20	COG	COG0338	DNA-adenine methylase	NA
UHGV-0143465_20	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0143465_21	PHROG	phrog_874	NA	unknown function
UHGV-0143465_21	eggNOG-mapper	1033732.CAHI01000035_gene2756	NA	NA
UHGV-0143465_21	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0143465_23	eggNOG-mapper	742725.HMPREF9450_02087	NA	NA
UHGV-0143465_24	UniRef90	UniRef90_UPI0018A06539	helix-turn-helix transcriptional regulator	NA
UHGV-0143465_24	eggNOG-mapper	908612.HMPREF9720_2450	NA	NA
UHGV-0143465_24	Structural annotation	NF041951, COG1396	NA	NA
UHGV-0143465_25	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0143465_25	PHROG	phrog_6444	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0143465_25	UniRef90	UniRef90_E4MB13	DNA primase	NA
UHGV-0143465_25	eggNOG-mapper	908612.HMPREF9720_2451	DNA primase catalytic core, N-terminal domain	NA
UHGV-0143465_25	PADLOC	drt-UG29	DRT	DRT
UHGV-0143465_25	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0143465_25	Pfam	PF08275	DNA primase catalytic core, N-terminal domain	DNAG_N
UHGV-0143465_25	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0143465_25	NCBIFam	TIGR01391.1	DNA primase	NA
UHGV-0143465_25	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0143465_25	HAMAP	MF_00974	DNA primase [dnaG]	NA
UHGV-0143465_25	Structural annotation	PF01807, PF08275, PF06048, MF_00974, MF_00016, TIGR01391, NF040949, COG0358, COG5519	NA	NA
UHGV-0143465_30	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0143465_30	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0143465_30	UniRef90	UniRef90_A0A1Q6FY79	HTH cro/C1-type domain-containing protein	NA
UHGV-0143465_30	eggNOG-mapper	1287476.HMPREF1651_10195	Helix-turn-helix XRE-family like proteins	NA
UHGV-0143465_30	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0143465_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143465_30	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0143465_30	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0143465_33	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0143465_33	PHROG	phrog_1	integrase	integration and excision
UHGV-0143465_33	UniRef90	UniRef90_R5UBD3	Site-specific recombinase XerD	NA
UHGV-0143465_33	eggNOG-mapper	709991.Odosp_R0002	Belongs to the 'phage' integrase family	NA
UHGV-0143465_33	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0143465_33	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0143465_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0143465_33	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0143465_33	Structural annotation	PF00589, PF13102, PF17293, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0143465_34	UniRef90	UniRef90_UPI0013CE57A0	DEAD/DEAH box helicase family protein	NA
UHGV-0143465_34	eggNOG-mapper	679935.Alfi_2109	NA	NA
UHGV-0143465_34	COG	COG0513	Superfamily II DNA and RNA helicase	NA
UHGV-0143465_34	Structural annotation	PF00270, MF_01494, TIGR01389, COG0514	NA	NA
UHGV-0143465_35	KOfam	K15255	PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]	NA
UHGV-0143465_35	PHROG	phrog_325	Dda-like helicase	DNA, RNA and nucleotide metabolism
UHGV-0143465_35	UniRef90	UniRef90_A0A6G7X5L7	AAA family ATPase	NA
UHGV-0143465_35	eggNOG-mapper	1189619.pgond44_07175	ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member	NA
UHGV-0143465_35	PADLOC	cluster10	RecD_0_IVD	CRISPR-CAS
UHGV-0143465_35	Pfam	PF05970	PIF1-like helicase	PIF1
UHGV-0143465_35	Pfam	PF01443	Viral (Superfamily 1) RNA helicase	Viral_helicase1
UHGV-0143465_35	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0143465_37	UniRef90	UniRef90_F0H481	Conserved domain protein	NA
UHGV-0143465_37	eggNOG-mapper	657309.BXY_09730	NA	NA
UHGV-0143465_37	Pfam	PF00515	Tetratricopeptide repeat	TPR_1
UHGV-0143465_41	eggNOG-mapper	679935.Alfi_2216	NA	NA
UHGV-0143465_42	PHROG	phrog_1366	NA	unknown function
UHGV-0143465_42	UniRef90	UniRef90_A0A6S6MC13	AAA domain-containing protein	NA
UHGV-0143465_42	eggNOG-mapper	679935.Alfi_2217	AAA domain	NA
UHGV-0143465_42	Pfam	PF13479	AAA domain	AAA_24
UHGV-0143465_42	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0143465_43	eggNOG-mapper	679935.Alfi_2218	NA	NA