UHGV-0143494

Genome information

Genome length 20,469 bps

CDS count 28

Completeness 60.14% (medium-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143494
vOTU ID	vOTU-030218
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_415051
BioSample	SAMN05414918
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.14% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.93
Jumbo phage	No

Genome content
Genome length	20,469 bps
GC content	41.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	94.32%
Average CDS length	693.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143494_1	eggNOG-mapper	610130.Closa_1386	NA	NA
UHGV-0143494_1	Structural annotation	PF15968	NA	NA
UHGV-0143494_2	PHROG	phrog_2412	NA	unknown function
UHGV-0143494_2	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-0143494_2	eggNOG-mapper	742765.HMPREF9457_02118	NA	NA
UHGV-0143494_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0143494_3	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0143494_3	UniRef90	UniRef90_A0A3R6UPU9	PBSX family phage terminase large subunit	NA
UHGV-0143494_3	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-0143494_3	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0143494_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0143494_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0143494_3	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0143494_4	PHROG	phrog_533	portal protein	head and packaging
UHGV-0143494_4	UniRef90	UniRef90_A0A374BVV6	Phage portal protein	NA
UHGV-0143494_4	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0143494_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0143494_4	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0143494_5	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0143494_5	UniRef90	UniRef90_UPI000C7906A1	phage minor capsid protein	NA
UHGV-0143494_5	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0143494_5	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0143494_5	COG	COG2369	NA	NA
UHGV-0143494_5	Structural annotation	PF06152	NA	NA
UHGV-0143494_6	PHROG	phrog_34144	NA	unknown function
UHGV-0143494_6	eggNOG-mapper	936596.HMPREF1495_0343	NA	NA
UHGV-0143494_6	Structural annotation	PF20111	NA	NA
UHGV-0143494_7	PHROG	phrog_1048	NA	unknown function
UHGV-0143494_7	UniRef90	UniRef90_A0A417PRP3	NA	NA
UHGV-0143494_7	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0143494_7	Pfam	PF11195	NA	DUF2829
UHGV-0143494_7	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0143494_7	Structural annotation	PF11195	NA	NA
UHGV-0143494_8	PHROG	phrog_13199	NA	unknown function
UHGV-0143494_8	eggNOG-mapper	476272.RUMHYD_02851	NA	NA
UHGV-0143494_9	KOfam	K07584	NA	NA
UHGV-0143494_9	PHROG	phrog_4478	peptidase	other
UHGV-0143494_9	UniRef90	UniRef90_A0A3E4ME95	Ribosomal-processing cysteine protease Prp	NA
UHGV-0143494_9	eggNOG-mapper	476272.RUMHYD_02852	Cysteine protease Prp	NA
UHGV-0143494_9	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0143494_9	COG	COG2868	NA	NA
UHGV-0143494_9	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0143494_10	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0143494_11	PHROG	phrog_267	major head protein	head and packaging
UHGV-0143494_11	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0143494_11	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0143494_11	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0143494_11	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0143494_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0143494_12	UniRef90	UniRef90_R5RS10	Protein gp8	NA
UHGV-0143494_12	eggNOG-mapper	935836.JAEL01000086_gene50	NA	NA
UHGV-0143494_13	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0143494_13	UniRef90	UniRef90_UPI001DCE9966	minor capsid protein	NA
UHGV-0143494_13	eggNOG-mapper	1449343.JQLQ01000002_gene1330	Minor capsid protein	NA
UHGV-0143494_13	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0143494_13	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0143494_13	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0143494_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0143494_14	UniRef90	UniRef90_UPI00082D57A1	minor capsid protein	NA
UHGV-0143494_14	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0143494_14	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0143494_15	UniRef90	UniRef90_UPI001D058B7D	minor capsid protein	NA
UHGV-0143494_15	Structural annotation	PF12691	NA	NA
UHGV-0143494_16	PHROG	phrog_820	major tail protein	tail
UHGV-0143494_16	UniRef90	UniRef90_A0A3R6YSE8	Capsid protein	NA
UHGV-0143494_16	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0143494_16	COG	COG5492	NA	NA
UHGV-0143494_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0143494_17	Structural annotation	PF10666	NA	NA
UHGV-0143494_18	PHROG	phrog_706	NA	unknown function
UHGV-0143494_18	UniRef90	UniRef90_UPI0008360889	Gp15 family bacteriophage protein	NA
UHGV-0143494_18	eggNOG-mapper	428125.CLOLEP_00176	Bacteriophage Gp15 protein	NA
UHGV-0143494_18	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0143494_18	Structural annotation	PF06854	NA	NA
UHGV-0143494_19	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0143494_19	UniRef90	UniRef90_A0A845KIZ9	PhageMin_Tail domain-containing protein	NA
UHGV-0143494_19	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-0143494_19	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0143494_19	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0143494_19	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0143494_20	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0143494_20	eggNOG-mapper	411468.CLOSCI_02410	NA	NA
UHGV-0143494_20	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0143494_21	PHROG	phrog_538	minor tail protein	tail
UHGV-0143494_21	UniRef90	UniRef90_UPI001D071BA3	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0143494_21	eggNOG-mapper	658655.HMPREF0988_02550	NA	NA
UHGV-0143494_21	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0143494_21	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0143494_22	PHROG	phrog_9994	NA	unknown function
UHGV-0143494_22	UniRef90	UniRef90_A0A845KHH7	H_lectin domain-containing protein	NA
UHGV-0143494_22	eggNOG-mapper	1256908.HMPREF0373_00465	NA	NA
UHGV-0143494_22	Structural annotation	PF20747, NF012201	NA	NA
UHGV-0143494_23	eggNOG-mapper	86416.Clopa_2238	NA	NA
UHGV-0143494_24	PHROG	phrog_199	holin	lysis
UHGV-0143494_24	UniRef90	UniRef90_B0G4J9	Toxin secretion/phage lysis holin	NA
UHGV-0143494_24	eggNOG-mapper	411461.DORFOR_01186	Bacteriophage holin family	NA
UHGV-0143494_24	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0143494_24	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0143494_24	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0143494_24	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0143494_26	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0143494_26	PHROG	phrog_435	endolysin	lysis
UHGV-0143494_26	UniRef90	UniRef90_A0A374AI56	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0143494_26	eggNOG-mapper	411461.DORFOR_01187	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0143494_26	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0143494_26	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0143494_26	Structural annotation	PF01520, TIGR02883, COG0860, COG5263	NA	NA
UHGV-0143494_27	KOfam	K02051	ABC.SN.S; NitT/TauT family transport system substrate-binding protein	NA
UHGV-0143494_27	UniRef90	UniRef90_UPI001570A6DA	ABC transporter substrate-binding protein	NA
UHGV-0143494_27	eggNOG-mapper	411462.DORLON_01446	COG COG0715 ABC-type nitrate sulfonate bicarbonate transport systems, periplasmic components	NA
UHGV-0143494_27	Pfam	PF09084	NMT1/THI5 like	NMT1
UHGV-0143494_27	COG	COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	NA
UHGV-0143494_28	PHROG	phrog_25642	NA	unknown function
UHGV-0143494_28	UniRef90	UniRef90_A0A6L8RZT9	TetR/AcrR family transcriptional regulator	NA
UHGV-0143494_28	eggNOG-mapper	471875.RUMLAC_02592	tetR family	NA
UHGV-0143494_28	COG	COG1309	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	NA