UHGV-0143512

Genome information

Genome length 46,376 bps

CDS count 75

Completeness 87.01% (medium-quality)

geNomad score 0.9746

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143512
vOTU ID	vOTU-027167
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_440394
BioSample	SAMN05971475
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.01% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9746
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.88
Jumbo phage	No

Genome content
Genome length	46,376 bps
GC content	39.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	86.75%
Average CDS length	539.52 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143512_1	eggNOG-mapper	411461.DORFOR_01518	NA	NA
UHGV-0143512_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0143512_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0143512_2	UniRef90	UniRef90_UPI00131A09CC	recombinase family protein	NA
UHGV-0143512_2	eggNOG-mapper	411468.CLOSCI_00582	Recombinase	NA
UHGV-0143512_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0143512_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0143512_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0143512_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0143512_2	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0143512_3	PHROG	phrog_5319	outer membrane protein	other
UHGV-0143512_3	UniRef90	UniRef90_UPI001DA185D1	zinc ribbon domain-containing protein	NA
UHGV-0143512_3	eggNOG-mapper	471855.Shel_11450	sh3 domain protein	NA
UHGV-0143512_3	COG	COG3103	NA	NA
UHGV-0143512_3	Structural annotation	PF03843, PF12773, MF_00984, TIGR00752, COG3065	NA	NA
UHGV-0143512_4	PHROG	phrog_87	metallo-protease	other
UHGV-0143512_4	UniRef90	UniRef90_UPI001D0DE977	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0143512_4	eggNOG-mapper	411461.DORFOR_00033	IrrE N-terminal-like domain	NA
UHGV-0143512_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0143512_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0143512_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0143512_5	UniRef90	UniRef90_UPI00164A12C2	helix-turn-helix transcriptional regulator	NA
UHGV-0143512_5	eggNOG-mapper	1411095.X5JA02_9CAUD	protein disulfide oxidoreductase activity	NA
UHGV-0143512_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0143512_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143512_6	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0143512_6	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0143512_6	UniRef90	UniRef90_UPI000C1B3D09	helix-turn-helix transcriptional regulator	NA
UHGV-0143512_6	eggNOG-mapper	997350.HMPREF9129_1690	Helix-turn-helix XRE-family like proteins	NA
UHGV-0143512_6	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0143512_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143512_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0143512_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0143512_7	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0143512_8	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0143512_8	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-0143512_8	UniRef90	UniRef90_UPI000CF85B06	antA/AntB antirepressor family protein	NA
UHGV-0143512_8	eggNOG-mapper	397290.C810_01343	AntA/AntB antirepressor	NA
UHGV-0143512_8	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0143512_8	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0143512_8	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-0143512_13	PHROG	phrog_32342	NA	unknown function
UHGV-0143512_14	PHROG	phrog_4292	NA	unknown function
UHGV-0143512_15	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0143512_15	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0143512_15	UniRef90	UniRef90_UPI001319D695	AAA family ATPase	NA
UHGV-0143512_15	eggNOG-mapper	290402.Cbei_1619	nuclear chromosome segregation	NA
UHGV-0143512_15	Pfam	PF13476	AAA domain	AAA_23
UHGV-0143512_15	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0143512_15	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0143512_18	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0143512_18	UniRef90	UniRef90_A0A173SDT4	RecT family	NA
UHGV-0143512_18	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-0143512_18	Pfam	PF03837	RecT family	RecT
UHGV-0143512_18	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0143512_19	KOfam	K06940	NA	NA
UHGV-0143512_19	PHROG	phrog_32498	NA	unknown function
UHGV-0143512_19	UniRef90	UniRef90_UPI000CF93B43	YkgJ family cysteine cluster protein	NA
UHGV-0143512_19	eggNOG-mapper	243232.MJ_0661	Putative zinc- or iron-chelating domain	NA
UHGV-0143512_19	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0143512_19	COG	COG0727	NA	NA
UHGV-0143512_20	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0143512_20	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0143512_20	UniRef90	UniRef90_UPI000CFA6A82	MBL fold metallo-hydrolase	NA
UHGV-0143512_20	eggNOG-mapper	658655.HMPREF0988_00882	Metallo-beta-lactamase superfamily	NA
UHGV-0143512_20	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0143512_20	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0143512_20	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0143512_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0143512_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0143512_21	UniRef90	UniRef90_UPI000CF9318B	single-stranded DNA-binding protein	NA
UHGV-0143512_21	eggNOG-mapper	742723.HMPREF9477_01387	Single-strand binding protein family	NA
UHGV-0143512_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0143512_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0143512_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0143512_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0143512_21	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0143512_22	PHROG	phrog_15198	NA	unknown function
UHGV-0143512_22	UniRef90	UniRef90_A0A414QEQ4	NA	NA
UHGV-0143512_22	eggNOG-mapper	411461.DORFOR_01155	NA	NA
UHGV-0143512_22	Pfam	PF04448	NA	DUF551
UHGV-0143512_23	UniRef90	UniRef90_A0A1C5RYU8	Restriction alleviation protein, Lar family	NA
UHGV-0143512_23	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0143512_23	COG	COG1405	Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB	NA
UHGV-0143512_23	Structural annotation	NF007260	NA	NA
UHGV-0143512_24	UniRef90	UniRef90_UPI000CF8F0F1	NA	NA
UHGV-0143512_24	eggNOG-mapper	97139.C824_02654	NA	NA
UHGV-0143512_24	Pfam	PF07866	NA	DUF1653
UHGV-0143512_24	COG	COG4728	NA	NA
UHGV-0143512_24	Structural annotation	PF07866, COG4728	NA	NA
UHGV-0143512_27	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0143512_27	PHROG	phrog_1	integrase	integration and excision
UHGV-0143512_27	UniRef90	UniRef90_UPI000CF89537	tyrosine-type recombinase/integrase	NA
UHGV-0143512_27	eggNOG-mapper	610130.Closa_0719	Belongs to the 'phage' integrase family	NA
UHGV-0143512_27	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0143512_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0143512_27	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0143512_27	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0143512_28	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0143512_28	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0143512_28	UniRef90	UniRef90_UPI001897DB88	phage antirepressor KilAC domain-containing protein	NA
UHGV-0143512_28	eggNOG-mapper	33035.JPJF01000057_gene3118	BRO family, N-terminal domain	NA
UHGV-0143512_28	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0143512_28	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0143512_28	COG	COG3617	Prophage antirepressor	NA
UHGV-0143512_28	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0143512_29	UniRef90	UniRef90_A0A3A9HXZ9	CopG family transcriptional regulator	NA
UHGV-0143512_29	eggNOG-mapper	1235800.C819_00492	NA	NA
UHGV-0143512_29	Pfam	PF12651	Ribbon-helix-helix domain	RHH_3
UHGV-0143512_29	Structural annotation	PF01402, NF041793, COG4453	NA	NA
UHGV-0143512_31	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0143512_31	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0143512_31	UniRef90	UniRef90_UPI00156F56E8	ORF6C domain-containing protein	NA
UHGV-0143512_31	eggNOG-mapper	658655.HMPREF0988_02543	Phage regulatory protein	NA
UHGV-0143512_31	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0143512_31	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0143512_31	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0143512_31	Structural annotation	PF10552, PF08346, NF008573, COG3561	NA	NA
UHGV-0143512_33	eggNOG-mapper	658659.HMPREF0983_00103	NA	NA
UHGV-0143512_33	Structural annotation	PF18847, NF002761, COG1847	NA	NA
UHGV-0143512_36	UniRef90	UniRef90_R0C2X0	HTH cro/C1-type domain-containing protein	NA
UHGV-0143512_36	eggNOG-mapper	411490.ANACAC_00697	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0143512_36	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0143512_36	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0143512_37	eggNOG-mapper	1235802.C823_02864	NA	NA
UHGV-0143512_38	UniRef90	UniRef90_A0A396QA75	NA	NA
UHGV-0143512_38	eggNOG-mapper	1235799.C818_04187	NA	NA
UHGV-0143512_38	Pfam	PF14076	NA	DUF4258
UHGV-0143512_38	Structural annotation	PF14076, TIGR02683, COG2929	NA	NA
UHGV-0143512_39	PHROG	phrog_29304	NA	unknown function
UHGV-0143512_39	UniRef90	UniRef90_A0A396PRX7	Type II toxin-antitoxin system MqsA family antitoxin	NA
UHGV-0143512_39	eggNOG-mapper	638302.HMPREF0908_0398	NA	NA
UHGV-0143512_39	NCBIFam	TIGR03831.1	YgiT-type zinc finger protein	NA
UHGV-0143512_39	Structural annotation	PF14122, TIGR03829	NA	NA
UHGV-0143512_40	eggNOG-mapper	476272.RUMHYD_01907	NA	NA
UHGV-0143512_41	Structural annotation	PF06004, NF033216, COG4568	NA	NA
UHGV-0143512_44	PHROG	phrog_1233	NA	unknown function
UHGV-0143512_44	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0143512_44	eggNOG-mapper	1415774.U728_832	NA	NA
UHGV-0143512_47	Structural annotation	PF13069	NA	NA
UHGV-0143512_48	PHROG	phrog_1048	NA	unknown function
UHGV-0143512_48	UniRef90	UniRef90_A0A415D571	NA	NA
UHGV-0143512_48	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0143512_48	Pfam	PF11195	NA	DUF2829
UHGV-0143512_48	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0143512_48	Structural annotation	PF11195	NA	NA
UHGV-0143512_50	PHROG	phrog_6730	NA	unknown function
UHGV-0143512_50	eggNOG-mapper	329381.D9ICN7_9CAUD	NA	NA
UHGV-0143512_50	Structural annotation	PF00684	NA	NA
UHGV-0143512_51	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0143512_51	UniRef90	UniRef90_A0A396KGT7	NA	NA
UHGV-0143512_51	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0143512_51	Pfam	PF14359	NA	DUF4406
UHGV-0143512_51	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0143512_52	PHROG	phrog_918	NA	unknown function
UHGV-0143512_52	UniRef90	UniRef90_UPI0018A88BA9	NA	NA
UHGV-0143512_52	eggNOG-mapper	1256908.HMPREF0373_00480	NA	NA
UHGV-0143512_52	Pfam	PF19791	NA	DUF6275
UHGV-0143512_52	Structural annotation	PF19791	NA	NA
UHGV-0143512_54	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0143512_54	UniRef90	UniRef90_A0A373MXM0	Phage capsid protein	NA
UHGV-0143512_54	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0143512_54	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0143512_54	COG	COG2369	NA	NA
UHGV-0143512_54	Structural annotation	PF06152	NA	NA
UHGV-0143512_55	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0143512_55	eggNOG-mapper	397290.C810_05223	Phage minor structural protein GP20	NA
UHGV-0143512_55	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0143512_55	Structural annotation	PF06810	NA	NA
UHGV-0143512_56	UniRef90	UniRef90_A0A0M2NI16	S-l_SbsC_C domain-containing protein	NA
UHGV-0143512_56	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0143512_58	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0143512_58	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0143512_60	PHROG	phrog_3366	NA	unknown function
UHGV-0143512_60	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0143512_60	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0143512_61	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0143512_61	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0143512_61	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0143512_61	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0143512_61	Structural annotation	PF11114	NA	NA
UHGV-0143512_62	PHROG	phrog_3266	tail completion	connector
UHGV-0143512_62	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0143512_62	Structural annotation	PF12691	NA	NA
UHGV-0143512_63	PHROG	phrog_3099	NA	unknown function
UHGV-0143512_63	eggNOG-mapper	476272.RUMHYD_01782	NA	NA
UHGV-0143512_63	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0143512_64	PHROG	phrog_11299	NA	unknown function
UHGV-0143512_64	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0143512_64	Structural annotation	PF10666	NA	NA
UHGV-0143512_65	PHROG	phrog_706	NA	unknown function
UHGV-0143512_65	UniRef90	UniRef90_UPI00156F9D1C	Gp15 family bacteriophage protein	NA
UHGV-0143512_65	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0143512_65	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0143512_65	Structural annotation	PF06854	NA	NA
UHGV-0143512_66	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0143512_66	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0143512_66	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0143512_66	COG	COG1511	NA	NA
UHGV-0143512_67	PHROG	phrog_1194	NA	unknown function
UHGV-0143512_67	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0143512_68	PHROG	phrog_6616	tail protein	tail
UHGV-0143512_68	UniRef90	UniRef90_UPI0015714EA8	tail fiber domain-containing protein	NA
UHGV-0143512_68	eggNOG-mapper	357276.EL88_12830	Phage minor structural protein	NA
UHGV-0143512_68	COG	COG4926	Phage-related protein	NA
UHGV-0143512_68	Structural annotation	PF05113, PF01835, PF03921, NF033848, COG3500	NA	NA
UHGV-0143512_69	PHROG	phrog_18444	NA	unknown function
UHGV-0143512_71	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0143512_71	PHROG	phrog_1	integrase	integration and excision
UHGV-0143512_71	UniRef90	UniRef90_A0A373MY08	Integrase	NA
UHGV-0143512_71	eggNOG-mapper	411459.RUMOBE_00920	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0143512_71	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0143512_71	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0143512_71	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0143512_71	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0143512_72	PHROG	phrog_937	hemolysin	other
UHGV-0143512_72	eggNOG-mapper	742740.HMPREF9474_03172	NA	NA
UHGV-0143512_73	PHROG	phrog_1129	holin	lysis
UHGV-0143512_73	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0143512_73	eggNOG-mapper	411460.RUMTOR_01325	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0143512_73	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0143512_73	Structural annotation	PF16079	NA	NA
UHGV-0143512_74	Structural annotation	PF13384, NF001074, COG3677	NA	NA
UHGV-0143512_75	KOfam	K07273	acm; lysozyme	NA
UHGV-0143512_75	PHROG	phrog_291	endolysin	lysis
UHGV-0143512_75	UniRef90	UniRef90_UPI001A9A4D2C	glycoside hydrolase family 25 protein	NA
UHGV-0143512_75	eggNOG-mapper	537007.BLAHAN_04972	Glycosyl hydrolases family 25	NA
UHGV-0143512_75	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0143512_75	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0143512_75	Structural annotation	PF01183, TIGR04041, COG3757	NA	NA