UHGV-0143525

Genome information

Genome length 54,660 bps

CDS count 63

Completeness 73.96% (medium-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143525
vOTU ID	vOTU-014955
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_400082
BioSample	SAMN05194718
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.96% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.1
Jumbo phage	No

Genome content
Genome length	54,660 bps
GC content	60.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	93.28%
Average CDS length	811.19 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143525_1	KOfam	K14059	int; integrase	NA
UHGV-0143525_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0143525_1	UniRef90	UniRef90_A0A416ZBA5	Site-specific integrase	NA
UHGV-0143525_1	eggNOG-mapper	1235797.C816_00779	Phage integrase family	NA
UHGV-0143525_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0143525_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0143525_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0143525_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0143525_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0143525_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0143525_4	UniRef90	UniRef90_R6Q8R6	Repressor LexA	NA
UHGV-0143525_4	eggNOG-mapper	879308.HMPREF9130_0437	Represses a number of genes involved in the response to DNA damage (SOS response)	NA
UHGV-0143525_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0143525_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143525_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0143525_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0143525_4	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0143525_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0143525_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0143525_5	UniRef90	UniRef90_H1CAF9	HTH cro/C1-type domain-containing protein	NA
UHGV-0143525_5	eggNOG-mapper	1111454.HMPREF1250_1029	Helix-turn-helix XRE-family like proteins	NA
UHGV-0143525_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143525_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0143525_8	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0143525_8	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0143525_10	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0143525_10	UniRef90	UniRef90_UPI001A9ACF4A	NA	NA
UHGV-0143525_10	eggNOG-mapper	591001.Acfer_1134	NA	NA
UHGV-0143525_10	Pfam	PF10926	NA	DUF2800
UHGV-0143525_10	COG	COG2887	RecB family exonuclease	NA
UHGV-0143525_10	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0143525_11	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0143525_11	UniRef90	UniRef90_UPI001C1238FC	NA	NA
UHGV-0143525_11	eggNOG-mapper	743719.PaelaDRAFT_2379	NA	NA
UHGV-0143525_11	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0143525_11	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0143525_12	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0143525_12	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0143525_12	UniRef90	UniRef90_N2AYK3	DNA polymerase bacteriophage-type	NA
UHGV-0143525_12	eggNOG-mapper	1235802.C823_01560	DNA polymerase	NA
UHGV-0143525_12	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0143525_12	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0143525_12	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0143525_14	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0143525_14	PHROG	phrog_30550	NA	unknown function
UHGV-0143525_14	UniRef90	UniRef90_A0A6N9PX25	Cell wall hydrolase	NA
UHGV-0143525_14	eggNOG-mapper	1519439.JPJG01000077_gene920	Cell Wall Hydrolase	NA
UHGV-0143525_14	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0143525_14	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0143525_16	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0143525_16	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0143525_16	UniRef90	UniRef90_A0A3G9J1T4	DEAD/DEAH box helicase	NA
UHGV-0143525_16	eggNOG-mapper	1296660.S5MA26_9CAUD	Type III restriction enzyme, res subunit	NA
UHGV-0143525_16	PADLOC	DpdE_00012	DpdE	DPD
UHGV-0143525_16	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0143525_16	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0143525_16	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0143525_17	PHROG	phrog_24386	NA	unknown function
UHGV-0143525_17	eggNOG-mapper	1280694.AUJQ01000013_gene1409	phosphatase activity	NA
UHGV-0143525_17	COG	COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	NA
UHGV-0143525_17	Structural annotation	TIGR01689, COG0241	NA	NA
UHGV-0143525_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0143525_18	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0143525_19	PHROG	phrog_474	phosphofructokinase	other
UHGV-0143525_19	UniRef90	UniRef90_A0A2V2EHL9	NA	NA
UHGV-0143525_19	eggNOG-mapper	1203606.HMPREF1526_00237	NA	NA
UHGV-0143525_19	Pfam	PF19905	NA	DUF6378
UHGV-0143525_20	UniRef90	UniRef90_UPI001A9B9FB4	FAD-dependent thymidylate synthase	NA
UHGV-0143525_20	eggNOG-mapper	1410632.JHWW01000006_gene695	NA	NA
UHGV-0143525_20	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0143525_23	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0143525_23	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0143525_23	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0143525_23	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0143525_23	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0143525_23	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0143525_23	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0143525_23	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0143525_30	PHROG	phrog_3392	NA	unknown function
UHGV-0143525_30	UniRef90	UniRef90_R7NB62	Putative phage protein	NA
UHGV-0143525_30	eggNOG-mapper	1217710.F969_00044	NA	NA
UHGV-0143525_36	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0143525_36	UniRef90	UniRef90_UPI001D06E26F	virulence-associated E family protein	NA
UHGV-0143525_36	eggNOG-mapper	1123250.KB908413_gene334	Virulence-associated protein E	NA
UHGV-0143525_36	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0143525_36	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0143525_36	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0143525_37	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0143525_37	UniRef90	UniRef90_A0A1Y4MPX2	VRR-NUC domain-containing protein	NA
UHGV-0143525_37	eggNOG-mapper	697281.Mahau_2836	VRR_NUC	NA
UHGV-0143525_37	Structural annotation	PF01974, MF_01490, NF011269	NA	NA
UHGV-0143525_38	UniRef90	UniRef90_A0A662S5F4	Glutamine amidotransferase type-2 domain-containing protein	NA
UHGV-0143525_38	eggNOG-mapper	1306174.JODP01000006_gene2948	NA	NA
UHGV-0143525_38	Structural annotation	PF13230, MF_01931, TIGR01134, COG0121	NA	NA
UHGV-0143525_42	PHROG	phrog_16683	NA	unknown function
UHGV-0143525_42	UniRef90	UniRef90_A0A3C0QQ13	Zinc-binding protein	NA
UHGV-0143525_42	eggNOG-mapper	246199.CUS_4789	NA	NA
UHGV-0143525_42	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-0143525_42	Structural annotation	PF12224, MF_01609, NF010042, COG2170	NA	NA
UHGV-0143525_44	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0143525_44	UniRef90	UniRef90_A0A845QMQ7	Terminase	NA
UHGV-0143525_44	eggNOG-mapper	755731.Clo1100_2438	TIGRFAM Phage	NA
UHGV-0143525_44	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0143525_44	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0143525_44	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0143525_44	COG	COG5362	Phage terminase large subunit	NA
UHGV-0143525_44	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0143525_46	PHROG	phrog_156	portal protein	head and packaging
UHGV-0143525_46	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0143525_46	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0143525_48	PHROG	phrog_422	major head protein	head and packaging
UHGV-0143525_48	UniRef90	UniRef90_A0A5D4RB37	N4-gp56 family major capsid protein	NA
UHGV-0143525_48	eggNOG-mapper	755731.Clo1100_2434	NA	NA
UHGV-0143525_48	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0143525_49	PHROG	phrog_13046	NA	unknown function
UHGV-0143525_49	Structural annotation	PF20387	NA	NA
UHGV-0143525_50	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0143525_50	eggNOG-mapper	693746.OBV_23870	NA	NA
UHGV-0143525_50	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0143525_51	PHROG	phrog_28766	tail fiber protein	tail
UHGV-0143525_51	eggNOG-mapper	1408437.JNJN01000087_gene969	NA	NA
UHGV-0143525_51	Structural annotation	PF04582	NA	NA
UHGV-0143525_52	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0143525_54	PHROG	phrog_38190	NA	unknown function
UHGV-0143525_54	eggNOG-mapper	411473.RUMCAL_00420	nuclear chromosome segregation	NA
UHGV-0143525_54	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0143525_56	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0143525_56	PHROG	phrog_8745	tail fiber protein	tail
UHGV-0143525_56	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0143525_57	KOfam	K01104	E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]	NA
UHGV-0143525_57	UniRef90	UniRef90_UPI001BF10870	Tyrosine-protein phosphatase	NA
UHGV-0143525_57	eggNOG-mapper	610130.Closa_0587	Tyrosine phosphatase family	NA
UHGV-0143525_57	Pfam	PF13350	Tyrosine phosphatase family	Y_phosphatase3
UHGV-0143525_57	COG	COG2365	Protein tyrosine/serine phosphatase Oca4	NA
UHGV-0143525_57	Structural annotation	PF13350, TIGR01244, COG2365	NA	NA
UHGV-0143525_58	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0143525_58	PHROG	phrog_9611	endolysin	lysis
UHGV-0143525_58	UniRef90	UniRef90_A0A3D1VCL7	N-acetylmuramoyl-L-alanine amidase domain-containing protein (Fragment)	NA
UHGV-0143525_58	eggNOG-mapper	97138.C820_00738	Ami_2	NA
UHGV-0143525_58	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0143525_58	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0143525_58	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0143525_59	PHROG	phrog_10091	holin	lysis
UHGV-0143525_59	UniRef90	UniRef90_R5MCL9	Holin phage phi LC3 family	NA
UHGV-0143525_59	eggNOG-mapper	445975.COLSTE_02144	Bacteriophage holin	NA
UHGV-0143525_59	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0143525_59	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0143525_59	COG	COG5546	NA	NA
UHGV-0143525_59	Structural annotation	COG5546	NA	NA
UHGV-0143525_62	eggNOG-mapper	693746.OBV_23800	NA	NA
UHGV-0143525_62	Pfam	PF06414	Zeta toxin	Zeta_toxin
UHGV-0143525_62	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0143525_63	eggNOG-mapper	1408323.JQKK01000006_gene582	Sulfite exporter TauE/SafE	NA
UHGV-0143525_63	COG	COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	NA