UHGV-0143572

Genome information

Genome length 32,482 bps

CDS count 49

Completeness 89.81% (medium-quality)

geNomad score 0.9657

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143572
vOTU ID	vOTU-030151
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_418923
BioSample	SAMN05826756
Country	Russia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.81% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	31
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9657
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.2
Jumbo phage	No

Genome content
Genome length	32,482 bps
GC content	49.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	87.10%
Average CDS length	580.53 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143572_1	UniRef90	UniRef90_B5XVV5	Conserved domain protein	NA
UHGV-0143572_1	eggNOG-mapper	573.JG24_18150	NA	NA
UHGV-0143572_2	UniRef90	UniRef90_A0A087FQD6	Cupin fold metalloprotein, WbuC family	NA
UHGV-0143572_2	eggNOG-mapper	573.JG24_18145	Cupin 2, conserved barrel domain protein	NA
UHGV-0143572_2	Pfam	PF19480	NA	DUF6016
UHGV-0143572_2	NCBIFam	TIGR04366.1	WbuC family cupin fold metalloprotein	NA
UHGV-0143572_2	COG	COG0662	Mannose-6-phosphate isomerase, cupin superfamily	NA
UHGV-0143572_3	KOfam	K14059	int; integrase	NA
UHGV-0143572_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0143572_3	UniRef90	UniRef90_A0A2Z2FBU9	Integrase	NA
UHGV-0143572_3	eggNOG-mapper	640513.Entas_3109	Belongs to the 'phage' integrase family	NA
UHGV-0143572_3	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0143572_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0143572_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0143572_3	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG4974	NA	NA
UHGV-0143572_4	PHROG	phrog_1762	NA	unknown function
UHGV-0143572_4	UniRef90	UniRef90_A0A8B0URR6	NA	NA
UHGV-0143572_4	eggNOG-mapper	1123487.KB892835_gene3681	NA	NA
UHGV-0143572_4	Pfam	PF11185	NA	DUF2971
UHGV-0143572_5	UniRef90	UniRef90_A0A212I3I1	50s ribosomal protein l7 l12	NA
UHGV-0143572_5	eggNOG-mapper	866553.G3CFG7_9CAUD	NA	NA
UHGV-0143572_6	PHROG	phrog_28084	NA	unknown function
UHGV-0143572_6	UniRef90	UniRef90_A0A486ULJ8	Eaa1	NA
UHGV-0143572_6	eggNOG-mapper	1224318.DT73_00280	NA	NA
UHGV-0143572_6	Pfam	PF04447	dATP/dGTP pyrophosphohydrolase	dATP-dGTP_PPHyd
UHGV-0143572_6	Structural annotation	PF04447	NA	NA
UHGV-0143572_8	PHROG	phrog_11067	NA	unknown function
UHGV-0143572_8	eggNOG-mapper	35703.DQ02_13705	NA	NA
UHGV-0143572_9	UniRef90	UniRef90_A0A422ZBQ3	Integrase	NA
UHGV-0143572_10	Structural annotation	PF14354, TIGR04203	NA	NA
UHGV-0143572_11	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0143572_11	PHROG	phrog_1033	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0143572_11	UniRef90	UniRef90_A0A7Z7SCW6	DNA-binding plasmid partitioning protein	NA
UHGV-0143572_11	eggNOG-mapper	640513.Entas_3103	DNA binding	NA
UHGV-0143572_11	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0143572_11	Structural annotation	PF02195, PF08535, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0143572_12	PHROG	phrog_210	NA	unknown function
UHGV-0143572_12	UniRef90	UniRef90_A0A8F4G268	YfdQ family protein	NA
UHGV-0143572_12	eggNOG-mapper	640513.Entas_3102	NA	NA
UHGV-0143572_12	Pfam	PF10065	NA	DUF2303
UHGV-0143572_12	COG	COG5532	NA	NA
UHGV-0143572_12	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0143572_13	PHROG	phrog_204	NA	unknown function
UHGV-0143572_13	eggNOG-mapper	640513.Entas_3101	NA	NA
UHGV-0143572_14	UniRef90	UniRef90_UPI00138CB8AC	NA	NA
UHGV-0143572_15	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0143572_15	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0143572_15	UniRef90	UniRef90_A0A366FB10	Phage repressor protein	NA
UHGV-0143572_15	eggNOG-mapper	35703.DQ02_24125	Peptidase S24-like	NA
UHGV-0143572_15	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0143572_15	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0143572_15	Structural annotation	PF00717, PF12844, MF_00015, NF007621, TIGR02607, COG2932	NA	NA
UHGV-0143572_16	PHROG	phrog_35	transcriptional repressor	transcription regulation
UHGV-0143572_16	UniRef90	UniRef90_A0A422ZBQ8	Transcriptional regulator	NA
UHGV-0143572_16	eggNOG-mapper	35703.DQ02_24130	Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA
UHGV-0143572_16	COG	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	NA
UHGV-0143572_16	Structural annotation	PF15943, NF041951, COG4197	NA	NA
UHGV-0143572_17	PHROG	phrog_101	CII-like transcriptional activator	transcription regulation
UHGV-0143572_17	UniRef90	UniRef90_A0A2J4VAR6	DNA-binding protein (Fragment)	NA
UHGV-0143572_17	eggNOG-mapper	637910.ROD_26201	NA	NA
UHGV-0143572_17	Pfam	PF06892	Phage regulatory protein CII (CP76)	Phage_CP76
UHGV-0143572_17	NCBIFam	NF041471.1	YmfL family putative regulatory protein	NA
UHGV-0143572_18	PHROG	phrog_852	NA	unknown function
UHGV-0143572_18	eggNOG-mapper	640513.Entas_3096	NA	NA
UHGV-0143572_19	PHROG	phrog_1492	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0143572_19	UniRef90	UniRef90_A0A2I8S9F0	NUMOD4 domain-containing protein	NA
UHGV-0143572_19	eggNOG-mapper	1224136.AMFN01000003_gene3640	HNH endonuclease	NA
UHGV-0143572_19	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0143572_20	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0143572_20	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0143572_20	UniRef90	UniRef90_A0A7W3CZQ5	DEAD/DEAH box helicase	NA
UHGV-0143572_20	eggNOG-mapper	640513.Entas_3094	helicase	NA
UHGV-0143572_20	PADLOC	PbeA_00005	PbeA	PBE
UHGV-0143572_20	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0143572_20	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0143572_20	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0143572_20	Structural annotation	PF07652, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0143572_21	PHROG	phrog_510	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0143572_21	UniRef90	UniRef90_A0A212I3G5	Prim_Zn_Ribbon domain-containing protein	NA
UHGV-0143572_21	eggNOG-mapper	640513.Entas_3093	Zinc-binding domain of primase-helicase	NA
UHGV-0143572_21	Pfam	PF08273	Zinc-binding domain of primase-helicase	Prim_Zn_Ribbon
UHGV-0143572_21	Pfam	PF13362	Toprim domain	Toprim_3
UHGV-0143572_21	COG	COG4643	NA	NA
UHGV-0143572_21	Structural annotation	PF13362, PF01807, MF_00974, TIGR01391, COG4643	NA	NA
UHGV-0143572_22	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0143572_22	UniRef90	UniRef90_A0A7Z7SEX8	Bacteriophage Lambda NinG protein	NA
UHGV-0143572_22	eggNOG-mapper	640513.Entas_3092	endonuclease activity	NA
UHGV-0143572_22	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0143572_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0143572_22	Structural annotation	PF05766	NA	NA
UHGV-0143572_23	PHROG	phrog_3496	NA	unknown function
UHGV-0143572_24	KOfam	K24174	METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]	NA
UHGV-0143572_24	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0143572_24	UniRef90	UniRef90_A0A377Y574	MT-A70 family protein	NA
UHGV-0143572_24	eggNOG-mapper	640513.Entas_3091	Belongs to the MT-A70-like family	NA
UHGV-0143572_24	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0143572_24	Pfam	PF05063	MT-A70	MT-A70
UHGV-0143572_24	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0143572_24	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0143572_25	PHROG	phrog_753	anti-termination protein Q-like	transcription regulation
UHGV-0143572_25	UniRef90	UniRef90_A0A0J2GSI8	NA	NA
UHGV-0143572_25	eggNOG-mapper	90371.CY43_13955	NA	NA
UHGV-0143572_25	Pfam	PF06576	NA	DUF1133
UHGV-0143572_25	Structural annotation	PF06576	NA	NA
UHGV-0143572_27	PHROG	phrog_198	holin	lysis
UHGV-0143572_27	UniRef90	UniRef90_A0A0J2A5L5	Membrane protein	NA
UHGV-0143572_27	eggNOG-mapper	754331.AEME01000001_gene4288	Putative phage holin	NA
UHGV-0143572_27	Pfam	PF16931	Putative phage holin	Phage_holin_8
UHGV-0143572_27	Structural annotation	PF16931	NA	NA
UHGV-0143572_28	PHROG	phrog_217	holin	lysis
UHGV-0143572_28	UniRef90	UniRef90_A0A2L0KQV5	Membrane protein	NA
UHGV-0143572_28	eggNOG-mapper	469595.CSAG_00950	Putative 3TM holin, Phage_holin_3	NA
UHGV-0143572_28	Pfam	PF05449	Putative 3TM holin, Phage_holin_3	Phage_holin_3_7
UHGV-0143572_29	KOfam	K03791	K03791; putative chitinase	NA
UHGV-0143572_29	PHROG	phrog_181	endolysin	lysis
UHGV-0143572_29	UniRef90	UniRef90_W1EF20	Phage endolysin	NA
UHGV-0143572_29	eggNOG-mapper	592316.Pat9b_2138	Chitinase class I	NA
UHGV-0143572_29	Pfam	PF00182	Chitinase class I	Glyco_hydro_19
UHGV-0143572_29	COG	COG3179	Chitinase, GH19 family	NA
UHGV-0143572_29	Structural annotation	PF00182, TIGR02282, COG3179	NA	NA
UHGV-0143572_30	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-0143572_30	eggNOG-mapper	571.MC52_01455	NA	NA
UHGV-0143572_31	KOfam	K09161	NA	NA
UHGV-0143572_31	PHROG	phrog_6084	NA	unknown function
UHGV-0143572_31	UniRef90	UniRef90_UPI000E2AA7F0	YfbU family protein	NA
UHGV-0143572_31	eggNOG-mapper	202955.BBND01000048_gene1895	YfbU domain	NA
UHGV-0143572_31	Pfam	PF03887	YfbU domain	YfbU
UHGV-0143572_31	COG	COG3013	NA	NA
UHGV-0143572_31	Structural annotation	PF03887, MF_00762, NF003936, COG3013	NA	NA
UHGV-0143572_32	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0143572_32	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0143572_32	UniRef90	UniRef90_UPI0013D28F07	HNH endonuclease	NA
UHGV-0143572_32	eggNOG-mapper	640513.Entas_3084	HNH endonuclease	NA
UHGV-0143572_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0143572_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0143572_32	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0143572_33	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0143572_33	UniRef90	UniRef90_A0A377ZT15	Terminase	NA
UHGV-0143572_33	eggNOG-mapper	1410619.SRDD_27410	Phage terminase, small subunit	NA
UHGV-0143572_33	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0143572_33	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0143572_33	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0143572_33	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0143572_34	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0143572_34	UniRef90	UniRef90_A0A3G2FCW0	Terminase large subunit	NA
UHGV-0143572_34	eggNOG-mapper	741091.Rahaq_1806	terminase	NA
UHGV-0143572_34	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0143572_34	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0143572_34	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0143572_34	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0143572_35	PHROG	phrog_7105	NA	unknown function
UHGV-0143572_35	UniRef90	UniRef90_A0A486H341	Membrane protein	NA
UHGV-0143572_35	eggNOG-mapper	520999.PROVALCAL_02013	NA	NA
UHGV-0143572_36	PHROG	phrog_12	portal protein	head and packaging
UHGV-0143572_36	UniRef90	UniRef90_A0A7I7A5G0	Portal protein	NA
UHGV-0143572_36	eggNOG-mapper	399742.Ent638_2600	TIGRFAM Phage portal protein, HK97	NA
UHGV-0143572_36	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0143572_36	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0143572_36	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0143572_36	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0143572_37	KOfam	K06904	NA	NA
UHGV-0143572_37	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0143572_37	UniRef90	UniRef90_A0A133LFS7	Phage prohead protease, HK97 family	NA
UHGV-0143572_37	eggNOG-mapper	667121.ET1_08_01070	Prohead protease	NA
UHGV-0143572_37	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0143572_37	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0143572_37	COG	COG3740	Phage head maturation protease	NA
UHGV-0143572_37	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0143572_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-0143572_38	UniRef90	UniRef90_A0A133LFJ6	Phage major capsid protein, HK97 family	NA
UHGV-0143572_38	eggNOG-mapper	399742.Ent638_2598	TIGRFAM Phage major capsid protein, HK97	NA
UHGV-0143572_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0143572_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0143572_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0143572_38	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0143572_39	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0143572_39	UniRef90	UniRef90_A0A3S4K328	Phage protein DNA packaging protein	NA
UHGV-0143572_39	eggNOG-mapper	1332071.L581_3141	Phage gp6-like head-tail connector protein	NA
UHGV-0143572_39	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0143572_39	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0143572_39	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0143572_40	PHROG	phrog_2612	NA	unknown function
UHGV-0143572_40	UniRef90	UniRef90_UPI001CCBEFAE	HU family DNA-binding protein	NA
UHGV-0143572_40	eggNOG-mapper	1147143.K7P6F3_9CAUD	NA	NA
UHGV-0143572_41	PHROG	phrog_25	head closure Hc1	connector
UHGV-0143572_41	UniRef90	UniRef90_A0A7I0E463	Head-tail adaptor protein	NA
UHGV-0143572_41	eggNOG-mapper	1147150.K7PH08_9CAUD	Phage head-tail joining protein	NA
UHGV-0143572_41	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0143572_41	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0143572_41	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0143572_42	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0143572_42	UniRef90	UniRef90_UPI001F326D52	HK97 gp10 family phage protein	NA
UHGV-0143572_42	eggNOG-mapper	1147150.K7PM60_9CAUD	exonuclease activity	NA
UHGV-0143572_42	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0143572_42	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0143572_42	Structural annotation	TIGR01725	NA	NA
UHGV-0143572_43	PHROG	phrog_78	tail terminator	connector
UHGV-0143572_43	UniRef90	UniRef90_A0A1X9TNY6	NA	NA
UHGV-0143572_43	eggNOG-mapper	10742.Q9MCV0_BPHK0	NA	NA
UHGV-0143572_43	Pfam	PF11367	NA	DUF3168
UHGV-0143572_43	Structural annotation	PF11367	NA	NA
UHGV-0143572_44	PHROG	phrog_158	major tail protein	tail
UHGV-0143572_44	UniRef90	UniRef90_A0A8F4G6C2	Phage tail protein	NA
UHGV-0143572_44	eggNOG-mapper	932213.SPM24T3_24191	Phage tail tube, TTP, lambda-like	NA
UHGV-0143572_44	Pfam	PF16460	Phage tail tube, TTP, lambda-like	Phage_TTP_11
UHGV-0143572_44	Structural annotation	PF16460, TIGR02241, COG5437	NA	NA
UHGV-0143572_45	PHROG	phrog_1749	tail assembly chaperone	tail
UHGV-0143572_45	UniRef90	UniRef90_A0A1X9TPF5	Phage tail protein	NA
UHGV-0143572_45	eggNOG-mapper	10742.Q9MCU8_BPHK0	Pfam:Phage_TAC_13	NA
UHGV-0143572_45	Pfam	PF16459	Phage tail assembly chaperone, TAC	Phage_TAC_13
UHGV-0143572_45	Structural annotation	PF16459	NA	NA
UHGV-0143572_46	PHROG	phrog_337	tail protein	tail
UHGV-0143572_46	UniRef90	UniRef90_A0A1X9TPM4	Phage tail protein	NA
UHGV-0143572_46	eggNOG-mapper	932213.SPM24T3_24201	NA	NA
UHGV-0143572_48	PHROG	phrog_2854	tail length tape measure protein	tail
UHGV-0143572_48	UniRef90	UniRef90_A0A8B4FT59	Phage tail tape measure protein, lambda family	NA
UHGV-0143572_48	eggNOG-mapper	932213.SPM24T3_24002	lytic transglycosylase activity	NA
UHGV-0143572_48	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0143572_48	NCBIFam	TIGR01541.1	phage tail tape measure protein	NA
UHGV-0143572_48	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0143572_49	PHROG	phrog_384	virion structural protein	head and packaging
UHGV-0143572_49	UniRef90	UniRef90_A0A6S4Y1R4	Membrane protein	NA
UHGV-0143572_49	eggNOG-mapper	158822.LH89_20565	NA	NA
UHGV-0143572_49	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA