UHGV-0143671

Genome information

Genome length 32,025 bps

CDS count 48

Completeness 87.49% (medium-quality)

geNomad score 0.9728

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143671
vOTU ID	vOTU-017391
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_394975
BioSample	SAMN04436954
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9728
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	68.55
Jumbo phage	No

Genome content
Genome length	32,025 bps
GC content	50.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	92.10%
Average CDS length	617.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143671_1	PHROG	phrog_340	NA	unknown function
UHGV-0143671_2	PHROG	phrog_1737	NA	unknown function
UHGV-0143671_2	eggNOG-mapper	1453496.AT03_15370	NA	NA
UHGV-0143671_2	Structural annotation	PF17345	NA	NA
UHGV-0143671_3	PHROG	phrog_8959	NA	unknown function
UHGV-0143671_3	eggNOG-mapper	1005994.GTGU_01793	NA	NA
UHGV-0143671_5	PHROG	phrog_27579	NA	unknown function
UHGV-0143671_6	PHROG	phrog_35952	NA	unknown function
UHGV-0143671_7	PHROG	phrog_1478	NA	unknown function
UHGV-0143671_7	eggNOG-mapper	1115512.EH105704_08_00630	NA	NA
UHGV-0143671_8	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0143671_8	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0143671_8	UniRef90	UniRef90_A0A2J4YV98	XRE family transcriptional regulator	NA
UHGV-0143671_8	eggNOG-mapper	155864.EDL933_1367	Peptidase S24-like	NA
UHGV-0143671_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143671_8	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0143671_8	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0143671_8	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0143671_10	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0143671_10	UniRef90	UniRef90_A0A2A5MIV7	Helix-turn-helix domain-containing protein	NA
UHGV-0143671_10	eggNOG-mapper	1080067.BAZH01000010_gene590	Helix-turn-helix domain	NA
UHGV-0143671_10	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0143671_10	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0143671_10	Structural annotation	PF13730, MF_01909, TIGR01610, COG5529	NA	NA
UHGV-0143671_11	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0143671_11	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0143671_11	UniRef90	UniRef90_A0A330RXU1	ATP binding protein, IstB family	NA
UHGV-0143671_11	eggNOG-mapper	1399774.JDWH01000024_gene4225	DNA replication protein	NA
UHGV-0143671_11	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0143671_11	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0143671_11	Structural annotation	PF01695, MF_01919, NF005931, COG1484	NA	NA
UHGV-0143671_12	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0143671_12	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0143671_12	UniRef90	UniRef90_A0A377ZT04	DNA helicase	NA
UHGV-0143671_12	eggNOG-mapper	1399774.JDWH01000024_gene4226	DnaB-like helicase N terminal domain	NA
UHGV-0143671_12	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0143671_12	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0143671_12	COG	COG0305	Replicative DNA helicase	NA
UHGV-0143671_12	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0143671_13	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0143671_13	UniRef90	UniRef90_A0A1Q8Z2A1	Crossover junction endodeoxyribonuclease RuvA	NA
UHGV-0143671_13	eggNOG-mapper	399742.Ent638_2254	PFAM endodeoxyribonuclease RusA	NA
UHGV-0143671_13	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0143671_13	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0143671_13	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0143671_15	PHROG	phrog_2887	NA	unknown function
UHGV-0143671_15	UniRef90	UniRef90_F4V6D2	Fels-1 prophage-like protein	NA
UHGV-0143671_15	eggNOG-mapper	1197719.A464_2032	NA	NA
UHGV-0143671_15	AcrCatalog	cluster_723	NA	NA
UHGV-0143671_16	PHROG	phrog_127	anti-termination protein Q-like	transcription regulation
UHGV-0143671_16	UniRef90	UniRef90_A0A377ZA81	Antitermination protein	NA
UHGV-0143671_16	eggNOG-mapper	1005994.GTGU_01786	Antitermination protein	NA
UHGV-0143671_16	Pfam	PF03589	Antitermination protein	Antiterm
UHGV-0143671_16	COG	COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	NA
UHGV-0143671_16	HAMAP	MF_04158	Antitermination protein Q [Q]	NA
UHGV-0143671_16	Structural annotation	PF03589, PF00684, MF_04158, TIGR02642	NA	NA
UHGV-0143671_17	PHROG	phrog_37148	NA	unknown function
UHGV-0143671_17	UniRef90	UniRef90_UPI001C1154A2	SEC-C domain-containing protein	NA
UHGV-0143671_17	eggNOG-mapper	1235802.C823_01056	NA	NA
UHGV-0143671_18	PHROG	phrog_198	holin	lysis
UHGV-0143671_18	UniRef90	UniRef90_A0A377Z8S5	Putative prophage membrane protein	NA
UHGV-0143671_18	eggNOG-mapper	571.MC52_01470	Prophage membrane protein	NA
UHGV-0143671_18	Pfam	PF16931	Putative phage holin	Phage_holin_8
UHGV-0143671_18	Structural annotation	PF16931	NA	NA
UHGV-0143671_19	PHROG	phrog_217	holin	lysis
UHGV-0143671_19	UniRef90	UniRef90_A0A8A7HT82	Phage holin family protein	NA
UHGV-0143671_19	eggNOG-mapper	571.MC52_01465	Putative 3TM holin, Phage_holin_3	NA
UHGV-0143671_19	Pfam	PF05449	Putative 3TM holin, Phage_holin_3	Phage_holin_3_7
UHGV-0143671_20	KOfam	K03791	K03791; putative chitinase	NA
UHGV-0143671_20	PHROG	phrog_181	endolysin	lysis
UHGV-0143671_20	UniRef90	UniRef90_A0A163VDW5	Lytic enzyme	NA
UHGV-0143671_20	eggNOG-mapper	1399774.JDWH01000016_gene3440	Chitinase class I	NA
UHGV-0143671_20	Pfam	PF00182	Chitinase class I	Glyco_hydro_19
UHGV-0143671_20	COG	COG3179	Chitinase, GH19 family	NA
UHGV-0143671_20	Structural annotation	PF00182, TIGR02282, COG3179	NA	NA
UHGV-0143671_21	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-0143671_21	eggNOG-mapper	573.JG24_10940	NA	NA
UHGV-0143671_22	PHROG	phrog_571	NA	unknown function
UHGV-0143671_22	UniRef90	UniRef90_A0A0C7EYH0	NA	NA
UHGV-0143671_22	eggNOG-mapper	1028307.EAE_22330	NA	NA
UHGV-0143671_22	Pfam	PF10834	NA	DUF2560
UHGV-0143671_22	Structural annotation	PF10834	NA	NA
UHGV-0143671_23	PHROG	phrog_585	NA	unknown function
UHGV-0143671_23	UniRef90	UniRef90_A0A6B8MJT0	NA	NA
UHGV-0143671_23	eggNOG-mapper	1166130.H650_06880	NA	NA
UHGV-0143671_23	Pfam	PF10711	NA	DUF2513
UHGV-0143671_23	Structural annotation	PF10711, MF_01819, NF002926	NA	NA
UHGV-0143671_24	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0143671_24	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0143671_24	UniRef90	UniRef90_A0A2I8XR41	HNH endonuclease	NA
UHGV-0143671_24	eggNOG-mapper	640513.Entas_3084	HNH endonuclease	NA
UHGV-0143671_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0143671_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0143671_24	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0143671_25	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0143671_25	UniRef90	UniRef90_A0A859X1P8	Phage terminase small subunit P27 family	NA
UHGV-0143671_25	eggNOG-mapper	175950.Q8HAD7_9CAUD	Phage terminase, small subunit	NA
UHGV-0143671_25	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0143671_25	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0143671_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0143671_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0143671_26	UniRef90	UniRef90_A0A210UY68	Terminase large subunit	NA
UHGV-0143671_26	eggNOG-mapper	640513.Entas_3082	Phage Terminase	NA
UHGV-0143671_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0143671_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0143671_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0143671_26	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0143671_27	PHROG	phrog_502	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0143671_27	eggNOG-mapper	1440052.EAKF1_ch0465c	NA	NA
UHGV-0143671_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-0143671_28	UniRef90	UniRef90_A0A237PU11	Phage portal protein	NA
UHGV-0143671_28	eggNOG-mapper	640513.Entas_3080	TIGRFAM Phage portal protein, HK97	NA
UHGV-0143671_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0143671_28	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0143671_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0143671_28	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0143671_29	KOfam	K06904	NA	NA
UHGV-0143671_29	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0143671_29	UniRef90	UniRef90_UPI00129CC7C8	HK97 family phage prohead protease	NA
UHGV-0143671_29	eggNOG-mapper	640513.Entas_3079	Caudovirus prohead serine protease	NA
UHGV-0143671_29	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0143671_29	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0143671_29	COG	COG3740	Phage head maturation protease	NA
UHGV-0143671_29	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0143671_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-0143671_30	UniRef90	UniRef90_E6WKD7	Phage major capsid protein, HK97 family	NA
UHGV-0143671_30	eggNOG-mapper	640513.Entas_3078	TIGRFAM Phage major capsid protein, HK97	NA
UHGV-0143671_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0143671_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0143671_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0143671_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0143671_31	PHROG	phrog_21989	NA	unknown function
UHGV-0143671_31	UniRef90	UniRef90_Q8HAD1	Sb7	NA
UHGV-0143671_31	eggNOG-mapper	1216966.BAUC01000041_gene2872	NA	NA
UHGV-0143671_32	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0143671_32	UniRef90	UniRef90_A0A859X296	Phage gp6-like head-tail connector protein	NA
UHGV-0143671_32	eggNOG-mapper	640513.Entas_3076	Phage gp6-like head-tail connector protein	NA
UHGV-0143671_32	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0143671_32	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0143671_32	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0143671_33	PHROG	phrog_2612	NA	unknown function
UHGV-0143671_33	UniRef90	UniRef90_A0A8F4G2J7	HU family DNA-binding protein	NA
UHGV-0143671_33	eggNOG-mapper	1147143.K7P6F3_9CAUD	NA	NA
UHGV-0143671_34	PHROG	phrog_25	head closure Hc1	connector
UHGV-0143671_34	UniRef90	UniRef90_A0A7I0E463	Head-tail adaptor protein	NA
UHGV-0143671_34	eggNOG-mapper	1147150.K7PH08_9CAUD	Phage head-tail joining protein	NA
UHGV-0143671_34	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0143671_34	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0143671_34	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0143671_35	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0143671_35	UniRef90	UniRef90_UPI001F326D52	HK97 gp10 family phage protein	NA
UHGV-0143671_35	eggNOG-mapper	1147150.K7PM60_9CAUD	exonuclease activity	NA
UHGV-0143671_35	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0143671_35	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0143671_35	Structural annotation	TIGR01725	NA	NA
UHGV-0143671_36	PHROG	phrog_78	tail terminator	connector
UHGV-0143671_36	UniRef90	UniRef90_A0A1X9TNY6	NA	NA
UHGV-0143671_36	eggNOG-mapper	10742.Q9MCV0_BPHK0	NA	NA
UHGV-0143671_36	Pfam	PF11367	NA	DUF3168
UHGV-0143671_36	Structural annotation	PF11367	NA	NA
UHGV-0143671_37	PHROG	phrog_158	major tail protein	tail
UHGV-0143671_37	UniRef90	UniRef90_A0A8F4G6C2	Phage tail protein	NA
UHGV-0143671_37	eggNOG-mapper	932213.SPM24T3_24191	Phage tail tube, TTP, lambda-like	NA
UHGV-0143671_37	Pfam	PF16460	Phage tail tube, TTP, lambda-like	Phage_TTP_11
UHGV-0143671_37	Structural annotation	PF16460, TIGR02241, COG5437	NA	NA
UHGV-0143671_38	PHROG	phrog_1749	tail assembly chaperone	tail
UHGV-0143671_38	UniRef90	UniRef90_UPI0005165ADE	phage tail assembly chaperone family protein, TAC	NA
UHGV-0143671_38	eggNOG-mapper	640513.Entas_3070	Phage tail assembly chaperone, TAC	NA
UHGV-0143671_38	Pfam	PF16459	Phage tail assembly chaperone, TAC	Phage_TAC_13
UHGV-0143671_38	Structural annotation	PF16459	NA	NA
UHGV-0143671_39	PHROG	phrog_337	tail protein	tail
UHGV-0143671_39	UniRef90	UniRef90_A0A8A7GDE6	Phage tail protein	NA
UHGV-0143671_39	eggNOG-mapper	932213.SPM24T3_24201	NA	NA
UHGV-0143671_40	PHROG	phrog_8032	NA	unknown function
UHGV-0143671_40	UniRef90	UniRef90_UPI001C451FAF	LPXTG cell wall anchor domain-containing protein	NA
UHGV-0143671_40	eggNOG-mapper	520999.PROVALCAL_03987	NA	NA
UHGV-0143671_41	PHROG	phrog_2854	tail length tape measure protein	tail
UHGV-0143671_41	UniRef90	UniRef90_A0A378EEN0	Prophage tail length tape measure	NA
UHGV-0143671_41	eggNOG-mapper	640513.Entas_3068	lytic transglycosylase activity	NA
UHGV-0143671_41	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0143671_41	NCBIFam	TIGR01541.1	phage tail tape measure protein	NA
UHGV-0143671_41	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0143671_42	PHROG	phrog_384	virion structural protein	head and packaging
UHGV-0143671_42	UniRef90	UniRef90_A0A377Z7R0	Alkanesulfonate ABC transporter permease	NA
UHGV-0143671_42	eggNOG-mapper	1028307.EAE_21020	NA	NA
UHGV-0143671_42	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0143671_43	PHROG	phrog_396	minor tail protein	tail
UHGV-0143671_43	UniRef90	UniRef90_A0A377ZDS5	ArsR family transcriptional regulator	NA
UHGV-0143671_43	eggNOG-mapper	371042.NG99_23805	NA	NA
UHGV-0143671_43	Pfam	PF08875	NA	DUF1833
UHGV-0143671_43	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0143671_44	PHROG	phrog_329	minor tail protein	tail
UHGV-0143671_44	UniRef90	UniRef90_A0A330XBC2	Nitrite transporter	NA
UHGV-0143671_44	eggNOG-mapper	1225184.ALXE01000018_gene3828	NA	NA
UHGV-0143671_44	Structural annotation	TIGR02219	NA	NA
UHGV-0143671_45	PHROG	phrog_469	tail protein	tail
UHGV-0143671_45	UniRef90	UniRef90_A0A443WQ78	Kinase	NA
UHGV-0143671_45	eggNOG-mapper	571.MC52_01330	cellulase activity	NA
UHGV-0143671_45	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0143671_45	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0143671_45	Structural annotation	PF13550, NF040662, TIGR01683, COG2104	NA	NA
UHGV-0143671_46	PHROG	phrog_4201	tail fiber protein	tail
UHGV-0143671_46	UniRef90	UniRef90_UPI001F3644E8	sialate O-acetylesterase	NA
UHGV-0143671_46	eggNOG-mapper	571.MC52_01315	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-0143671_46	Pfam	PF03629	Carbohydrate esterase, sialic acid-specific acetylesterase	SASA
UHGV-0143671_46	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0143671_46	Structural annotation	PF03629	NA	NA
UHGV-0143671_48	UniRef90	UniRef90_UPI0010338A90	helix-turn-helix domain-containing protein	NA
UHGV-0143671_48	eggNOG-mapper	571.MC52_18360	Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0143671_48	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA