UHGV-0143710

Genome information

Genome length 36,300 bps

CDS count 65

Completeness 99.89% (high-quality)

geNomad score 0.9441

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143710
vOTU ID	vOTU-066849
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_441980
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.89% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9441
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.02
Jumbo phage	No

Genome content
Genome length	36,300 bps
GC content	34.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	93.18%
Average CDS length	523.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143710_1	KOfam	K14059	int; integrase	NA
UHGV-0143710_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0143710_1	UniRef90	UniRef90_UPI000E46F6FE	site-specific integrase	NA
UHGV-0143710_1	eggNOG-mapper	1232446.BAIE02000002_gene793	Phage integrase family	NA
UHGV-0143710_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0143710_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0143710_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0143710_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0143710_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0143710_2	PHROG	phrog_26910	NA	unknown function
UHGV-0143710_2	eggNOG-mapper	536232.CLM_1686	NA	NA
UHGV-0143710_3	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0143710_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0143710_3	UniRef90	UniRef90_G9R0X7	HTH cro/C1-type domain-containing protein	NA
UHGV-0143710_3	eggNOG-mapper	742741.HMPREF9475_00399	Helix-turn-helix XRE-family like proteins	NA
UHGV-0143710_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143710_3	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0143710_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0143710_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0143710_5	UniRef90	UniRef90_A0A1M7YBZ8	Helix-turn-helix domain-containing protein	NA
UHGV-0143710_5	eggNOG-mapper	1235800.C819_00522	Helix-turn-helix XRE-family like proteins	NA
UHGV-0143710_5	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0143710_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0143710_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0143710_7	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0143710_7	UniRef90	UniRef90_UPI001D093EF2	ORF6C domain-containing protein	NA
UHGV-0143710_7	eggNOG-mapper	1232446.BAIE02000011_gene1630	ORF6C domain	NA
UHGV-0143710_7	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0143710_7	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0143710_7	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0143710_7	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0143710_9	PHROG	phrog_6996	NA	unknown function
UHGV-0143710_10	UniRef90	UniRef90_A0A3E3ACS2	DNA-binding protein	NA
UHGV-0143710_13	PHROG	phrog_7445	NA	unknown function
UHGV-0143710_13	UniRef90	UniRef90_UPI001C2C3882	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0143710_13	eggNOG-mapper	1122989.KB898582_gene1853	PcfK-like protein	NA
UHGV-0143710_13	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0143710_14	PHROG	phrog_8470	NA	unknown function
UHGV-0143710_14	UniRef90	UniRef90_UPI000E4E20B7	PcfJ domain-containing protein	NA
UHGV-0143710_14	eggNOG-mapper	1232446.BAIE02000011_gene1624	PcfJ-like protein	NA
UHGV-0143710_14	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0143710_14	Structural annotation	PF14284, NF008072	NA	NA
UHGV-0143710_18	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0143710_18	PHROG	phrog_216	integrase	integration and excision
UHGV-0143710_18	UniRef90	UniRef90_A0A7U9CL76	Tyr recombinase domain-containing protein	NA
UHGV-0143710_18	eggNOG-mapper	1232446.BAIE02000002_gene805	Integrase	NA
UHGV-0143710_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0143710_18	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0143710_18	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0143710_20	PHROG	phrog_5051	NA	unknown function
UHGV-0143710_22	PHROG	phrog_7711	NA	unknown function
UHGV-0143710_22	UniRef90	UniRef90_UPI001C38CAD2	Lar family restriction alleviation protein	NA
UHGV-0143710_22	eggNOG-mapper	268407.PWYN_15580	NA	NA
UHGV-0143710_24	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0143710_24	UniRef90	UniRef90_A0A3E3EG87	SAM-dependent methyltransferase	NA
UHGV-0143710_24	eggNOG-mapper	1232446.BAIE02000011_gene1614	methyltransferase	NA
UHGV-0143710_24	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0143710_24	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0143710_24	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0143710_24	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0143710_26	PHROG	phrog_625	NA	unknown function
UHGV-0143710_26	UniRef90	UniRef90_A0A3E3EHP8	ASCH domain-containing protein	NA
UHGV-0143710_26	eggNOG-mapper	397290.C810_01502	NA	NA
UHGV-0143710_26	Structural annotation	PF12961, NF002008, COG2028	NA	NA
UHGV-0143710_27	PHROG	phrog_421	NA	unknown function
UHGV-0143710_27	UniRef90	UniRef90_UPI001D08F4DA	NA	NA
UHGV-0143710_27	eggNOG-mapper	1536769.P40081_01010	NA	NA
UHGV-0143710_27	Pfam	PF10979	NA	DUF2786
UHGV-0143710_27	COG	COG1451	UTP pyrophosphatase, metal-dependent hydrolase family	NA
UHGV-0143710_28	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0143710_28	UniRef90	UniRef90_UPI000497F8A6	helix-turn-helix domain-containing protein	NA
UHGV-0143710_28	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0143710_28	Structural annotation	PF01978, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-0143710_29	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0143710_29	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0143710_29	UniRef90	UniRef90_G9R103	SF4 helicase domain-containing protein	NA
UHGV-0143710_29	eggNOG-mapper	1232446.BAIE02000002_gene817	Participates in initiation and elongation during chromosome replication	NA
UHGV-0143710_29	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0143710_29	COG	COG0305	Replicative DNA helicase	NA
UHGV-0143710_29	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0143710_32	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0143710_32	UniRef90	UniRef90_A0A3E3ADS4	HNH endonuclease	NA
UHGV-0143710_32	eggNOG-mapper	1232446.BAIE02000002_gene820	HNH nucleases	NA
UHGV-0143710_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0143710_34	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0143710_34	UniRef90	UniRef90_A0A3E3ADK1	Terminase	NA
UHGV-0143710_34	eggNOG-mapper	1232446.BAIE02000002_gene822	Phage terminase, small subunit	NA
UHGV-0143710_34	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0143710_34	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0143710_35	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0143710_35	UniRef90	UniRef90_A0A3E3ADF9	Terminase large subunit	NA
UHGV-0143710_35	eggNOG-mapper	1232446.BAIE02000002_gene823	Phage Terminase	NA
UHGV-0143710_35	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0143710_35	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0143710_35	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0143710_35	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0143710_36	PHROG	phrog_12	portal protein	head and packaging
UHGV-0143710_36	UniRef90	UniRef90_A0A3E3AEZ3	Phage portal protein	NA
UHGV-0143710_36	eggNOG-mapper	1232446.BAIE02000002_gene824	Phage portal protein, HK97 family	NA
UHGV-0143710_36	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0143710_36	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0143710_36	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0143710_36	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0143710_37	KOfam	K06904	NA	NA
UHGV-0143710_37	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0143710_37	UniRef90	UniRef90_A0A3E3AEE5	HK97 family phage prohead protease	NA
UHGV-0143710_37	eggNOG-mapper	1232446.BAIE02000002_gene825	Phage prohead protease, HK97 family	NA
UHGV-0143710_37	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0143710_37	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0143710_37	COG	COG3740	Phage head maturation protease	NA
UHGV-0143710_37	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0143710_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-0143710_38	UniRef90	UniRef90_A0A3E3ACQ3	Phage major capsid protein	NA
UHGV-0143710_38	eggNOG-mapper	1232446.BAIE02000002_gene826	phage major capsid protein, HK97 family	NA
UHGV-0143710_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0143710_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0143710_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0143710_38	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0143710_39	PHROG	phrog_2550	NA	unknown function
UHGV-0143710_39	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-0143710_39	eggNOG-mapper	1232446.BAIE02000002_gene827	NA	NA
UHGV-0143710_39	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0143710_39	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0143710_40	PHROG	phrog_19734	NA	unknown function
UHGV-0143710_40	UniRef90	UniRef90_A0A3E3ACV2	Head-tail adaptor protein	NA
UHGV-0143710_40	eggNOG-mapper	1232446.BAIE02000002_gene828	NA	NA
UHGV-0143710_40	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0143710_41	PHROG	phrog_78	tail terminator	connector
UHGV-0143710_41	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-0143710_41	Structural annotation	PF05657	NA	NA
UHGV-0143710_42	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0143710_42	eggNOG-mapper	1232446.BAIE02000002_gene830	NA	NA
UHGV-0143710_42	Structural annotation	TIGR01725	NA	NA
UHGV-0143710_43	PHROG	phrog_88	major tail protein	tail
UHGV-0143710_43	UniRef90	UniRef90_A0A3E3ACS6	Phage tail protein	NA
UHGV-0143710_43	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0143710_43	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0143710_44	eggNOG-mapper	1235798.C817_04591	NA	NA
UHGV-0143710_46	PHROG	phrog_23464	NA	unknown function
UHGV-0143710_46	eggNOG-mapper	1232446.BAIE02000002_gene834	tape measure	NA
UHGV-0143710_46	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0143710_46	Structural annotation	PF20155	NA	NA
UHGV-0143710_47	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0143710_47	UniRef90	UniRef90_A0A3E3AF06	Phage tail protein	NA
UHGV-0143710_47	eggNOG-mapper	1232446.BAIE02000002_gene835	phage tail	NA
UHGV-0143710_47	COG	COG4722	Phage-related protein YomH	NA
UHGV-0143710_47	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0143710_48	PHROG	phrog_13289	tail protein	tail
UHGV-0143710_48	UniRef90	UniRef90_A0A3E3AEF9	Peptidase S74 domain-containing protein	NA
UHGV-0143710_48	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-0143710_48	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0143710_48	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0143710_48	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0143710_48	COG	COG4926	Phage-related protein	NA
UHGV-0143710_48	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0143710_49	eggNOG-mapper	999413.HMPREF1094_01998	NA	NA
UHGV-0143710_50	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0143710_50	PHROG	phrog_11157	NA	unknown function
UHGV-0143710_50	UniRef90	UniRef90_G9R125	Big_13 domain-containing protein	NA
UHGV-0143710_50	eggNOG-mapper	1232446.BAIE02000011_gene1582	NA	NA
UHGV-0143710_50	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0143710_50	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0143710_50	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0143710_51	PHROG	phrog_32322	NA	unknown function
UHGV-0143710_51	UniRef90	UniRef90_G9R126	Ig-like_bact domain-containing protein	NA
UHGV-0143710_51	eggNOG-mapper	1232446.BAIE02000011_gene1581	NA	NA
UHGV-0143710_51	Pfam	PF13754	NA	Big_3_4
UHGV-0143710_51	Structural annotation	PF13754	NA	NA
UHGV-0143710_52	eggNOG-mapper	411461.DORFOR_01184	NA	NA
UHGV-0143710_52	Structural annotation	PF07703, TIGR02657, COG2372	NA	NA
UHGV-0143710_55	PHROG	phrog_24267	NA	unknown function
UHGV-0143710_55	UniRef90	UniRef90_A0A173T301	Phage-related holin (Lysis protein)	NA
UHGV-0143710_55	eggNOG-mapper	658655.HMPREF0988_00525	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0143710_55	COG	COG4675	Phage tail collar domain	NA
UHGV-0143710_55	Structural annotation	COG4675	NA	NA
UHGV-0143710_59	PHROG	phrog_1129	holin	lysis
UHGV-0143710_59	UniRef90	UniRef90_A0A0J8Z1S7	Holin protein	NA
UHGV-0143710_59	eggNOG-mapper	1123075.AUDP01000020_gene1532	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0143710_59	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0143710_59	Structural annotation	PF06946	NA	NA
UHGV-0143710_60	PHROG	phrog_4105	NA	unknown function
UHGV-0143710_60	eggNOG-mapper	1121105.ATXL01000027_gene760	NA	NA
UHGV-0143710_61	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0143710_61	PHROG	phrog_3088	amidase	lysis
UHGV-0143710_61	UniRef90	UniRef90_A0A3E3AF17	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0143710_61	eggNOG-mapper	1232446.BAIE02000094_gene1162	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0143710_61	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0143710_61	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0143710_61	Structural annotation	PF01510, PF18342, MF_04111, NF008758, NF040670, COG5632	NA	NA
UHGV-0143710_64	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0143710_64	UniRef90	UniRef90_A0A6B4QZ31	AP2 domain-containing protein	NA
UHGV-0143710_64	eggNOG-mapper	478749.BRYFOR_06584	AP2 domain protein	NA
UHGV-0143710_64	Pfam	PF21817	CapR homology domain	CapR
UHGV-0143710_64	Structural annotation	PF18337, PF00847	NA	NA