UHGV-0143733

Genome information

Genome length 26,816 bps

CDS count 39

Completeness 93.34% (high-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143733
vOTU ID	vOTU-014440
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_442260
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.34% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.37
Jumbo phage	No

Genome content
Genome length	26,816 bps
GC content	46.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	94.28%
Average CDS length	653.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143733_1	PHROG	phrog_21765	NA	unknown function
UHGV-0143733_1	eggNOG-mapper	411473.RUMCAL_00420	nuclear chromosome segregation	NA
UHGV-0143733_1	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0143733_2	PHROG	phrog_19291	NA	unknown function
UHGV-0143733_2	eggNOG-mapper	1232449.BAHV02000021_gene1072	NA	NA
UHGV-0143733_2	Structural annotation	PF02191, COG3823	NA	NA
UHGV-0143733_3	PHROG	phrog_23052	NA	unknown function
UHGV-0143733_3	eggNOG-mapper	946235.CAER01000065_gene2433	NA	NA
UHGV-0143733_3	Structural annotation	PF14879, PF09931, NF033848, NF033147, COG3500	NA	NA
UHGV-0143733_4	eggNOG-mapper	862517.HMPREF9225_0492	NA	NA
UHGV-0143733_4	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0143733_5	KOfam	K10398	KIF11, EG5; kinesin family member 11	NA
UHGV-0143733_5	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0143733_5	UniRef90	UniRef90_A0A1Y4NYS4	PhageMin_Tail domain-containing protein	NA
UHGV-0143733_5	eggNOG-mapper	411468.CLOSCI_00194	Phage tail tape measure protein, TP901 family	NA
UHGV-0143733_5	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0143733_5	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0143733_5	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0143733_6	PHROG	phrog_709	NA	unknown function
UHGV-0143733_6	eggNOG-mapper	1118057.CAGX01000043_gene483	NA	NA
UHGV-0143733_6	Structural annotation	PF11836	NA	NA
UHGV-0143733_7	PHROG	phrog_88	major tail protein	tail
UHGV-0143733_7	UniRef90	UniRef90_A0A2X2WSP4	Phage major tail protein, phi13 family	NA
UHGV-0143733_7	eggNOG-mapper	397288.C806_00806	phage major tail protein, phi13 family	NA
UHGV-0143733_7	Pfam	PF06488	Phage tail tube protein	L_lac_phage_MSP
UHGV-0143733_7	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0143733_7	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0143733_8	PHROG	phrog_78	tail terminator	connector
UHGV-0143733_8	eggNOG-mapper	1384066.JAGT01000001_gene933	NA	NA
UHGV-0143733_8	Structural annotation	PF20765	NA	NA
UHGV-0143733_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0143733_9	UniRef90	UniRef90_A0A7X9XQD6	HK97 gp10 family phage protein	NA
UHGV-0143733_9	eggNOG-mapper	883112.HMPREF9707_01608	NA	NA
UHGV-0143733_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0143733_9	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0143733_10	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0143733_10	UniRef90	UniRef90_D1PND3	Putative phage head-tail adaptor	NA
UHGV-0143733_10	eggNOG-mapper	411471.SUBVAR_05854	NA	NA
UHGV-0143733_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0143733_11	PHROG	phrog_5223	neck protein	connector
UHGV-0143733_11	UniRef90	UniRef90_E6MGY0	Putative phage DNA packaging protein	NA
UHGV-0143733_11	eggNOG-mapper	887929.HMP0721_1264	NA	NA
UHGV-0143733_11	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0143733_11	Structural annotation	TIGR01560	NA	NA
UHGV-0143733_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0143733_12	UniRef90	UniRef90_A0A8J6P3N1	Phage major capsid protein	NA
UHGV-0143733_12	eggNOG-mapper	411465.PEPMIC_00735	Phage capsid family	NA
UHGV-0143733_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0143733_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0143733_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0143733_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0143733_13	KOfam	K06904	NA	NA
UHGV-0143733_13	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0143733_13	UniRef90	UniRef90_A0A1C5W530	Phage prohead protease, HK97 family	NA
UHGV-0143733_13	eggNOG-mapper	742740.HMPREF9474_04305	Phage prohead protease, HK97 family	NA
UHGV-0143733_13	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0143733_13	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0143733_13	COG	COG3740	Phage head maturation protease	NA
UHGV-0143733_13	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0143733_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-0143733_14	UniRef90	UniRef90_E6MGY3	Putative phage portal protein, HK97 family	NA
UHGV-0143733_14	eggNOG-mapper	887929.HMP0721_1267	Phage portal protein	NA
UHGV-0143733_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0143733_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0143733_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0143733_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0143733_15	UniRef90	UniRef90_UPI00073E3369	terminase large subunit	NA
UHGV-0143733_15	eggNOG-mapper	742740.HMPREF9474_04307	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0143733_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0143733_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0143733_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0143733_15	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0143733_16	PHROG	phrog_1066	NA	unknown function
UHGV-0143733_16	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-0143733_17	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0143733_17	UniRef90	UniRef90_UPI0005937579	HNH endonuclease	NA
UHGV-0143733_17	eggNOG-mapper	887929.HMP0721_1270	HNH nucleases	NA
UHGV-0143733_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0143733_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0143733_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0143733_18	eggNOG-mapper	457415.HMPREF1006_00450	sigma factor activity	NA
UHGV-0143733_18	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0143733_23	PHROG	phrog_31564	NA	unknown function
UHGV-0143733_26	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0143733_27	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0143733_27	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0143733_27	UniRef90	UniRef90_A0A316PVX4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0143733_27	eggNOG-mapper	665950.HMPREF1025_02637	Endodeoxyribonuclease RusA	NA
UHGV-0143733_27	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0143733_27	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0143733_27	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0143733_28	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0143733_28	UniRef90	UniRef90_A0A3E2U1Y9	DNA cytosine methyltransferase	NA
UHGV-0143733_28	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0143733_28	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0143733_28	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0143733_29	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0143733_29	eggNOG-mapper	445972.ANACOL_01819	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0143733_29	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0143733_29	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0143733_30	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0143733_30	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0143733_30	UniRef90	UniRef90_R7F9X3	IstB_IS21 domain-containing protein	NA
UHGV-0143733_30	eggNOG-mapper	411473.RUMCAL_01914	NA	NA
UHGV-0143733_30	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0143733_30	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0143733_30	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0143733_31	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0143733_31	UniRef90	UniRef90_A0A2S7ZGS0	Replisome organizer	NA
UHGV-0143733_31	eggNOG-mapper	411473.RUMCAL_00873	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0143733_31	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0143733_31	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0143733_31	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0143733_31	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0143733_32	eggNOG-mapper	1203606.HMPREF1526_00222	NA	NA
UHGV-0143733_33	Structural annotation	PF17888	NA	NA
UHGV-0143733_34	Structural annotation	PF10743	NA	NA
UHGV-0143733_35	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0143733_35	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0143733_35	UniRef90	UniRef90_A0A374HR43	XRE family transcriptional regulator	NA
UHGV-0143733_35	eggNOG-mapper	515635.Dtur_1292	sequence-specific DNA binding	NA
UHGV-0143733_35	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0143733_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143733_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0143733_35	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0143733_36	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0143733_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0143733_36	UniRef90	UniRef90_UPI00189E1B38	helix-turn-helix domain-containing protein	NA
UHGV-0143733_36	eggNOG-mapper	986075.CathTA2_2425	Transcriptional	NA
UHGV-0143733_36	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0143733_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143733_36	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0143733_36	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0143733_37	PHROG	phrog_87	metallo-protease	other
UHGV-0143733_37	UniRef90	UniRef90_A0A7X9BSM0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0143733_37	eggNOG-mapper	1507.HMPREF0262_00423	IrrE N-terminal-like domain	NA
UHGV-0143733_37	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0143733_37	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0143733_37	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0143733_38	eggNOG-mapper	1280664.AUIX01000005_gene2823	NA	NA
UHGV-0143733_38	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0143733_39	KOfam	K14059	int; integrase	NA
UHGV-0143733_39	PHROG	phrog_1	integrase	integration and excision
UHGV-0143733_39	UniRef90	UniRef90_A0A7X9GK55	Site-specific integrase	NA
UHGV-0143733_39	eggNOG-mapper	1007096.BAGW01000006_gene1761	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0143733_39	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0143733_39	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0143733_39	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0143733_39	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA