UHGV-0143789

Genome information

Genome length 23,541 bps

CDS count 38

Completeness 65.34% (medium-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143789
vOTU ID	vOTU-016881
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_436451
BioSample	SAMN06016343
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.34% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.29
Jumbo phage	No

Genome content
Genome length	23,541 bps
GC content	56.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	90.04%
Average CDS length	560.29 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143789_1	KOfam	K14059	int; integrase	NA
UHGV-0143789_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0143789_1	UniRef90	UniRef90_A0A3F3JU91	Tyr recombinase domain-containing protein	NA
UHGV-0143789_1	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0143789_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0143789_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0143789_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0143789_1	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0143789_3	eggNOG-mapper	641112.ACOK01000103_gene519	NA	NA
UHGV-0143789_4	eggNOG-mapper	1280676.AUJO01000009_gene1947	NA	NA
UHGV-0143789_4	Structural annotation	PF02556, MF_00821, NF004392, COG1952	NA	NA
UHGV-0143789_5	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0143789_5	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0143789_5	UniRef90	UniRef90_A0A6N7TQ25	Helix-turn-helix domain-containing protein	NA
UHGV-0143789_5	eggNOG-mapper	748224.HMPREF9436_03379	sequence-specific DNA binding	NA
UHGV-0143789_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143789_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0143789_6	UniRef90	UniRef90_UPI001CBE4822	helix-turn-helix domain-containing protein	NA
UHGV-0143789_6	eggNOG-mapper	1226322.HMPREF1545_00148	Transcriptional	NA
UHGV-0143789_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143789_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0143789_6	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0143789_7	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0143789_7	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0143789_7	UniRef90	UniRef90_A0A2A7BH16	HTH cro/C1-type domain-containing protein	NA
UHGV-0143789_7	eggNOG-mapper	411483.FAEPRAA2165_03041	NA	NA
UHGV-0143789_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143789_7	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0143789_7	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0143789_7	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0143789_8	UniRef90	UniRef90_A0A2A7BGV0	HTH_8 domain-containing protein	NA
UHGV-0143789_8	eggNOG-mapper	1033744.CAEL01000029_gene1308	NA	NA
UHGV-0143789_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143789_8	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0143789_10	Structural annotation	NF041909	NA	NA
UHGV-0143789_11	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0143789_11	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0143789_11	UniRef90	UniRef90_A0A2J4JRR8	Phage regulatory protein/antirepressor Ant	NA
UHGV-0143789_11	eggNOG-mapper	1449343.JQLQ01000002_gene1368	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0143789_11	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0143789_11	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0143789_11	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0143789_11	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0143789_11	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0143789_12	UniRef90	UniRef90_A0A2J4JRR2	XRE family transcriptional regulator	NA
UHGV-0143789_12	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0143789_13	UniRef90	UniRef90_UPI00130EBC54	NA	NA
UHGV-0143789_13	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0143789_13	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0143789_14	PHROG	phrog_32852	NA	unknown function
UHGV-0143789_15	PHROG	phrog_37789	NA	unknown function
UHGV-0143789_19	PHROG	phrog_38771	NA	unknown function
UHGV-0143789_20	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0143789_20	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-0143789_20	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0143789_20	Pfam	PF04404	ERF superfamily	ERF
UHGV-0143789_20	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0143789_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0143789_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0143789_21	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0143789_21	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0143789_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0143789_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0143789_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0143789_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0143789_21	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0143789_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0143789_23	UniRef90	UniRef90_UPI001CBDED93	phage minor capsid protein	NA
UHGV-0143789_23	eggNOG-mapper	748224.HMPREF9436_03339	NA	NA
UHGV-0143789_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0143789_23	COG	COG2369	NA	NA
UHGV-0143789_23	Structural annotation	PF06152	NA	NA
UHGV-0143789_26	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0143789_26	UniRef90	UniRef90_E6U604	Minor structural GP20 protein	NA
UHGV-0143789_26	eggNOG-mapper	663278.Ethha_0093	NA	NA
UHGV-0143789_26	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0143789_26	Structural annotation	PF06810	NA	NA
UHGV-0143789_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0143789_27	UniRef90	UniRef90_A0A2A7AII3	Phage major capsid protein	NA
UHGV-0143789_27	eggNOG-mapper	1120998.AUFC01000030_gene2236	Phage capsid family	NA
UHGV-0143789_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0143789_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0143789_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0143789_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0143789_28	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0143789_29	PHROG	phrog_3366	NA	unknown function
UHGV-0143789_29	Structural annotation	PF20536	NA	NA
UHGV-0143789_30	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0143789_30	UniRef90	UniRef90_UPI0015CF23D2	minor capsid protein	NA
UHGV-0143789_30	eggNOG-mapper	718252.FP2_06630	Minor capsid protein	NA
UHGV-0143789_30	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0143789_30	Structural annotation	PF11114	NA	NA
UHGV-0143789_31	PHROG	phrog_3266	tail completion	connector
UHGV-0143789_31	UniRef90	UniRef90_UPI000D830B30	chloramphenicol resistance protein	NA
UHGV-0143789_31	eggNOG-mapper	748224.HMPREF9436_03331	NA	NA
UHGV-0143789_31	Structural annotation	PF12691	NA	NA
UHGV-0143789_32	PHROG	phrog_820	major tail protein	tail
UHGV-0143789_32	eggNOG-mapper	748224.HMPREF9436_03330	NA	NA
UHGV-0143789_32	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0143789_33	PHROG	phrog_4450	NA	unknown function
UHGV-0143789_33	Pfam	PF20378	NA	DUF6673
UHGV-0143789_33	Structural annotation	PF20378	NA	NA
UHGV-0143789_34	PHROG	phrog_706	NA	unknown function
UHGV-0143789_34	UniRef90	UniRef90_E2ZNP9	Bacteriophage Gp15 protein	NA
UHGV-0143789_34	eggNOG-mapper	748224.HMPREF9436_03328	Bacteriophage Gp15 protein	NA
UHGV-0143789_34	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0143789_34	Structural annotation	PF06854	NA	NA
UHGV-0143789_35	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0143789_35	UniRef90	UniRef90_A0A316RYK9	Phage tail tape measure protein	NA
UHGV-0143789_35	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-0143789_35	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0143789_35	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0143789_35	COG	COG5283	Phage-related tail protein	NA
UHGV-0143789_35	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0143789_36	PHROG	phrog_36410	NA	unknown function
UHGV-0143789_36	UniRef90	UniRef90_UPI00130E98E0	phage tail family protein	NA
UHGV-0143789_36	eggNOG-mapper	748224.HMPREF9436_03325	Phage tail protein	NA
UHGV-0143789_36	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0143789_37	PHROG	phrog_538	minor tail protein	tail
UHGV-0143789_37	UniRef90	UniRef90_UPI0011064D4D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0143789_37	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-0143789_37	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0143789_37	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0143789_38	PHROG	phrog_9534	head protein	head and packaging
UHGV-0143789_38	eggNOG-mapper	748224.HMPREF9436_03323	COG NOG18825 non supervised orthologous group	NA