UHGV-0143800

Genome information

Genome length 37,047 bps

CDS count 53

Completeness 95.97% (high-quality)

geNomad score 0.9707

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143800
vOTU ID	vOTU-008641
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_436445
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.97% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9707
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.22
Jumbo phage	No

Genome content
Genome length	37,047 bps
GC content	33.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	89.40%
Average CDS length	627.85 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143800_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0143800_1	PHROG	phrog_9611	endolysin	lysis
UHGV-0143800_1	UniRef90	UniRef90_A0A352SK06	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0143800_1	eggNOG-mapper	1042156.CXIVA_01560	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0143800_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0143800_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0143800_1	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0143800_2	PHROG	phrog_199	holin	lysis
UHGV-0143800_2	UniRef90	UniRef90_UPI000E4FBD87	phage holin family protein	NA
UHGV-0143800_2	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-0143800_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0143800_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0143800_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0143800_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0143800_4	KOfam	K10280	FBXL14; F-box and leucine-rich repeat protein 14	NA
UHGV-0143800_4	PHROG	phrog_35892	NA	unknown function
UHGV-0143800_4	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0143800_4	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0143800_4	Structural annotation	PF13306, PF10651, NF033188	NA	NA
UHGV-0143800_5	PHROG	phrog_6616	tail protein	tail
UHGV-0143800_5	UniRef90	UniRef90_A0A0J1FXD9	Peptidase S74 domain-containing protein	NA
UHGV-0143800_5	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0143800_5	COG	COG4926	Phage-related protein	NA
UHGV-0143800_5	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0143800_6	PHROG	phrog_1194	NA	unknown function
UHGV-0143800_6	UniRef90	UniRef90_R5Z572	Putative phage protein	NA
UHGV-0143800_6	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0143800_6	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0143800_7	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0143800_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0143800_7	UniRef90	UniRef90_A0A173W8C4	Chromosome segregation protein	NA
UHGV-0143800_7	eggNOG-mapper	397290.C810_01419	Transglycosylase SLT domain	NA
UHGV-0143800_7	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0143800_9	Structural annotation	PF11836	NA	NA
UHGV-0143800_10	PHROG	phrog_158	major tail protein	tail
UHGV-0143800_10	UniRef90	UniRef90_R5YR40	Major tail protein putative	NA
UHGV-0143800_10	eggNOG-mapper	1209989.TepiRe1_1157	Phage tail tube protein, TTP	NA
UHGV-0143800_10	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0143800_11	eggNOG-mapper	268407.PWYN_03005	NA	NA
UHGV-0143800_11	Structural annotation	PF05657	NA	NA
UHGV-0143800_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0143800_12	UniRef90	UniRef90_R5ZK28	HK97 gp10 family phage protein	NA
UHGV-0143800_12	eggNOG-mapper	1280692.AUJL01000025_gene2076	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0143800_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0143800_12	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0143800_12	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0143800_13	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0143800_14	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0143800_14	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0143800_14	Structural annotation	PF05135	NA	NA
UHGV-0143800_16	PHROG	phrog_267	major head protein	head and packaging
UHGV-0143800_16	UniRef90	UniRef90_A0A6N2YA79	P22 coat protein - gene protein 5	NA
UHGV-0143800_16	eggNOG-mapper	1235800.C819_00485	P22 coat protein-protein 5 domain protein	NA
UHGV-0143800_16	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0143800_16	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0143800_17	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0143800_17	UniRef90	UniRef90_UPI000F53BD28	NA	NA
UHGV-0143800_17	eggNOG-mapper	1504823.CCMM01000008_gene1042	NA	NA
UHGV-0143800_17	Pfam	PF14265	NA	DUF4355
UHGV-0143800_17	Structural annotation	PF14265	NA	NA
UHGV-0143800_19	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0143800_19	UniRef90	UniRef90_R5YXK3	Phage head morphogenesis protein SPP1 gp7 family	NA
UHGV-0143800_19	eggNOG-mapper	1158607.UAU_01754	Phage Mu protein F like protein	NA
UHGV-0143800_19	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0143800_19	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0143800_19	COG	COG2369	NA	NA
UHGV-0143800_19	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0143800_20	PHROG	phrog_64	portal protein	head and packaging
UHGV-0143800_20	UniRef90	UniRef90_R5YR52	Phage portal protein SPP1 family	NA
UHGV-0143800_20	eggNOG-mapper	877414.ATWA01000001_gene907	Phage portal protein, SPP1 family	NA
UHGV-0143800_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0143800_20	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0143800_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0143800_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0143800_21	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0143800_21	UniRef90	UniRef90_A0A173W6A0	Phage terminase, large subunit, PBSX family	NA
UHGV-0143800_21	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0143800_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0143800_21	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0143800_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0143800_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0143800_21	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0143800_22	PHROG	phrog_2412	NA	unknown function
UHGV-0143800_22	UniRef90	UniRef90_UPI001C38E948	KGG domain-containing protein	NA
UHGV-0143800_22	eggNOG-mapper	563192.HMPREF0179_00168	NA	NA
UHGV-0143800_25	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0143800_25	UniRef90	UniRef90_R5YPA6	ParB-like protein	NA
UHGV-0143800_25	eggNOG-mapper	1232449.BAHV02000018_gene1534	NA	NA
UHGV-0143800_25	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0143800_25	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0143800_25	Pfam	PF14386	NA	DUF4417
UHGV-0143800_25	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0143800_25	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0143800_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0143800_26	UniRef90	UniRef90_UPI001CD33068	NA	NA
UHGV-0143800_26	eggNOG-mapper	1408303.JNJJ01000049_gene2728	NA	NA
UHGV-0143800_26	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0143800_26	Structural annotation	PF07374, TIGR01636, COG1342	NA	NA
UHGV-0143800_27	UniRef90	UniRef90_A0A373LPL3	Chemotaxis protein	NA
UHGV-0143800_27	eggNOG-mapper	1042156.CXIVA_01870	NA	NA
UHGV-0143800_27	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0143800_28	UniRef90	UniRef90_A0A373LPL3	Chemotaxis protein	NA
UHGV-0143800_28	eggNOG-mapper	1042156.CXIVA_01870	NA	NA
UHGV-0143800_28	Structural annotation	NF008671, COG4710	NA	NA
UHGV-0143800_30	PHROG	phrog_17690	NA	unknown function
UHGV-0143800_30	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0143800_30	eggNOG-mapper	33035.JPJF01000123_gene2433	NA	NA
UHGV-0143800_32	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0143800_32	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0143800_32	UniRef90	UniRef90_UPI000E475660	SNF2-related protein	NA
UHGV-0143800_32	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0143800_32	PADLOC	MTase_II_00085	Type II methyltransferase	RM
UHGV-0143800_32	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0143800_32	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0143800_32	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0143800_32	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0143800_33	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0143800_33	UniRef90	UniRef90_R7CC66	NUMOD4 domain-containing protein	NA
UHGV-0143800_33	eggNOG-mapper	1410650.JHWL01000037_gene604	NA	NA
UHGV-0143800_33	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0143800_33	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0143800_34	Structural annotation	PF20531	NA	NA
UHGV-0143800_35	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0143800_35	UniRef90	UniRef90_R5ZK48	NA	NA
UHGV-0143800_35	eggNOG-mapper	97138.C820_00626	NA	NA
UHGV-0143800_35	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0143800_35	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0143800_35	Structural annotation	PF14297	NA	NA
UHGV-0143800_36	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0143800_36	eggNOG-mapper	1280692.AUJL01000044_gene2344	NA	NA
UHGV-0143800_36	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0143800_37	Structural annotation	PF21715, COG1654	NA	NA
UHGV-0143800_38	PHROG	phrog_7566	NA	unknown function
UHGV-0143800_38	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0143800_39	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0143800_39	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0143800_39	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0143800_40	PHROG	phrog_14970	NA	unknown function
UHGV-0143800_40	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0143800_40	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0143800_40	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0143800_41	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0143800_41	PHROG	phrog_5889	NA	unknown function
UHGV-0143800_41	UniRef90	UniRef90_R5YPB8	HDc domain-containing protein	NA
UHGV-0143800_41	eggNOG-mapper	272562.CA_C1938	PFAM HD domain	NA
UHGV-0143800_41	Pfam	PF01966	HD domain	HD
UHGV-0143800_41	NCBIFam	TIGR00277.1	HDIG domain-containing protein	NA
UHGV-0143800_41	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0143800_41	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-0143800_44	PHROG	phrog_582	Arc-like repressor	transcription regulation
UHGV-0143800_44	UniRef90	UniRef90_A0A413RZW5	Toxin-antitoxin system HicB family antitoxin	NA
UHGV-0143800_44	Pfam	PF05534	HicB family	HicB
UHGV-0143800_44	NCBIFam	NF041551.1	YlcI/YnfO family protein	NA
UHGV-0143800_44	Structural annotation	PF12441, NF041793, COG3905	NA	NA
UHGV-0143800_45	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0143800_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0143800_45	UniRef90	UniRef90_R5YR82	DNA-binding helix-turn-helix protein	NA
UHGV-0143800_45	eggNOG-mapper	411490.ANACAC_00814	Helix-turn-helix XRE-family like proteins	NA
UHGV-0143800_45	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0143800_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143800_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0143800_45	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0143800_47	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0143800_47	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0143800_47	UniRef90	UniRef90_R5ZK71	Putative repressor LexA	NA
UHGV-0143800_47	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0143800_47	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0143800_47	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0143800_47	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0143800_47	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0143800_48	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0143800_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0143800_48	UniRef90	UniRef90_R6P5B8	DNA-binding helix-turn-helix protein	NA
UHGV-0143800_48	eggNOG-mapper	903814.ELI_3181	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0143800_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143800_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0143800_48	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0143800_49	PHROG	phrog_17771	NA	unknown function
UHGV-0143800_49	UniRef90	UniRef90_E4Q765	Putative Lj965 prophage protein	NA
UHGV-0143800_49	eggNOG-mapper	632292.Calhy_0844	NA	NA
UHGV-0143800_50	PHROG	phrog_5059	NA	unknown function
UHGV-0143800_50	UniRef90	UniRef90_A0A7X5EGP0	NA	NA
UHGV-0143800_50	eggNOG-mapper	717606.PaecuDRAFT_2356	NA	NA
UHGV-0143800_50	Pfam	PF08861	NA	DUF1828
UHGV-0143800_50	Pfam	PF08862	NA	DUF1829
UHGV-0143800_50	Structural annotation	PF08862, PF08861, MF_00722, COG3372	NA	NA
UHGV-0143800_51	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0143800_51	PHROG	phrog_95	integrase	integration and excision
UHGV-0143800_51	UniRef90	UniRef90_R5YR86	Site-specific recombinase	NA
UHGV-0143800_51	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-0143800_51	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0143800_51	Pfam	PF07508	Recombinase	Recombinase
UHGV-0143800_51	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0143800_51	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0143800_51	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0143800_52	KOfam	K06334	cotJC; spore coat protein JC	NA
UHGV-0143800_52	PHROG	phrog_7573	NA	unknown function
UHGV-0143800_52	UniRef90	UniRef90_R5Z5B9	Manganese containing catalase	NA
UHGV-0143800_52	eggNOG-mapper	585394.RHOM_06825	PFAM Manganese containing catalase	NA
UHGV-0143800_52	Pfam	PF05067	Manganese containing catalase	Mn_catalase
UHGV-0143800_52	COG	COG3546	Mn-containing catalase (includes spore coat protein CotJC)	NA
UHGV-0143800_52	Structural annotation	PF05067, MF_00931, TIGR04535, COG3546	NA	NA
UHGV-0143800_53	UniRef90	UniRef90_R5ZK76	Putative carbohydrate binding domain protein	NA
UHGV-0143800_53	eggNOG-mapper	397290.C810_04881	GBS Bsp-like repeat	NA
UHGV-0143800_53	COG	COG3942	Surface antigen	NA