UHGV-0143812

Genome information

Genome length 34,753 bps

CDS count 53

Completeness 98.69% (high-quality)

geNomad score 0.9738

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143812
vOTU ID	vOTU-014455
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_430536
BioSample	SAMN05545028
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.69% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9738
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.7
Jumbo phage	No

Genome content
Genome length	34,753 bps
GC content	48.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	89.53%
Average CDS length	590.89 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143812_1	PHROG	phrog_1762	NA	unknown function
UHGV-0143812_1	UniRef90	UniRef90_A0A3A6JY38	NA	NA
UHGV-0143812_1	eggNOG-mapper	1391646.AVSU01000063_gene3373	NA	NA
UHGV-0143812_1	Pfam	PF11185	NA	DUF2971
UHGV-0143812_1	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0143812_3	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0143812_3	PHROG	phrog_2649	endolysin	lysis
UHGV-0143812_3	UniRef90	UniRef90_A0A1I0GLR6	Peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	NA
UHGV-0143812_3	eggNOG-mapper	742733.HMPREF9469_01368	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0143812_3	AcrCatalog	cluster_9940	NA	NA
UHGV-0143812_3	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0143812_3	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0143812_3	Structural annotation	PF02557, PF19127, MF_01924, NF007557, TIGR04035, COG2173	NA	NA
UHGV-0143812_4	PHROG	phrog_199	holin	lysis
UHGV-0143812_4	UniRef90	UniRef90_A0A2T3F3A5	Holin	NA
UHGV-0143812_4	eggNOG-mapper	742740.HMPREF9474_04290	Bacteriophage holin family	NA
UHGV-0143812_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0143812_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0143812_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0143812_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0143812_5	UniRef90	UniRef90_A0A2T3F842	XkdX family protein	NA
UHGV-0143812_5	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0143812_5	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0143812_6	eggNOG-mapper	742733.HMPREF9469_01800	NA	NA
UHGV-0143812_7	UniRef90	UniRef90_A0A2T3EZJ9	BppU_N domain-containing protein (Fragment)	NA
UHGV-0143812_7	eggNOG-mapper	610130.Closa_0759	NA	NA
UHGV-0143812_9	PHROG	phrog_7854	endolysin	lysis
UHGV-0143812_9	UniRef90	UniRef90_A0A2S6HQG5	Putative cell wall binding repeat protein	NA
UHGV-0143812_9	eggNOG-mapper	1304866.K413DRAFT_4757	cell wall binding	NA
UHGV-0143812_9	Pfam	PF19085	Choline-binding repeat	Choline_bind_2
UHGV-0143812_10	PHROG	phrog_3558	tail protein	tail
UHGV-0143812_10	UniRef90	UniRef90_A0A2T3EZH1	Prophage_tail domain-containing protein	NA
UHGV-0143812_10	eggNOG-mapper	610130.Closa_0754	NA	NA
UHGV-0143812_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0143812_10	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0143812_10	COG	COG4926	Phage-related protein	NA
UHGV-0143812_10	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0143812_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0143812_11	UniRef90	UniRef90_A0A2T3EZG0	MtfA protein	NA
UHGV-0143812_11	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0143812_11	COG	COG4722	Phage-related protein YomH	NA
UHGV-0143812_11	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0143812_12	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0143812_12	UniRef90	UniRef90_A0A2T3EZI8	PhageMin_Tail domain-containing protein	NA
UHGV-0143812_12	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-0143812_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0143812_12	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0143812_12	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0143812_13	PHROG	phrog_706	NA	unknown function
UHGV-0143812_13	UniRef90	UniRef90_UPI001D038340	bacteriophage Gp15 family protein	NA
UHGV-0143812_13	eggNOG-mapper	935836.JAEL01000086_gene44	Bacteriophage Gp15 protein	NA
UHGV-0143812_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0143812_13	Structural annotation	PF06854	NA	NA
UHGV-0143812_14	Structural annotation	PF10666	NA	NA
UHGV-0143812_15	PHROG	phrog_820	major tail protein	tail
UHGV-0143812_15	UniRef90	UniRef90_A0A3R6YSE8	Capsid protein	NA
UHGV-0143812_15	eggNOG-mapper	665959.HMPREF1013_00194	domain, Protein	NA
UHGV-0143812_15	COG	COG5492	NA	NA
UHGV-0143812_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0143812_16	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0143812_16	UniRef90	UniRef90_UPI001D058B7D	minor capsid protein	NA
UHGV-0143812_16	Structural annotation	PF12691	NA	NA
UHGV-0143812_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0143812_17	UniRef90	UniRef90_UPI001D057CDA	minor capsid protein	NA
UHGV-0143812_17	eggNOG-mapper	428125.CLOLEP_00180	Minor capsid protein	NA
UHGV-0143812_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0143812_17	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0143812_18	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0143812_18	UniRef90	UniRef90_UPI001DCE9966	minor capsid protein	NA
UHGV-0143812_18	eggNOG-mapper	1231057.AMGD01000018_gene3616	Minor capsid protein	NA
UHGV-0143812_18	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0143812_18	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0143812_18	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0143812_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0143812_19	UniRef90	UniRef90_R5RS10	Protein gp8	NA
UHGV-0143812_19	eggNOG-mapper	1231057.AMGD01000018_gene3617	NA	NA
UHGV-0143812_20	PHROG	phrog_212	major head protein	head and packaging
UHGV-0143812_20	UniRef90	UniRef90_A0A2T3EZI1	Phage capsid protein	NA
UHGV-0143812_20	eggNOG-mapper	1151292.QEW_2433	NA	NA
UHGV-0143812_20	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0143812_21	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0143812_21	eggNOG-mapper	1280692.AUJL01000027_gene2161	NA	NA
UHGV-0143812_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0143812_23	UniRef90	UniRef90_UPI001D2C4106	phage minor capsid protein	NA
UHGV-0143812_23	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0143812_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0143812_23	COG	COG2369	NA	NA
UHGV-0143812_23	Structural annotation	PF06152	NA	NA
UHGV-0143812_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0143812_24	UniRef90	UniRef90_UPI001D71E5F8	phage portal protein	NA
UHGV-0143812_24	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0143812_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0143812_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0143812_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0143812_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0143812_25	UniRef90	UniRef90_A0A2T3EZG6	PBSX family phage terminase large subunit	NA
UHGV-0143812_25	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-0143812_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0143812_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0143812_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0143812_25	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0143812_26	PHROG	phrog_2412	NA	unknown function
UHGV-0143812_26	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-0143812_26	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0143812_27	PHROG	phrog_30856	NA	unknown function
UHGV-0143812_27	eggNOG-mapper	37659.JNLN01000001_gene2378	NA	NA
UHGV-0143812_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0143812_28	UniRef90	UniRef90_A0A174EB71	FliA/WhiG subfamily RNA polymerase sigma-28 subunit	NA
UHGV-0143812_28	eggNOG-mapper	1123075.AUDP01000020_gene1515	sigma factor activity	NA
UHGV-0143812_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0143812_28	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0143812_33	UniRef90	UniRef90_UPI001D072F7E	NA	NA
UHGV-0143812_33	eggNOG-mapper	1232453.BAIF02000057_gene1153	NA	NA
UHGV-0143812_33	Pfam	PF04448	NA	DUF551
UHGV-0143812_37	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0143812_37	PHROG	phrog_15982	NA	unknown function
UHGV-0143812_37	UniRef90	UniRef90_A0A2T3FG76	ParB domain-containing protein	NA
UHGV-0143812_37	eggNOG-mapper	641107.CDLVIII_1319	ParB-like nuclease domain	NA
UHGV-0143812_37	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0143812_37	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0143812_37	Structural annotation	PF02195, PF07506, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0143812_38	PHROG	phrog_7566	NA	unknown function
UHGV-0143812_38	UniRef90	UniRef90_A0A373CFM5	ClpX-type ZB domain-containing protein	NA
UHGV-0143812_38	eggNOG-mapper	1304866.K413DRAFT_3017	NA	NA
UHGV-0143812_39	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0143812_39	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0143812_39	UniRef90	UniRef90_A0A2T3FFB7	ParA family protein	NA
UHGV-0143812_39	eggNOG-mapper	610130.Closa_0717	AAA domain	NA
UHGV-0143812_39	Pfam	PF13614	AAA domain	AAA_31
UHGV-0143812_39	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0143812_39	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0143812_43	eggNOG-mapper	756499.Desde_3212	NA	NA
UHGV-0143812_48	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0143812_48	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0143812_48	UniRef90	UniRef90_A0A2T3FF88	HTH cro/C1-type domain-containing protein	NA
UHGV-0143812_48	eggNOG-mapper	1235792.C808_00647	Helix-turn-helix XRE-family like proteins	NA
UHGV-0143812_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143812_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0143812_48	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0143812_51	eggNOG-mapper	1121115.AXVN01000002_gene1449	Metallo-beta-lactamase superfamily	NA
UHGV-0143812_51	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0143812_52	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0143812_52	PHROG	phrog_95	integrase	integration and excision
UHGV-0143812_52	UniRef90	UniRef90_UPI0013F61400	recombinase family protein	NA
UHGV-0143812_52	eggNOG-mapper	1304866.K413DRAFT_0761	Recombinase	NA
UHGV-0143812_52	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0143812_52	Pfam	PF07508	Recombinase	Recombinase
UHGV-0143812_52	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0143812_52	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0143812_52	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0143812_53	KOfam	K06306	yaaH; spore germination protein	NA
UHGV-0143812_53	PHROG	phrog_35905	NA	unknown function
UHGV-0143812_53	UniRef90	UniRef90_C0D1I6	LysM domain protein	NA
UHGV-0143812_53	eggNOG-mapper	411902.CLOBOL_06105	PFAM glycoside hydrolase family 18	NA
UHGV-0143812_53	Pfam	PF01476	LysM domain	LysM
UHGV-0143812_53	Pfam	PF00704	Glycosyl hydrolases family 18	Glyco_hydro_18
UHGV-0143812_53	COG	COG3858	Spore cortex hydrolase SleL/YaaH, N-acetylglucosaminidase of GH18 family	NA