UHGV-0143848

Genome information

Genome length 65,230 bps

CDS count 81

Completeness 100.00% (complete)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143848
vOTU ID	vOTU-046070
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_415171
BioSample	SAMN05414924
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	1.5
Jumbo phage	No

Genome content
Genome length	65,230 bps
GC content	48.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	81
CDS density	91.91%
Average CDS length	742.74 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143848_1	PHROG	phrog_14770	NA	unknown function
UHGV-0143848_1	eggNOG-mapper	679191.HMPREF9018_0456	helicase superfamily c-terminal domain	NA
UHGV-0143848_1	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0143848_1	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0143848_1	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0143848_2	PHROG	phrog_156	portal protein	head and packaging
UHGV-0143848_2	eggNOG-mapper	1227276.HMPREF9148_00164	NA	NA
UHGV-0143848_2	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0143848_3	PHROG	phrog_22658	NA	unknown function
UHGV-0143848_4	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0143848_4	UniRef90	UniRef90_A0A2V2D167	Terminase	NA
UHGV-0143848_4	eggNOG-mapper	1227276.HMPREF9148_00162	Mu-like prophage FluMu protein gp28	NA
UHGV-0143848_4	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0143848_4	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0143848_5	UniRef90	UniRef90_UPI000E4B5E96	rhomboid family intramembrane serine protease	NA
UHGV-0143848_5	eggNOG-mapper	1121098.HMPREF1534_01123	Rhomboid family	NA
UHGV-0143848_5	Structural annotation	PF01694, MF_01594, TIGR04239, COG0705	NA	NA
UHGV-0143848_6	PHROG	phrog_27246	NA	unknown function
UHGV-0143848_6	eggNOG-mapper	563031.HMPREF0666_01149	NA	NA
UHGV-0143848_7	PHROG	phrog_22323	NA	unknown function
UHGV-0143848_7	eggNOG-mapper	1227276.HMPREF9148_00160	NA	NA
UHGV-0143848_8	PHROG	phrog_26635	NA	unknown function
UHGV-0143848_8	UniRef90	UniRef90_UPI001C38231A	NA	NA
UHGV-0143848_8	eggNOG-mapper	1121098.HMPREF1534_01120	NA	NA
UHGV-0143848_8	Structural annotation	PF17236, MF_04133, TIGR01554, COG4834	NA	NA
UHGV-0143848_9	PHROG	phrog_23743	NA	unknown function
UHGV-0143848_9	eggNOG-mapper	679191.HMPREF9018_0451	NA	NA
UHGV-0143848_10	PHROG	phrog_22135	NA	unknown function
UHGV-0143848_10	eggNOG-mapper	1347393.HG726020_gene1827	NA	NA
UHGV-0143848_10	Structural annotation	PF17212	NA	NA
UHGV-0143848_15	UniRef90	UniRef90_UPI001F16170A	phage holin family protein	NA
UHGV-0143848_15	eggNOG-mapper	1121097.JCM15093_2703	NA	NA
UHGV-0143848_15	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0143848_15	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0143848_16	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0143848_16	PHROG	phrog_894	endolysin	lysis
UHGV-0143848_16	UniRef90	UniRef90_A0A0I9SAU9	Peptidase M15	NA
UHGV-0143848_16	eggNOG-mapper	449673.BACSTE_00851	Peptidase M15	NA
UHGV-0143848_16	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0143848_16	COG	COG3108	NA	NA
UHGV-0143848_16	Structural annotation	PF08291, COG3108	NA	NA
UHGV-0143848_17	eggNOG-mapper	1347393.HG726021_gene391	NA	NA
UHGV-0143848_17	Structural annotation	PF02107	NA	NA
UHGV-0143848_18	UniRef90	UniRef90_A0A8D9UI10	Chromosomal replication initiator protein	NA
UHGV-0143848_18	eggNOG-mapper	762968.HMPREF9441_00556	Bacterial dnaA protein helix-turn-helix	NA
UHGV-0143848_22	Structural annotation	PF10628	NA	NA
UHGV-0143848_24	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0143848_24	PHROG	phrog_1	integrase	integration and excision
UHGV-0143848_24	UniRef90	UniRef90_A0A174W4W2	Site-specific recombinase XerD	NA
UHGV-0143848_24	eggNOG-mapper	1433126.BN938_1066	Belongs to the 'phage' integrase family	NA
UHGV-0143848_24	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0143848_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0143848_24	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0143848_24	Structural annotation	PF00589, MF_01808, NF002331, COG4974	NA	NA
UHGV-0143848_25	PHROG	phrog_32516	NA	unknown function
UHGV-0143848_25	eggNOG-mapper	1227276.HMPREF9148_00144	NA	NA
UHGV-0143848_25	Structural annotation	PF11134, COG2706	NA	NA
UHGV-0143848_27	PHROG	phrog_30264	NA	unknown function
UHGV-0143848_27	eggNOG-mapper	679191.HMPREF9018_0438	NA	NA
UHGV-0143848_28	PHROG	phrog_30965	NA	unknown function
UHGV-0143848_28	UniRef90	UniRef90_R7IZL2	Conserved domain protein	NA
UHGV-0143848_28	eggNOG-mapper	679191.HMPREF9018_0437	NA	NA
UHGV-0143848_28	Structural annotation	NF010236	NA	NA
UHGV-0143848_30	KOfam	K07486	K07486; transposase	NA
UHGV-0143848_30	PHROG	phrog_2199	transposase	integration and excision
UHGV-0143848_30	UniRef90	UniRef90_A0A316S1E7	IS110 family transposase	NA
UHGV-0143848_30	eggNOG-mapper	411476.BACOVA_01702	COG COG3547 Transposase and inactivated derivatives	NA
UHGV-0143848_30	Pfam	PF01548	Transposase	DEDD_Tnp_IS110
UHGV-0143848_30	Pfam	PF02371	Transposase IS116/IS110/IS902 family	Transposase_20
UHGV-0143848_30	NCBIFam	NF033542.1	IS110 family transposase	NA
UHGV-0143848_30	COG	COG3547	Transposase	NA
UHGV-0143848_30	Structural annotation	PF01548, PF02371, NF033542, COG3547	NA	NA
UHGV-0143848_32	KOfam	K01771	plc; 1-phosphatidylinositol phosphodiesterase [EC:4.6.1.13]	NA
UHGV-0143848_32	UniRef90	UniRef90_W1I599	Uncultured bacterium extrachromosomal DNA RGI02304	NA
UHGV-0143848_32	eggNOG-mapper	547042.BACCOPRO_02710	NA	NA
UHGV-0143848_32	Structural annotation	PF16670	NA	NA
UHGV-0143848_33	eggNOG-mapper	742727.HMPREF9447_04872	radical SAM domain protein	NA
UHGV-0143848_33	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0143848_34	Structural annotation	PF00684, TIGR00663, COG0592	NA	NA
UHGV-0143848_38	PHROG	phrog_11581	NA	unknown function
UHGV-0143848_38	eggNOG-mapper	1121100.JCM6294_1067	NA	NA
UHGV-0143848_40	KOfam	K01771	plc; 1-phosphatidylinositol phosphodiesterase [EC:4.6.1.13]	NA
UHGV-0143848_40	UniRef90	UniRef90_W1I599	Uncultured bacterium extrachromosomal DNA RGI02304	NA
UHGV-0143848_40	eggNOG-mapper	547042.BACCOPRO_02710	NA	NA
UHGV-0143848_40	Structural annotation	PF16670	NA	NA
UHGV-0143848_41	eggNOG-mapper	742727.HMPREF9447_04872	radical SAM domain protein	NA
UHGV-0143848_41	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0143848_42	Structural annotation	PF00684, TIGR00663, COG0592	NA	NA
UHGV-0143848_46	PHROG	phrog_11581	NA	unknown function
UHGV-0143848_46	eggNOG-mapper	1121100.JCM6294_1067	NA	NA
UHGV-0143848_48	PHROG	phrog_2776	NA	unknown function
UHGV-0143848_48	UniRef90	UniRef90_UPI001297AEBA	MmcB family DNA repair protein	NA
UHGV-0143848_48	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0143848_49	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0143848_49	UniRef90	UniRef90_A0A4U1G064	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0143848_49	eggNOG-mapper	1123301.KB904188_gene1122	cytosine-specific methyltransferase	NA
UHGV-0143848_49	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0143848_49	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0143848_49	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0143848_50	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0143848_50	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0143848_50	UniRef90	UniRef90_UPI00068F0FBE	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0143848_50	eggNOG-mapper	1033733.CAEK01000007_gene1648	Cytosine-specific methyltransferase	NA
UHGV-0143848_50	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0143848_50	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0143848_50	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0143848_50	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0143848_50	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0143848_53	Structural annotation	PF19962, NF041007	NA	NA
UHGV-0143848_54	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0143848_54	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0143848_54	UniRef90	UniRef90_A0A096AUD9	DNA helicase	NA
UHGV-0143848_54	eggNOG-mapper	742766.HMPREF9455_01845	Participates in initiation and elongation during chromosome replication	NA
UHGV-0143848_54	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0143848_54	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0143848_54	COG	COG0305	Replicative DNA helicase	NA
UHGV-0143848_54	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0143848_55	PHROG	phrog_15768	NA	unknown function
UHGV-0143848_55	eggNOG-mapper	762968.HMPREF9441_00534	NA	NA
UHGV-0143848_55	Pfam	PF19808	NA	DUF6291
UHGV-0143848_55	Structural annotation	PF19808	NA	NA
UHGV-0143848_57	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0143848_57	eggNOG-mapper	1122971.BAME01000006_gene913	NA	NA
UHGV-0143848_57	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0143848_58	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0143848_58	eggNOG-mapper	1121100.JCM6294_522	NA	NA
UHGV-0143848_58	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0143848_59	UniRef90	UniRef90_F3QQV6	Conserved domain protein	NA
UHGV-0143848_59	eggNOG-mapper	762982.HMPREF9442_00549	NA	NA
UHGV-0143848_60	PHROG	phrog_6244	NA	unknown function
UHGV-0143848_60	UniRef90	UniRef90_UPI0019604DB6	PD-(D/E)XK nuclease family protein	NA
UHGV-0143848_60	eggNOG-mapper	762982.HMPREF9442_00550	NA	NA
UHGV-0143848_60	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0143848_61	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0143848_61	UniRef90	UniRef90_UPI00147348AC	ERF family protein	NA
UHGV-0143848_61	eggNOG-mapper	10754.ERF_BPP22	ERF superfamily	NA
UHGV-0143848_61	Pfam	PF04404	ERF superfamily	ERF
UHGV-0143848_61	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0143848_65	UniRef90	UniRef90_UPI0008A364E9	helix-turn-helix domain-containing protein	NA
UHGV-0143848_65	eggNOG-mapper	1408303.JNJJ01000139_gene1765	Helix-turn-helix domain	NA
UHGV-0143848_65	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0143848_65	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0143848_65	Structural annotation	PF12728, MF_01155, NF033787, COG3311	NA	NA
UHGV-0143848_67	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0143848_67	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0143848_73	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0143848_73	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0143848_73	UniRef90	UniRef90_A0A1E9BE71	DNA repair protein	NA
UHGV-0143848_73	eggNOG-mapper	997884.HMPREF1068_03266	NA	NA
UHGV-0143848_73	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0143848_73	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0143848_73	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0143848_74	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0143848_74	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0143848_74	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143848_74	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0143848_76	PHROG	phrog_19255	NA	unknown function
UHGV-0143848_76	eggNOG-mapper	1121098.HMPREF1534_01102	NA	NA
UHGV-0143848_79	eggNOG-mapper	1347393.HG726020_gene1836	NA	NA
UHGV-0143848_81	PHROG	phrog_14770	NA	unknown function
UHGV-0143848_81	eggNOG-mapper	563031.HMPREF0666_01152	Helicase C-terminal domain protein	NA
UHGV-0143848_81	COG	COG0249	DNA mismatch repair ATPase MutS	NA