UHGV-0143857

Genome information

Genome length 35,529 bps

CDS count 56

Completeness 100.00% (complete)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143857
vOTU ID	vOTU-046071
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_411713
BioSample	NA
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.72
Jumbo phage	No

Genome content
Genome length	35,529 bps
GC content	59.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	91.83%
Average CDS length	585.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143857_1	PHROG	phrog_24451	NA	unknown function
UHGV-0143857_1	eggNOG-mapper	1408437.JNJN01000040_gene189	NA	NA
UHGV-0143857_3	PHROG	phrog_4105	NA	unknown function
UHGV-0143857_3	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0143857_3	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-0143857_4	PHROG	phrog_1129	holin	lysis
UHGV-0143857_4	UniRef90	UniRef90_A0A1Q6RI18	Enolase	NA
UHGV-0143857_4	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0143857_4	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0143857_4	Structural annotation	PF06946	NA	NA
UHGV-0143857_5	PHROG	phrog_435	endolysin	lysis
UHGV-0143857_5	UniRef90	UniRef90_A0A8D9PDS4	Cell wall hydrolase/autolysin	NA
UHGV-0143857_5	eggNOG-mapper	1226322.HMPREF1545_01953	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0143857_5	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0143857_5	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0143857_7	PHROG	phrog_25567	NA	unknown function
UHGV-0143857_7	UniRef90	UniRef90_UPI00164AED9E	helix-turn-helix domain-containing protein	NA
UHGV-0143857_7	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0143857_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143857_7	Structural annotation	NF040522, COG2944	NA	NA
UHGV-0143857_8	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA
UHGV-0143857_9	KOfam	K14059	int; integrase	NA
UHGV-0143857_9	PHROG	phrog_1	integrase	integration and excision
UHGV-0143857_9	UniRef90	UniRef90_UPI001EDEB0AD	site-specific integrase	NA
UHGV-0143857_9	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0143857_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0143857_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0143857_9	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0143857_10	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0143857_12	eggNOG-mapper	1226325.HMPREF1548_05412	Peptidoglycan-binding domain 1 protein	NA
UHGV-0143857_12	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0143857_13	UniRef90	UniRef90_A0A1Y3ZTC9	HTH cro/C1-type domain-containing protein	NA
UHGV-0143857_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143857_13	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0143857_13	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0143857_17	Structural annotation	PF14947, NF041230, COG3432	NA	NA
UHGV-0143857_18	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0143857_18	UniRef90	UniRef90_A0A1C5PF11	HTH cro/C1-type domain-containing protein	NA
UHGV-0143857_18	eggNOG-mapper	1226322.HMPREF1545_02466	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0143857_18	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0143857_19	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0143857_19	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0143857_19	UniRef90	UniRef90_UPI000F0D19B9	helix-turn-helix domain-containing protein	NA
UHGV-0143857_19	eggNOG-mapper	445975.COLSTE_01137	Peptidase S24-like	NA
UHGV-0143857_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143857_19	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0143857_19	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0143857_21	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0143857_21	UniRef90	UniRef90_G9YL68	DNA-binding helix-turn-helix protein	NA
UHGV-0143857_21	eggNOG-mapper	742738.HMPREF9460_00847	Helix-turn-helix XRE-family like proteins	NA
UHGV-0143857_21	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0143857_21	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0143857_21	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0143857_23	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0143857_23	UniRef90	UniRef90_UPI00195D2180	helix-turn-helix domain-containing protein	NA
UHGV-0143857_23	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0143857_23	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0143857_23	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0143857_23	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0143857_24	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0143857_24	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0143857_24	UniRef90	UniRef90_A0A1Y3RP11	DNA helicase	NA
UHGV-0143857_24	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0143857_24	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0143857_24	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0143857_24	COG	COG0305	Replicative DNA helicase	NA
UHGV-0143857_24	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0143857_25	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0143857_25	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0143857_25	UniRef90	UniRef90_UPI000318E277	ParA family protein	NA
UHGV-0143857_25	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0143857_25	Pfam	PF13614	AAA domain	AAA_31
UHGV-0143857_25	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0143857_25	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0143857_26	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0143857_26	PHROG	phrog_27290	NA	unknown function
UHGV-0143857_26	UniRef90	UniRef90_UPI0003130F10	ParB N-terminal domain-containing protein	NA
UHGV-0143857_26	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0143857_26	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0143857_26	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0143857_26	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0143857_35	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0143857_35	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0143857_35	Structural annotation	PF21578	NA	NA
UHGV-0143857_36	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-0143857_36	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0143857_36	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0143857_36	Structural annotation	PF14205	NA	NA
UHGV-0143857_37	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0143857_37	UniRef90	UniRef90_G9YSB5	HNH domain-containing protein	NA
UHGV-0143857_37	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-0143857_37	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0143857_37	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0143857_38	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0143857_38	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0143857_38	UniRef90	UniRef90_A0A810PZK9	ParB domain-containing protein	NA
UHGV-0143857_38	eggNOG-mapper	173707.Q938L7_9CAUD	helicase activity	NA
UHGV-0143857_38	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0143857_38	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0143857_38	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0143857_39	UniRef90	UniRef90_A0A1V6DKY6	Radical SAM superfamily protein	NA
UHGV-0143857_39	eggNOG-mapper	397288.C806_02405	Elongator protein 3, MiaB family, Radical SAM	NA
UHGV-0143857_39	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0143857_39	Structural annotation	PF02310, MF_01864, TIGR03960, COG1032	NA	NA
UHGV-0143857_40	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0143857_40	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA
UHGV-0143857_40	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0143857_40	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0143857_41	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0143857_41	UniRef90	UniRef90_UPI0018737C02	terminase large subunit	NA
UHGV-0143857_41	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0143857_41	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0143857_41	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0143857_41	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0143857_41	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0143857_42	PHROG	phrog_12	portal protein	head and packaging
UHGV-0143857_42	UniRef90	UniRef90_UPI0018755FA4	phage portal protein	NA
UHGV-0143857_42	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-0143857_42	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0143857_42	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0143857_42	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0143857_42	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0143857_43	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0143857_43	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0143857_43	UniRef90	UniRef90_A0A1Y4BT12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0143857_43	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0143857_43	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0143857_43	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0143857_43	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0143857_44	PHROG	phrog_10	major head protein	head and packaging
UHGV-0143857_44	UniRef90	UniRef90_G9YSC0	Cadherin-like domain-containing protein	NA
UHGV-0143857_44	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0143857_44	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0143857_44	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0143857_44	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0143857_44	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0143857_44	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0143857_45	PHROG	phrog_749	NA	unknown function
UHGV-0143857_45	UniRef90	UniRef90_UPI001C0FB8A8	head-tail connector protein	NA
UHGV-0143857_45	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0143857_46	PHROG	phrog_19734	NA	unknown function
UHGV-0143857_46	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0143857_46	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-0143857_46	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0143857_47	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0143857_47	Structural annotation	PF05657	NA	NA
UHGV-0143857_48	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0143857_48	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0143857_48	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0143857_48	Structural annotation	TIGR01725	NA	NA
UHGV-0143857_49	PHROG	phrog_88	major tail protein	tail
UHGV-0143857_49	UniRef90	UniRef90_A0A1C6CIL7	Phage major tail protein, phi13 family	NA
UHGV-0143857_49	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0143857_49	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0143857_49	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0143857_52	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0143857_52	UniRef90	UniRef90_A0A1E3BXP9	Phage tail protein	NA
UHGV-0143857_52	eggNOG-mapper	1216932.CM240_0625	tape measure	NA
UHGV-0143857_52	COG	COG5283	Phage-related tail protein	NA
UHGV-0143857_52	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0143857_53	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0143857_53	UniRef90	UniRef90_A0A2X2UUQ3	Phage putative tail component	NA
UHGV-0143857_53	eggNOG-mapper	994573.T472_0211980	tail component	NA
UHGV-0143857_53	COG	COG4722	Phage-related protein YomH	NA
UHGV-0143857_53	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0143857_54	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0143857_54	UniRef90	UniRef90_A0A316NPB5	Peptidase S74 domain-containing protein	NA
UHGV-0143857_54	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0143857_54	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0143857_54	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0143857_54	COG	COG4926	Phage-related protein	NA
UHGV-0143857_54	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0143857_55	Structural annotation	PF17642	NA	NA
UHGV-0143857_56	eggNOG-mapper	1408437.JNJN01000030_gene1051	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0143857_56	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0143857_56	Structural annotation	PF10651, PF04862, TIGR04362, COG5513	NA	NA