UHGV-0143904

Genome information

Genome length 17,692 bps

CDS count 20

Completeness 100.00% (complete)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143904
vOTU ID	vOTU-046072
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_404061
BioSample	SAMN05414927
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	ITR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.39
Jumbo phage	No

Genome content
Genome length	17,692 bps
GC content	55.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	20
CDS density	95.09%
Average CDS length	842.70 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143904_2	Structural annotation	NF010236	NA	NA
UHGV-0143904_4	Structural annotation	PF17548	NA	NA
UHGV-0143904_5	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0143904_5	eggNOG-mapper	513550.B6RT34_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-0143904_5	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0143904_5	Structural annotation	PF17427	NA	NA
UHGV-0143904_7	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0143904_7	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0143904_7	UniRef90	UniRef90_A0A6G5XWT5	DNA-directed DNA polymerase	NA
UHGV-0143904_7	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0143904_7	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0143904_7	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0143904_9	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0143904_9	UniRef90	UniRef90_A0A6G5YM92	BIG2 domain-containing protein	NA
UHGV-0143904_9	eggNOG-mapper	338473.A6XAD5_9CAUD	viral capsid	NA
UHGV-0143904_9	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0143904_9	Structural annotation	PF02368, PF19821, PF18957, MF_04119, NF033394, COG1659, COG5492	NA	NA
UHGV-0143904_10	PHROG	phrog_2248	tail protein	tail
UHGV-0143904_10	UniRef90	UniRef90_A0A6G5XZQ5	Caud_tail_N domain-containing protein	NA
UHGV-0143904_10	eggNOG-mapper	338473.A6XAD6_9CAUD	NA	NA
UHGV-0143904_10	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0143904_10	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0143904_11	PHROG	phrog_2038	upper collar connector	connector
UHGV-0143904_11	UniRef90	UniRef90_A6XAD7	Upper collar	NA
UHGV-0143904_11	eggNOG-mapper	338473.A6XAD7_9CAUD	Phage Connector (GP10)	NA
UHGV-0143904_11	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0143904_11	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0143904_12	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0143904_12	UniRef90	UniRef90_A0A3G3LYS5	Lower collar protein	NA
UHGV-0143904_12	eggNOG-mapper	338473.A6XAD8_9CAUD	NA	NA
UHGV-0143904_16	UniRef90	UniRef90_A0A6G5XZM2	NlpC/P60 domain-containing protein	NA
UHGV-0143904_16	eggNOG-mapper	33035.JPJF01000023_gene3229	NA	NA
UHGV-0143904_16	Structural annotation	NF008096, COG0791	NA	NA
UHGV-0143904_17	PHROG	phrog_2150	terminase	head and packaging
UHGV-0143904_17	UniRef90	UniRef90_A0A6G6Y0M2	DNA packaging protein	NA
UHGV-0143904_17	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0143904_17	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0143904_17	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0143904_18	PHROG	phrog_199	holin	lysis
UHGV-0143904_18	UniRef90	UniRef90_UPI00123224AD	phage holin family protein	NA
UHGV-0143904_18	eggNOG-mapper	1437610.BREU_1264	Bacteriophage holin family	NA
UHGV-0143904_18	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0143904_18	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0143904_18	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0143904_19	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0143904_19	PHROG	phrog_19265	NA	unknown function
UHGV-0143904_19	UniRef90	UniRef90_B6XSY0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0143904_19	eggNOG-mapper	566552.BIFCAT_00299	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0143904_19	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0143904_19	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0143904_19	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA