UHGV-0143918

Genome information

vOTU vOTU-020659

Genome length 29,968 bps

CDS count 44

Completeness 56.93% (medium-quality)

geNomad score 0.9691

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143918
vOTU ID	vOTU-020659
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_396653
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.93% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9691
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	68.4
Jumbo phage	No

Genome content
Genome length	29,968 bps
GC content	27.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	88.40%
Average CDS length	605.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143918_1	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0143918_1	UniRef90	UniRef90_A0A069AW20	Phage portal protein	NA
UHGV-0143918_1	eggNOG-mapper	272563.CD630_09560	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0143918_1	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0143918_1	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0143918_2	PHROG	phrog_365	tail protein	tail
UHGV-0143918_2	UniRef90	UniRef90_A0A069A9Y0	NA	NA
UHGV-0143918_2	eggNOG-mapper	272563.CD630_09550	Phage tail tube protein	NA
UHGV-0143918_2	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0143918_2	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0143918_3	PHROG	phrog_279	tail sheath	tail
UHGV-0143918_3	UniRef90	UniRef90_X5JAJ1	Putative tail sheath protein	NA
UHGV-0143918_3	eggNOG-mapper	272563.CD630_09540	Phage tail sheath protein beta-sandwich domain	NA
UHGV-0143918_3	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0143918_3	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0143918_3	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0143918_3	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0143918_4	PHROG	phrog_525	NA	unknown function
UHGV-0143918_4	UniRef90	UniRef90_T3D6E7	Putative phage protein	NA
UHGV-0143918_4	eggNOG-mapper	1411095.X5JAB5_9CAUD	NA	NA
UHGV-0143918_4	Pfam	PF20765	NA	DUF6838
UHGV-0143918_4	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0143918_5	PHROG	phrog_28895	NA	unknown function
UHGV-0143918_5	UniRef90	UniRef90_UPI001D10CB64	HK97 gp10 family phage protein	NA
UHGV-0143918_5	eggNOG-mapper	1411095.X5JB35_9CAUD	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0143918_5	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0143918_5	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0143918_6	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0143918_6	UniRef90	UniRef90_T3D9B6	Putative phage protein	NA
UHGV-0143918_6	eggNOG-mapper	272563.CD630_09510	NA	NA
UHGV-0143918_6	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0143918_7	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0143918_7	eggNOG-mapper	272563.CD630_09500	NA	NA
UHGV-0143918_7	Structural annotation	PF05135	NA	NA
UHGV-0143918_8	PHROG	phrog_1378	NA	unknown function
UHGV-0143918_8	UniRef90	UniRef90_T3D7L4	Putative phage domain protein	NA
UHGV-0143918_8	eggNOG-mapper	1582156.A0A0A8WFD0_9CAUD	NA	NA
UHGV-0143918_9	PHROG	phrog_422	major head protein	head and packaging
UHGV-0143918_9	UniRef90	UniRef90_X5J9Z5	Putative major capsid protein	NA
UHGV-0143918_9	eggNOG-mapper	262071.Q6QXB9_9CAUD	NA	NA
UHGV-0143918_9	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0143918_10	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0143918_10	UniRef90	UniRef90_T3DIQ9	Phage minor structural GP20 family protein	NA
UHGV-0143918_10	eggNOG-mapper	1582156.A0A0A8WFU8_9CAUD	viral scaffold	NA
UHGV-0143918_10	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0143918_11	PHROG	phrog_5106	NA	unknown function
UHGV-0143918_12	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0143918_12	UniRef90	UniRef90_A0A450CVW6	Minor head protein	NA
UHGV-0143918_12	eggNOG-mapper	272563.CD630_09460	Phage Mu protein F like protein	NA
UHGV-0143918_12	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0143918_12	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0143918_12	COG	COG2369	NA	NA
UHGV-0143918_13	PHROG	phrog_64	portal protein	head and packaging
UHGV-0143918_13	UniRef90	UniRef90_A0A0A8WFC0	Phage portal protein, SPP1 family	NA
UHGV-0143918_13	eggNOG-mapper	1582156.A0A0A8WFC0_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0143918_13	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0143918_13	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0143918_13	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0143918_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0143918_14	PHROG	phrog_22023	NA	unknown function
UHGV-0143918_14	UniRef90	UniRef90_X5JAB3	Putative phage terminase large subunit	NA
UHGV-0143918_14	eggNOG-mapper	272563.CD630_09440	Phage terminase, large subunit, PBSX family	NA
UHGV-0143918_14	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0143918_14	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0143918_14	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0143918_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-0143918_14	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0143918_15	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0143918_15	UniRef90	UniRef90_UPI000C998F83	phage terminase small subunit	NA
UHGV-0143918_15	eggNOG-mapper	1582156.A0A0A8WFS6_9CAUD	DNA packaging	NA
UHGV-0143918_15	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0143918_15	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0143918_15	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0143918_16	PHROG	phrog_11428	NA	unknown function
UHGV-0143918_16	eggNOG-mapper	1151292.QEW_3263	NA	NA
UHGV-0143918_17	PHROG	phrog_32650	NA	unknown function
UHGV-0143918_17	eggNOG-mapper	518637.EUBIFOR_00095	NA	NA
UHGV-0143918_18	PHROG	phrog_30064	NA	unknown function
UHGV-0143918_18	UniRef90	UniRef90_UPI001AE7ED26	nucleoid-associated protein	NA
UHGV-0143918_18	eggNOG-mapper	518637.EUBIFOR_00096	NA	NA
UHGV-0143918_19	PHROG	phrog_2329	NA	unknown function
UHGV-0143918_19	UniRef90	UniRef90_A0A160XK59	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0143918_19	eggNOG-mapper	469617.FUAG_02549	NA	NA
UHGV-0143918_19	Structural annotation	MF_01193, NF007312, COG2336	NA	NA
UHGV-0143918_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0143918_20	UniRef90	UniRef90_Q0SPJ6	Probable sigma factor	NA
UHGV-0143918_20	eggNOG-mapper	1408823.AXUS01000025_gene2668	sigma factor activity	NA
UHGV-0143918_20	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0143918_20	Structural annotation	PF08281, MF_00674, TIGR01636, COG1595	NA	NA
UHGV-0143918_21	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0143918_21	UniRef90	UniRef90_UPI00189A5C86	NA	NA
UHGV-0143918_21	eggNOG-mapper	1582149.A0A0A8WEP5_9CAUD	NA	NA
UHGV-0143918_21	Pfam	PF06356	NA	DUF1064
UHGV-0143918_21	Structural annotation	PF06356, MF_04160, NF033179, COG2887	NA	NA
UHGV-0143918_22	PHROG	phrog_4531	NA	unknown function
UHGV-0143918_23	PHROG	phrog_6827	NA	unknown function
UHGV-0143918_23	UniRef90	UniRef90_T3D844	Putative phage protein	NA
UHGV-0143918_23	eggNOG-mapper	559189.B6SBY5_9CAUD	NA	NA
UHGV-0143918_24	PHROG	phrog_2961	NA	unknown function
UHGV-0143918_24	eggNOG-mapper	1522092.A0A090DCW0_9CAUD	NA	NA
UHGV-0143918_25	PHROG	phrog_1310	NA	unknown function
UHGV-0143918_25	UniRef90	UniRef90_T3D625	NUMOD1 domain protein	NA
UHGV-0143918_25	eggNOG-mapper	1522092.A0A090D844_9CAUD	NA	NA
UHGV-0143918_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0143918_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0143918_26	UniRef90	UniRef90_A0A1M2Y778	Single-stranded DNA-binding protein	NA
UHGV-0143918_26	eggNOG-mapper	1582149.A0A0A8WIG9_9CAUD	Single-strand binding protein family	NA
UHGV-0143918_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0143918_26	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0143918_26	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0143918_26	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0143918_27	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0143918_27	PHROG	phrog_13390	NA	unknown function
UHGV-0143918_27	UniRef90	UniRef90_A0A6B9J1K6	DnaB_2 domain-containing protein	NA
UHGV-0143918_27	eggNOG-mapper	1582149.A0A0A8WHS7_9CAUD	calcium ion binding	NA
UHGV-0143918_27	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0143918_27	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0143918_27	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0143918_28	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0143918_28	UniRef90	UniRef90_UPI001D0F9219	ERF family protein	NA
UHGV-0143918_28	eggNOG-mapper	1151292.QEW_4381	ERF superfamily	NA
UHGV-0143918_28	Pfam	PF04404	ERF superfamily	ERF
UHGV-0143918_28	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0143918_29	PHROG	phrog_4500	NA	unknown function
UHGV-0143918_30	PHROG	phrog_2219	NA	unknown function
UHGV-0143918_30	UniRef90	UniRef90_A0A0A8WFK1	Putative phage protein	NA
UHGV-0143918_31	PHROG	phrog_2047	NA	unknown function
UHGV-0143918_32	PHROG	phrog_1877	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0143918_32	UniRef90	UniRef90_A0A6B9J201	HTH_17 domain-containing protein	NA
UHGV-0143918_32	eggNOG-mapper	1582156.A0A0A8WFG8_9CAUD	Helix-turn-helix domain	NA
UHGV-0143918_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0143918_33	UniRef90	UniRef90_A0A1R5GQP0	XRE family transcriptional regulator	NA
UHGV-0143918_33	eggNOG-mapper	1151292.QEW_3290	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0143918_33	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0143918_33	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0143918_33	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0143918_34	PHROG	phrog_3240	NA	unknown function
UHGV-0143918_34	eggNOG-mapper	1461246.X2KU02_9VIRU	NA	NA
UHGV-0143918_35	PHROG	phrog_1534	NA	unknown function
UHGV-0143918_36	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0143918_36	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0143918_36	UniRef90	UniRef90_A0A450CHQ0	Anti-repressor	NA
UHGV-0143918_36	eggNOG-mapper	1582149.A0A0A8WIE3_9CAUD	DNA binding	NA
UHGV-0143918_36	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0143918_36	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0143918_36	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0143918_37	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0143918_37	UniRef90	UniRef90_A0A450CHW4	Phage regulatory protein	NA
UHGV-0143918_37	eggNOG-mapper	262071.A3QSE0_9CAUD	DNA binding	NA
UHGV-0143918_37	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0143918_37	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0143918_37	Structural annotation	PF09669, PF03374, TIGR02681, COG3646	NA	NA
UHGV-0143918_38	UniRef90	UniRef90_A0A6B9J406	HTH cro/C1-type domain-containing protein	NA
UHGV-0143918_38	eggNOG-mapper	1582156.A0A0A8WIG0_9CAUD	BetR domain	NA
UHGV-0143918_38	Pfam	PF08667	BetR domain	BetR
UHGV-0143918_38	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0143918_39	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0143918_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0143918_39	UniRef90	UniRef90_A0A1R2DYY0	Phage regulatory protein	NA
UHGV-0143918_39	eggNOG-mapper	1582149.A0A0A8WJ60_9CAUD	protein disulfide oxidoreductase activity	NA
UHGV-0143918_39	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0143918_39	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0143918_39	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0143918_39	NCBIFam	NF041951.1	RstR family transcriptional repressor	NA
UHGV-0143918_40	PHROG	phrog_2598	NA	unknown function
UHGV-0143918_40	UniRef90	UniRef90_UPI0006BBED5D	NA	NA
UHGV-0143918_40	eggNOG-mapper	1173024.KI912148_gene2587	NA	NA
UHGV-0143918_40	Pfam	PF03235	NA	DUF262
UHGV-0143918_40	COG	COG1479	NA	NA
UHGV-0143918_40	Structural annotation	PF14072, TIGR04285, COG1479	NA	NA
UHGV-0143918_41	PHROG	phrog_22325	NA	unknown function
UHGV-0143918_41	UniRef90	UniRef90_UPI0006BBF798	MAE_28990/MAE_18760 family HEPN-like nuclease	NA
UHGV-0143918_41	eggNOG-mapper	1173024.KI912148_gene2588	NA	NA
UHGV-0143918_41	Pfam	PF18735	RiboL-PSP-HEPN	HEPN_RiboL-PSP
UHGV-0143918_42	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0143918_42	PHROG	phrog_1600	DNA methyltransferase	other
UHGV-0143918_42	UniRef90	UniRef90_UPI000D1E8496	Eco57I restriction-modification methylase domain-containing protein	NA
UHGV-0143918_42	eggNOG-mapper	1095770.CAHE01000059_gene1555	Eco57I restriction-modification methylase	NA
UHGV-0143918_42	PADLOC	MTase_II_00013	Type II methyltransferase	RM
UHGV-0143918_42	Pfam	PF07669	Eco57I restriction-modification methylase	Eco57I
UHGV-0143918_42	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0143918_42	Structural annotation	PF02384, MF_02126, TIGR02987, COG0827	NA	NA
UHGV-0143918_43	PHROG	phrog_87	metallo-protease	other
UHGV-0143918_43	UniRef90	UniRef90_A0A0N1HW48	Peptidase_M78 domain-containing protein	NA
UHGV-0143918_43	eggNOG-mapper	1151292.QEW_1741	IrrE N-terminal-like domain	NA
UHGV-0143918_43	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0143918_43	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0143918_43	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0143918_44	KOfam	K14059	int; integrase	NA
UHGV-0143918_44	PHROG	phrog_1	integrase	integration and excision
UHGV-0143918_44	UniRef90	UniRef90_A0A0A8WIE1	Integrase	NA
UHGV-0143918_44	eggNOG-mapper	1582149.A0A0A8WIE1_9CAUD	Phage integrase family	NA
UHGV-0143918_44	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0143918_44	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0143918_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0143918_44	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA