UHGV-0143959

Genome information

Genome length 32,320 bps

CDS count 49

Completeness 85.47% (medium-quality)

geNomad score 0.9764

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143959
vOTU ID	vOTU-040179
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_424122
BioSample	SAMN05827167
Country	Estonia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.47% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9764
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.42
Jumbo phage	No

Genome content
Genome length	32,320 bps
GC content	51.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	90.77%
Average CDS length	601.41 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143959_1	KOfam	K01491	folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]	NA
UHGV-0143959_1	PHROG	phrog_7320	tetrahydrofolate dehydrogenase and cyclohydrolase	other
UHGV-0143959_1	UniRef90	UniRef90_A4W7J0	Bifunctional protein FolD	NA
UHGV-0143959_1	eggNOG-mapper	1286170.RORB6_12780	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate	NA
UHGV-0143959_1	Pfam	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain	THF_DHG_CYH
UHGV-0143959_1	Pfam	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain	THF_DHG_CYH_C
UHGV-0143959_1	NCBIFam	NF008058.0	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA
UHGV-0143959_1	COG	COG0190	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	NA
UHGV-0143959_1	HAMAP	MF_01576	Bifunctional protein FolD [folD]	NA
UHGV-0143959_1	Structural annotation	PF02882, PF00763, MF_01576, NF010775, COG0190	NA	NA
UHGV-0143959_2	UniRef90	UniRef90_A0A1V2BVB2	AlpA family phage regulatory protein	NA
UHGV-0143959_2	eggNOG-mapper	598467.BrE312_1882	Prophage CP4-57 regulatory protein (AlpA)	NA
UHGV-0143959_2	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0143959_3	PHROG	phrog_10509	NA	unknown function
UHGV-0143959_4	PHROG	phrog_6158	NA	unknown function
UHGV-0143959_4	Structural annotation	PF15188, TIGR02436	NA	NA
UHGV-0143959_5	PHROG	phrog_1001	NA	unknown function
UHGV-0143959_5	eggNOG-mapper	573.JG24_10795	NA	NA
UHGV-0143959_5	Structural annotation	PF00936, MF_00854, NF012018, COG4577	NA	NA
UHGV-0143959_6	PHROG	phrog_3007	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0143959_6	eggNOG-mapper	1397284.AYMN01000067_gene2207	NA	NA
UHGV-0143959_6	Structural annotation	MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0143959_7	KOfam	K04087	hflC; modulator of FtsH protease HflC	NA
UHGV-0143959_7	PHROG	phrog_200	lipoprotein	other
UHGV-0143959_7	UniRef90	UniRef90_A0A2U0LHW6	Gp20	NA
UHGV-0143959_7	eggNOG-mapper	103807.Q8W654_9CAUD	SPFH domain / Band 7 family	NA
UHGV-0143959_7	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0143959_7	Structural annotation	PF01145, MF_01562, TIGR01932, COG0330	NA	NA
UHGV-0143959_8	PHROG	phrog_1130	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0143959_8	UniRef90	UniRef90_A0A3T7Z3M5	Glycosyltransferase family 4 protein	NA
UHGV-0143959_9	PHROG	phrog_1886	NA	unknown function
UHGV-0143959_9	eggNOG-mapper	1111728.ATYS01000081_gene4346	NA	NA
UHGV-0143959_10	PHROG	phrog_340	NA	unknown function
UHGV-0143959_10	eggNOG-mapper	198628.Dda3937_02196	NA	NA
UHGV-0143959_11	PHROG	phrog_1737	NA	unknown function
UHGV-0143959_11	eggNOG-mapper	406818.XBJ1_2012	NA	NA
UHGV-0143959_11	Structural annotation	PF17345	NA	NA
UHGV-0143959_12	PHROG	phrog_8959	NA	unknown function
UHGV-0143959_12	eggNOG-mapper	1005994.GTGU_01793	NA	NA
UHGV-0143959_13	eggNOG-mapper	1005994.GTGU_02648	NA	NA
UHGV-0143959_14	PHROG	phrog_1478	NA	unknown function
UHGV-0143959_14	eggNOG-mapper	155864.EDL933_1778	NA	NA
UHGV-0143959_15	PHROG	phrog_2583	NA	unknown function
UHGV-0143959_16	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0143959_16	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0143959_16	UniRef90	UniRef90_UPI001CCC1E4E	LexA family transcriptional regulator	NA
UHGV-0143959_16	eggNOG-mapper	1090133.G8EYH7_9CAUD	Peptidase S24-like	NA
UHGV-0143959_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143959_16	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0143959_16	Structural annotation	PF00717, PF01381, MF_00015, NF007257, NF007621, COG2932	NA	NA
UHGV-0143959_17	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0143959_17	UniRef90	UniRef90_UPI0010478CD1	helix-turn-helix domain-containing protein	NA
UHGV-0143959_17	eggNOG-mapper	1437882.AZRU01000034_gene466	Helix-turn-helix XRE-family like proteins	NA
UHGV-0143959_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143959_17	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0143959_17	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0143959_19	PHROG	phrog_852	NA	unknown function
UHGV-0143959_19	eggNOG-mapper	1524467.IV04_14540	NA	NA
UHGV-0143959_20	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0143959_20	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0143959_20	UniRef90	UniRef90_A0A6L7EH01	DEAD/DEAH box helicase	NA
UHGV-0143959_20	eggNOG-mapper	1005994.GTGU_01789	helicase	NA
UHGV-0143959_20	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0143959_20	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0143959_20	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0143959_20	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0143959_20	Structural annotation	PF07652, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0143959_21	PHROG	phrog_510	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0143959_21	UniRef90	UniRef90_A0A6L7EKM4	DNA primase	NA
UHGV-0143959_21	eggNOG-mapper	1205683.CAKR01000013_gene1125	Zinc-binding domain of primase-helicase	NA
UHGV-0143959_21	Pfam	PF08273	Zinc-binding domain of primase-helicase	Prim_Zn_Ribbon
UHGV-0143959_21	Pfam	PF13362	Toprim domain	Toprim_3
UHGV-0143959_21	COG	COG4643	NA	NA
UHGV-0143959_21	Structural annotation	PF13362, PF01807, MF_00974, TIGR01391, COG4643	NA	NA
UHGV-0143959_22	PHROG	phrog_127	anti-termination protein Q-like	transcription regulation
UHGV-0143959_22	UniRef90	UniRef90_A0A1Q8Z2B9	Antitermination protein	NA
UHGV-0143959_22	eggNOG-mapper	1005994.GTGU_01786	Antitermination protein	NA
UHGV-0143959_22	Pfam	PF03589	Antitermination protein	Antiterm
UHGV-0143959_22	COG	COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	NA
UHGV-0143959_22	HAMAP	MF_04158	Antitermination protein Q [Q]	NA
UHGV-0143959_22	Structural annotation	PF03589, PF00684, MF_04158, TIGR02642	NA	NA
UHGV-0143959_23	PHROG	phrog_785	holin	lysis
UHGV-0143959_23	UniRef90	UniRef90_A0A331VEA5	Drug/metabolite transporter (DMT) superfamily permease	NA
UHGV-0143959_23	eggNOG-mapper	155864.EDL933_1818	LydA holin phage, holin superfamily III	NA
UHGV-0143959_23	Pfam	PF16083	LydA holin phage, holin superfamily III	Phage_holin_3_3
UHGV-0143959_23	Structural annotation	PF16083	NA	NA
UHGV-0143959_24	KOfam	K22918	ttsA; typhoid toxin secretion A	NA
UHGV-0143959_24	PHROG	phrog_12853	NA	unknown function
UHGV-0143959_24	UniRef90	UniRef90_A0A2J4ZW05	PG_binding_3 domain-containing protein	NA
UHGV-0143959_24	eggNOG-mapper	82996.sch_09785	secretion activating protein	NA
UHGV-0143959_24	Pfam	PF05838	Glycosyl hydrolase 108	Glyco_hydro_108
UHGV-0143959_24	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-0143959_24	COG	COG3926	Lysozyme family protein	NA
UHGV-0143959_24	Structural annotation	PF05838, PF09374, NF040573, COG3926	NA	NA
UHGV-0143959_25	PHROG	phrog_1356	holin	lysis
UHGV-0143959_25	UniRef90	UniRef90_A0A0M2KDI3	Membrane protein	NA
UHGV-0143959_25	eggNOG-mapper	1484158.PSNIH1_09125	NA	NA
UHGV-0143959_26	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-0143959_26	eggNOG-mapper	571.MC52_01455	NA	NA
UHGV-0143959_27	PHROG	phrog_571	NA	unknown function
UHGV-0143959_27	UniRef90	UniRef90_UPI001F3C1A83	NA	NA
UHGV-0143959_27	eggNOG-mapper	573.JG24_10960	NA	NA
UHGV-0143959_27	Pfam	PF10834	NA	DUF2560
UHGV-0143959_27	Structural annotation	PF10834	NA	NA
UHGV-0143959_28	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0143959_28	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0143959_28	UniRef90	UniRef90_A0A2J4VM92	HNH endonuclease	NA
UHGV-0143959_28	eggNOG-mapper	640513.Entas_3084	HNH endonuclease	NA
UHGV-0143959_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0143959_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0143959_28	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0143959_29	UniRef90	UniRef90_A0A4P1AQM8	CCHC-type domain-containing protein	NA
UHGV-0143959_30	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0143959_30	UniRef90	UniRef90_UPI001A32AA2E	phage terminase small subunit P27 family	NA
UHGV-0143959_30	eggNOG-mapper	517433.PanABDRAFT_0987	phage terminase, small subunit	NA
UHGV-0143959_30	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0143959_30	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0143959_30	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0143959_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0143959_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0143959_31	UniRef90	UniRef90_A0A3G2FCW0	Terminase large subunit	NA
UHGV-0143959_31	eggNOG-mapper	517433.PanABDRAFT_0988	Phage Terminase	NA
UHGV-0143959_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0143959_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0143959_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0143959_31	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0143959_32	PHROG	phrog_7105	NA	unknown function
UHGV-0143959_32	UniRef90	UniRef90_A0A163XUY0	Membrane protein	NA
UHGV-0143959_32	eggNOG-mapper	1332071.L581_3145	NA	NA
UHGV-0143959_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-0143959_33	UniRef90	UniRef90_A0A7I7A5G0	Portal protein	NA
UHGV-0143959_33	eggNOG-mapper	399742.Ent638_2600	TIGRFAM Phage portal protein, HK97	NA
UHGV-0143959_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0143959_33	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0143959_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0143959_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0143959_34	KOfam	K06904	NA	NA
UHGV-0143959_34	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0143959_34	UniRef90	UniRef90_A0A133LFS7	Phage prohead protease, HK97 family	NA
UHGV-0143959_34	eggNOG-mapper	667121.ET1_08_01070	Prohead protease	NA
UHGV-0143959_34	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0143959_34	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0143959_34	COG	COG3740	Phage head maturation protease	NA
UHGV-0143959_34	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0143959_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-0143959_35	UniRef90	UniRef90_A0A443VM62	Phage major capsid protein	NA
UHGV-0143959_35	eggNOG-mapper	399742.Ent638_2598	TIGRFAM Phage major capsid protein, HK97	NA
UHGV-0143959_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0143959_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0143959_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0143959_35	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0143959_36	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0143959_36	UniRef90	UniRef90_UPI0010EC0E0C	head-tail connector protein	NA
UHGV-0143959_36	eggNOG-mapper	1410619.SRDD_27480	Phage gp6-like head-tail connector protein	NA
UHGV-0143959_36	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0143959_36	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0143959_36	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0143959_37	PHROG	phrog_25	head closure Hc1	connector
UHGV-0143959_37	UniRef90	UniRef90_UPI000949DD4E	phage head closure protein	NA
UHGV-0143959_37	eggNOG-mapper	573.JG24_11005	head-tail adaptor	NA
UHGV-0143959_37	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0143959_37	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0143959_37	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0143959_37	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0143959_38	PHROG	phrog_23409	NA	unknown function
UHGV-0143959_38	UniRef90	UniRef90_UPI000949D04B	HK97 gp10 family phage protein	NA
UHGV-0143959_38	eggNOG-mapper	571.MC52_01380	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0143959_38	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0143959_38	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0143959_38	Structural annotation	TIGR01725	NA	NA
UHGV-0143959_39	PHROG	phrog_347	tail terminator	connector
UHGV-0143959_39	UniRef90	UniRef90_UPI000949FCD2	NA	NA
UHGV-0143959_39	eggNOG-mapper	571.MC52_01375	Structural component (Phage or Prophage Related)	NA
UHGV-0143959_39	Pfam	PF11367	NA	DUF3168
UHGV-0143959_39	Structural annotation	PF11367	NA	NA
UHGV-0143959_40	PHROG	phrog_158	major tail protein	tail
UHGV-0143959_40	UniRef90	UniRef90_UPI000949C693	immunoglobulin domain-containing protein	NA
UHGV-0143959_40	eggNOG-mapper	573.JG24_11020	NA	NA
UHGV-0143959_40	Pfam	PF13927	Immunoglobulin domain	Ig_3
UHGV-0143959_40	Structural annotation	PF16461, PF13895, MF_04116, TIGR02126, COG5437	NA	NA
UHGV-0143959_41	PHROG	phrog_344	tail assembly chaperone	tail
UHGV-0143959_41	UniRef90	UniRef90_UPI001C6080A8	phage tail assembly chaperone	NA
UHGV-0143959_41	eggNOG-mapper	571.MC52_01365	tail assembly chaperone	NA
UHGV-0143959_41	Pfam	PF06222	Phage tail assembly chaperone	Phage_TAC_1
UHGV-0143959_41	Structural annotation	PF06222	NA	NA
UHGV-0143959_42	PHROG	phrog_14766	tail protein	tail
UHGV-0143959_42	UniRef90	UniRef90_UPI001180A68A	NA	NA
UHGV-0143959_42	eggNOG-mapper	571.MC52_01360	NA	NA
UHGV-0143959_42	Pfam	PF13227	NA	DUF4035
UHGV-0143959_42	Structural annotation	PF06223, TIGR01715	NA	NA
UHGV-0143959_43	PHROG	phrog_12025	NA	unknown function
UHGV-0143959_43	UniRef90	UniRef90_UPI000949D69D	NA	NA
UHGV-0143959_43	eggNOG-mapper	436717.AOLE_09380	NA	NA
UHGV-0143959_44	PHROG	phrog_339	tail length tape measure protein	tail
UHGV-0143959_44	UniRef90	UniRef90_UPI00117DF742	phage tail tape measure protein	NA
UHGV-0143959_44	eggNOG-mapper	573.JG24_11040	tape measure protein	NA
UHGV-0143959_44	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0143959_44	Pfam	PF06120	Tail length tape measure protein	Phage_HK97_TLTM
UHGV-0143959_44	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0143959_44	NCBIFam	TIGR01541.1	phage tail tape measure protein	NA
UHGV-0143959_44	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0143959_44	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-0143959_45	PHROG	phrog_384	virion structural protein	head and packaging
UHGV-0143959_45	UniRef90	UniRef90_A0A163VZJ0	Membrane protein	NA
UHGV-0143959_45	eggNOG-mapper	571.MC52_01345	NA	NA
UHGV-0143959_45	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0143959_46	PHROG	phrog_396	minor tail protein	tail
UHGV-0143959_46	UniRef90	UniRef90_A0A1D8JSR1	ArsR family transcriptional regulator	NA
UHGV-0143959_46	eggNOG-mapper	573.JG24_11050	NA	NA
UHGV-0143959_46	Pfam	PF08875	NA	DUF1833
UHGV-0143959_46	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0143959_47	UniRef90	UniRef90_A0A1D8JSR0	Nitrite transporter	NA
UHGV-0143959_47	eggNOG-mapper	573.JG24_11055	NA	NA
UHGV-0143959_47	Structural annotation	TIGR02219	NA	NA
UHGV-0143959_48	PHROG	phrog_469	tail protein	tail
UHGV-0143959_48	UniRef90	UniRef90_A0A1D8JSQ6	Kinase	NA
UHGV-0143959_48	eggNOG-mapper	571.MC52_01330	cellulase activity	NA
UHGV-0143959_48	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0143959_48	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0143959_48	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0143959_48	Structural annotation	PF13550, NF040662, TIGR01683, COG4733, COG2104	NA	NA
UHGV-0143959_49	PHROG	phrog_9750	NA	unknown function
UHGV-0143959_49	UniRef90	UniRef90_A0A377TI95	Flagellar biosynthesis, cell-distal portion of basal-body rod	NA
UHGV-0143959_49	eggNOG-mapper	573.JG24_11065	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-0143959_49	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA