UHGV-0143975

Genome information

Genome length 47,170 bps

CDS count 53

Completeness 57.03% (medium-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143975
vOTU ID	vOTU-039187
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_413446
BioSample	NA
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.03% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.55
Jumbo phage	No

Genome content
Genome length	47,170 bps
GC content	47.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.89%
Average CDS length	836.49 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143975_1	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0143975_2	eggNOG-mapper	411477.PARMER_02071	NA	NA
UHGV-0143975_2	Structural annotation	PF20338	NA	NA
UHGV-0143975_3	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0143975_3	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0143975_3	UniRef90	UniRef90_A0A415VGU6	AAA_23 domain-containing protein	NA
UHGV-0143975_3	eggNOG-mapper	1121285.AUFK01000002_gene9	nuclear chromosome segregation	NA
UHGV-0143975_3	Pfam	PF13476	AAA domain	AAA_23
UHGV-0143975_3	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0143975_3	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0143975_4	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0143975_4	UniRef90	UniRef90_UPI001D032ADE	recombinase RecT	NA
UHGV-0143975_4	eggNOG-mapper	1215092.PA6_009_00610	NA	NA
UHGV-0143975_4	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0143975_5	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0143975_5	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0143975_5	UniRef90	UniRef90_A0A7H1MQA2	MBL fold metallo-hydrolase	NA
UHGV-0143975_5	eggNOG-mapper	86416.Clopa_2515	Metallo-beta-lactamase superfamily	NA
UHGV-0143975_5	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0143975_5	dbAPIS	APIS058	NA	NA
UHGV-0143975_5	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0143975_5	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0143975_7	eggNOG-mapper	762982.HMPREF9442_01206	NA	NA
UHGV-0143975_8	PHROG	phrog_38431	NA	unknown function
UHGV-0143975_8	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-0143975_8	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-0143975_10	PHROG	phrog_28898	NA	unknown function
UHGV-0143975_10	eggNOG-mapper	411901.BACCAC_01110	NA	NA
UHGV-0143975_10	Structural annotation	PF10781	NA	NA
UHGV-0143975_11	PHROG	phrog_31654	NA	unknown function
UHGV-0143975_11	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-0143975_12	PHROG	phrog_16490	NA	unknown function
UHGV-0143975_12	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-0143975_12	eggNOG-mapper	411901.BACCAC_01112	NA	NA
UHGV-0143975_13	UniRef90	UniRef90_UPI001C2B78AF	helix-turn-helix domain-containing protein	NA
UHGV-0143975_13	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0143975_13	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-0143975_15	eggNOG-mapper	679190.HMPREF0650_1967	NA	NA
UHGV-0143975_16	eggNOG-mapper	449673.BACSTE_00852	NA	NA
UHGV-0143975_17	PHROG	phrog_1501	NA	unknown function
UHGV-0143975_17	UniRef90	UniRef90_R6EVM2	NA	NA
UHGV-0143975_17	eggNOG-mapper	679935.Alfi_0537	NA	NA
UHGV-0143975_17	Pfam	PF18925	NA	DUF5675
UHGV-0143975_17	Structural annotation	PF18925	NA	NA
UHGV-0143975_18	UniRef90	UniRef90_UPI00164B2973	glycosyl transferase	NA
UHGV-0143975_18	eggNOG-mapper	411479.BACUNI_00732	NA	NA
UHGV-0143975_19	UniRef90	UniRef90_UPI001F1F31EC	NA	NA
UHGV-0143975_19	eggNOG-mapper	411901.BACCAC_01123	NA	NA
UHGV-0143975_19	Pfam	PF14301	NA	DUF4376
UHGV-0143975_19	Structural annotation	PF14301	NA	NA
UHGV-0143975_20	UniRef90	UniRef90_UPI001F431ADA	BspA family leucine-rich repeat surface protein	NA
UHGV-0143975_20	Pfam	PF03382	NA	DUF285
UHGV-0143975_20	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0143975_20	Structural annotation	PF03382, PF16640, PF18315, NF032891	NA	NA
UHGV-0143975_21	PHROG	phrog_38044	NA	unknown function
UHGV-0143975_21	eggNOG-mapper	1121100.JCM6294_565	Phage minor structural protein	NA
UHGV-0143975_21	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-0143975_21	COG	COG4926	Phage-related protein	NA
UHGV-0143975_21	Structural annotation	PF14594, NF033848, COG4926	NA	NA
UHGV-0143975_22	eggNOG-mapper	1236504.HMPREF2132_11265	NA	NA
UHGV-0143975_22	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0143975_23	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0143975_23	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0143975_23	UniRef90	UniRef90_UPI00056108A0	glycine zipper domain-containing protein	NA
UHGV-0143975_23	eggNOG-mapper	742727.HMPREF9447_04839	tape measure	NA
UHGV-0143975_23	COG	COG1511	NA	NA
UHGV-0143975_25	Structural annotation	PF08813, TIGR01603, COG5437	NA	NA
UHGV-0143975_26	Structural annotation	PF06141	NA	NA
UHGV-0143975_27	PHROG	phrog_5377	NA	unknown function
UHGV-0143975_28	Structural annotation	PF13437	NA	NA
UHGV-0143975_29	eggNOG-mapper	1236504.HMPREF2132_11200	NA	NA
UHGV-0143975_29	Structural annotation	PF20449	NA	NA
UHGV-0143975_30	PHROG	phrog_29	major head protein	head and packaging
UHGV-0143975_30	UniRef90	UniRef90_A0A8B2AWS5	Major capsid protein	NA
UHGV-0143975_30	Structural annotation	PF03864, MF_04133, TIGR04387, COG4834	NA	NA
UHGV-0143975_31	Structural annotation	PF21430	NA	NA
UHGV-0143975_33	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0143975_33	UniRef90	UniRef90_A0A6A7W1V0	Terminase	NA
UHGV-0143975_33	eggNOG-mapper	1236504.HMPREF2132_11175	Terminase-like family	NA
UHGV-0143975_33	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0143975_33	COG	COG5362	Phage terminase large subunit	NA
UHGV-0143975_33	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG5323	NA	NA
UHGV-0143975_34	PHROG	phrog_64	portal protein	head and packaging
UHGV-0143975_34	UniRef90	UniRef90_UPI001C2C654D	phage portal protein	NA
UHGV-0143975_34	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0143975_35	eggNOG-mapper	1236504.HMPREF2132_11155	NA	NA
UHGV-0143975_35	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0143975_38	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0143975_38	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0143975_38	UniRef90	UniRef90_UPI001C2C5599	NA	NA
UHGV-0143975_38	eggNOG-mapper	1236504.HMPREF2132_11050	Phage plasmid primase, P4 family domain protein	NA
UHGV-0143975_38	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0143975_38	Pfam	PF19263	NA	DUF5906
UHGV-0143975_38	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0143975_38	Structural annotation	PF04735, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-0143975_39	PHROG	phrog_10156	NA	unknown function
UHGV-0143975_39	eggNOG-mapper	742727.HMPREF9447_04840	NA	NA
UHGV-0143975_41	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0143975_41	UniRef90	UniRef90_A0A1L8CM45	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-0143975_41	eggNOG-mapper	153496.JNAB01000022_gene2638	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-0143975_41	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0143975_41	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0143975_42	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0143975_42	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0143975_42	UniRef90	UniRef90_UPI0018A934BF	dUTP diphosphatase	NA
UHGV-0143975_42	eggNOG-mapper	592026.GCWU0000282_002542	NA	NA
UHGV-0143975_42	Pfam	PF00692	dUTPase	dUTPase
UHGV-0143975_42	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0143975_42	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0143975_47	PHROG	phrog_1365	NA	unknown function
UHGV-0143975_49	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0143975_49	UniRef90	UniRef90_A0A413BQE0	NAD(P)-dependent oxidoreductase	NA
UHGV-0143975_49	eggNOG-mapper	1231377.C426_1976	DNA restriction-modification system	NA
UHGV-0143975_49	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0143975_49	Structural annotation	PF03848, MF_00341, NF012219, COG1255	NA	NA
UHGV-0143975_51	PHROG	phrog_1485	NA	unknown function
UHGV-0143975_51	UniRef90	UniRef90_UPI001C2C3223	nucleotide modification associated domain-containing protein	NA
UHGV-0143975_51	eggNOG-mapper	240302.BN982_00203	NA	NA
UHGV-0143975_51	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0143975_51	Structural annotation	PF07659	NA	NA