UHGV-0143987

Genome information

Genome length 31,757 bps

CDS count 43

Completeness 59.29% (medium-quality)

geNomad score 0.9670

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143987
vOTU ID	vOTU-023996
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_434372
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.29% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9670
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.54
Jumbo phage	No

Genome content
Genome length	31,757 bps
GC content	33.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	96.05%
Average CDS length	713.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143987_2	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0143987_2	UniRef90	UniRef90_A7B3R2	Siphovirus Gp157	NA
UHGV-0143987_2	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0143987_2	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0143987_2	Structural annotation	PF05565	NA	NA
UHGV-0143987_3	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0143987_3	UniRef90	UniRef90_UPI00195E1D01	AAA family ATPase	NA
UHGV-0143987_3	eggNOG-mapper	1235792.C808_05390	AAA domain	NA
UHGV-0143987_3	Pfam	PF13479	AAA domain	AAA_24
UHGV-0143987_3	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0143987_4	PHROG	phrog_2698	NA	unknown function
UHGV-0143987_4	UniRef90	UniRef90_A0A3D5UGJ1	NA	NA
UHGV-0143987_4	eggNOG-mapper	1123511.KB905868_gene200	NA	NA
UHGV-0143987_4	Structural annotation	PF05037	NA	NA
UHGV-0143987_5	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0143987_5	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0143987_5	UniRef90	UniRef90_A0A2K9P635	DEAD/DEAH box helicase	NA
UHGV-0143987_5	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-0143987_5	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0143987_5	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0143987_5	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0143987_5	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0143987_5	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0143987_6	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0143987_6	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0143987_6	UniRef90	UniRef90_A0A316PCV6	DNA primase	NA
UHGV-0143987_6	eggNOG-mapper	1232449.BAHV02000008_gene621	Primase C terminal 2 (PriCT-2)	NA
UHGV-0143987_6	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0143987_6	Pfam	PF13481	AAA domain	AAA_25
UHGV-0143987_6	COG	COG3598	RecA-family ATPase	NA
UHGV-0143987_6	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0143987_8	PHROG	phrog_16687	NA	unknown function
UHGV-0143987_8	eggNOG-mapper	1123511.KB905868_gene197	NA	NA
UHGV-0143987_9	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0143987_9	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0143987_9	UniRef90	UniRef90_A0A316PB58	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0143987_9	eggNOG-mapper	1235792.C808_05386	Endodeoxyribonuclease RusA	NA
UHGV-0143987_9	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0143987_9	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0143987_9	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0143987_11	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0143987_11	UniRef90	UniRef90_A0A2K9P078	NA	NA
UHGV-0143987_11	eggNOG-mapper	881915.E1Y3U1_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0143987_11	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0143987_11	Structural annotation	PF18909	NA	NA
UHGV-0143987_12	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0143987_12	UniRef90	UniRef90_A0A2K9P072	RNA polymerase subunit sigma-24	NA
UHGV-0143987_12	eggNOG-mapper	1347392.CCEZ01000005_gene1225	NA	NA
UHGV-0143987_12	Structural annotation	PF02996	NA	NA
UHGV-0143987_13	PHROG	phrog_2412	NA	unknown function
UHGV-0143987_15	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0143987_15	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0143987_15	UniRef90	UniRef90_A0A4P5P4X6	PAPS_reduct domain-containing protein	NA
UHGV-0143987_15	eggNOG-mapper	641147.HMPREF9021_02236	sulfate reduction	NA
UHGV-0143987_15	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0143987_15	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0143987_15	Structural annotation	PF01507, MF_00345, NF006351, COG0175	NA	NA
UHGV-0143987_16	PHROG	phrog_9353	NA	unknown function
UHGV-0143987_16	UniRef90	UniRef90_A0A4P5P3Z7	ParB domain-containing protein	NA
UHGV-0143987_16	eggNOG-mapper	1231336.L248_2139	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0143987_16	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0143987_16	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0143987_16	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0143987_16	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-0143987_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0143987_17	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0143987_17	UniRef90	UniRef90_U1Y2Q1	Phage terminase, large subunit, PBSX family	NA
UHGV-0143987_17	eggNOG-mapper	649747.HMPREF0083_05319	Terminase RNAseH like domain	NA
UHGV-0143987_17	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0143987_17	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0143987_17	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0143987_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-0143987_17	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0143987_19	PHROG	phrog_64	portal protein	head and packaging
UHGV-0143987_19	UniRef90	UniRef90_UPI00164E78B1	phage portal protein	NA
UHGV-0143987_19	eggNOG-mapper	887325.HMPREF0381_0085	Phage portal protein, SPP1 family	NA
UHGV-0143987_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0143987_19	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0143987_19	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0143987_20	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0143987_20	UniRef90	UniRef90_A0A2K2TW69	Phage_Mu_F domain-containing protein	NA
UHGV-0143987_20	eggNOG-mapper	887325.HMPREF0381_0084	Phage Mu protein F like protein	NA
UHGV-0143987_20	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0143987_20	COG	COG2369	NA	NA
UHGV-0143987_21	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0143987_21	Pfam	PF14265	NA	DUF4355
UHGV-0143987_21	Structural annotation	PF14265	NA	NA
UHGV-0143987_22	PHROG	phrog_909	major head protein	head and packaging
UHGV-0143987_22	UniRef90	UniRef90_A0A098MDH2	NA	NA
UHGV-0143987_22	eggNOG-mapper	268407.PWYN_15680	NA	NA
UHGV-0143987_23	PHROG	phrog_29	major head protein	head and packaging
UHGV-0143987_23	UniRef90	UniRef90_A0A843H3I9	Major capsid protein	NA
UHGV-0143987_23	eggNOG-mapper	1232453.BAIF02000058_gene1628	Phage major capsid protein E	NA
UHGV-0143987_23	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0143987_23	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0143987_26	PHROG	phrog_222	tail protein	tail
UHGV-0143987_26	UniRef90	UniRef90_A0A2D1GQ83	Putative morphogenesis protein	NA
UHGV-0143987_26	eggNOG-mapper	887325.HMPREF0381_0078	NA	NA
UHGV-0143987_27	PHROG	phrog_1661	NA	unknown function
UHGV-0143987_27	eggNOG-mapper	226185.EF_1467	NA	NA
UHGV-0143987_27	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0143987_28	PHROG	phrog_1232	NA	unknown function
UHGV-0143987_28	eggNOG-mapper	1230341.MJ3_13644	NA	NA
UHGV-0143987_28	Structural annotation	PF08873	NA	NA
UHGV-0143987_30	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0143987_30	UniRef90	UniRef90_UPI000836ABD3	NA	NA
UHGV-0143987_30	eggNOG-mapper	1117108.PAALTS15_10504	NA	NA
UHGV-0143987_30	Pfam	PF11863	NA	DUF3383
UHGV-0143987_30	Structural annotation	PF11863, COG3497	NA	NA
UHGV-0143987_31	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-0143987_31	UniRef90	UniRef90_UPI00189F4CD7	NA	NA
UHGV-0143987_31	eggNOG-mapper	1395513.P343_07935	NA	NA
UHGV-0143987_31	Pfam	PF11681	Bacteriophage KPP10, Structural protein ORF10	KPP10_Orf10
UHGV-0143987_31	Structural annotation	PF11681, TIGR02241, COG5437	NA	NA
UHGV-0143987_32	PHROG	phrog_1778	NA	unknown function
UHGV-0143987_32	Structural annotation	PF16462	NA	NA
UHGV-0143987_34	PHROG	phrog_1204	tail protein	tail
UHGV-0143987_34	eggNOG-mapper	537013.CLOSTMETH_01744	tape measure	NA
UHGV-0143987_34	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0143987_35	PHROG	phrog_1517	endolysin	lysis
UHGV-0143987_35	eggNOG-mapper	887325.HMPREF0381_0071	positive regulation of growth rate	NA
UHGV-0143987_35	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0143987_35	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0143987_36	PHROG	phrog_1264	NA	unknown function
UHGV-0143987_36	eggNOG-mapper	749413.E5DV60_9VIRU	NA	NA
UHGV-0143987_37	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0143987_37	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-0143987_37	eggNOG-mapper	1121115.AXVN01000051_gene809	NLP P60 protein	NA
UHGV-0143987_37	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0143987_37	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0143987_38	COG	COG2340	Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domain	NA
UHGV-0143987_39	Structural annotation	PF18352	NA	NA
UHGV-0143987_40	PHROG	phrog_120	baseplate protein	tail
UHGV-0143987_40	UniRef90	UniRef90_UPI00140D27D4	NA	NA
UHGV-0143987_40	eggNOG-mapper	1121091.AUMP01000032_gene3114	NA	NA
UHGV-0143987_40	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0143987_41	PHROG	phrog_6	baseplate protein	tail
UHGV-0143987_41	UniRef90	UniRef90_UPI00164E5EF6	baseplate J/gp47 family protein	NA
UHGV-0143987_41	eggNOG-mapper	887325.HMPREF0381_0066	Baseplate J-like protein	NA
UHGV-0143987_41	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0143987_41	COG	COG3299	NA	NA
UHGV-0143987_41	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0143987_42	PHROG	phrog_1160	baseplate protein	tail
UHGV-0143987_42	UniRef90	UniRef90_A0A7Z0PRA1	NA	NA
UHGV-0143987_42	eggNOG-mapper	1307436.PBF_04430	NA	NA
UHGV-0143987_42	Pfam	PF11041	NA	DUF2612
UHGV-0143987_42	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-0143987_43	PHROG	phrog_2126	tail fiber protein	tail
UHGV-0143987_43	eggNOG-mapper	1449338.JQLU01000005_gene3784	NA	NA