UHGV-0143995

Genome information

Genome length 43,360 bps

CDS count 58

Completeness 99.90% (high-quality)

geNomad score 0.9655

Prediction confidence Confident

Genome information
Genome ID	UHGV-0143995
vOTU ID	vOTU-061112
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_431903
BioSample	SAMN05545072
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9655
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.5
Jumbo phage	No

Genome content
Genome length	43,360 bps
GC content	55.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	91.54%
Average CDS length	689.12 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0143995_1	PHROG	phrog_37799	NA	unknown function
UHGV-0143995_1	UniRef90	UniRef90_A0A417QGM4	Protein utxA	NA
UHGV-0143995_1	eggNOG-mapper	272563.CD630_06610	Bacteriophage holin family	NA
UHGV-0143995_1	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0143995_1	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0143995_1	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0143995_2	KOfam	K07273	acm; lysozyme	NA
UHGV-0143995_2	PHROG	phrog_291	endolysin	lysis
UHGV-0143995_2	UniRef90	UniRef90_UPI00195E5E78	glycoside hydrolase family 25 protein	NA
UHGV-0143995_2	eggNOG-mapper	411471.SUBVAR_06927	Glycosyl hydrolases family 25	NA
UHGV-0143995_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0143995_2	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0143995_2	Structural annotation	PF01183, MF_02227, NF002576, COG3757	NA	NA
UHGV-0143995_5	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0143995_5	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0143995_5	UniRef90	UniRef90_A0A357TPP5	Reverse transcriptase domain-containing protein	NA
UHGV-0143995_5	eggNOG-mapper	657322.FPR_27160	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0143995_5	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0143995_5	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0143995_6	PHROG	phrog_17147	NA	unknown function
UHGV-0143995_6	UniRef90	UniRef90_A0A1M6MWL0	N-terminal domain of peptidoglycan hydrolase CwlO-containing protein	NA
UHGV-0143995_6	eggNOG-mapper	411459.RUMOBE_01720	NA	NA
UHGV-0143995_7	PHROG	phrog_16573	NA	unknown function
UHGV-0143995_7	UniRef90	UniRef90_W0U658	BppU_N domain-containing protein	NA
UHGV-0143995_7	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-0143995_7	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0143995_7	Structural annotation	PF10651, NF033814, COG2372	NA	NA
UHGV-0143995_9	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0143995_9	UniRef90	UniRef90_A0A3D5L0J3	Prophage_tail domain-containing protein	NA
UHGV-0143995_9	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0143995_9	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0143995_9	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0143995_9	COG	COG4926	Phage-related protein	NA
UHGV-0143995_9	Structural annotation	PF14594, PF00629, PF03424, TIGR01665, NF033675, COG4926	NA	NA
UHGV-0143995_10	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0143995_10	UniRef90	UniRef90_A0A1C5W6B6	Phage-related protein	NA
UHGV-0143995_10	eggNOG-mapper	536233.CLO_0897	tail component	NA
UHGV-0143995_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-0143995_10	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0143995_11	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0143995_11	UniRef90	UniRef90_E7GJW0	TMP repeat-containing protein	NA
UHGV-0143995_11	eggNOG-mapper	742740.HMPREF9474_01203	Phage tail tape measure protein, TP901 family	NA
UHGV-0143995_11	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0143995_11	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0143995_11	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0143995_12	eggNOG-mapper	1415774.U728_1245	NA	NA
UHGV-0143995_13	PHROG	phrog_29863	NA	unknown function
UHGV-0143995_13	eggNOG-mapper	665956.HMPREF1032_00110	NA	NA
UHGV-0143995_13	Structural annotation	PF17388	NA	NA
UHGV-0143995_14	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0143995_14	UniRef90	UniRef90_A0A644VRS9	S-l_SbsC_C domain-containing protein	NA
UHGV-0143995_14	eggNOG-mapper	665956.HMPREF1032_00111	NA	NA
UHGV-0143995_14	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0143995_16	UniRef90	UniRef90_UPI0019D0A5EF	HK97 gp10 family phage protein	NA
UHGV-0143995_16	eggNOG-mapper	1226322.HMPREF1545_00119	NA	NA
UHGV-0143995_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0143995_16	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0143995_17	PHROG	phrog_19734	NA	unknown function
UHGV-0143995_17	UniRef90	UniRef90_UPI00057FE645	phage head closure protein	NA
UHGV-0143995_17	eggNOG-mapper	1235798.C817_02576	NA	NA
UHGV-0143995_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0143995_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-0143995_19	UniRef90	UniRef90_A0A1T4YDE5	Phage major capsid protein, HK97 family	NA
UHGV-0143995_19	eggNOG-mapper	665956.HMPREF1032_00116	Phage capsid family	NA
UHGV-0143995_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0143995_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0143995_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0143995_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0143995_20	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0143995_20	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0143995_20	UniRef90	UniRef90_A0A1Y4BT12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0143995_20	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0143995_20	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0143995_20	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0143995_20	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0143995_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-0143995_21	UniRef90	UniRef90_A0A7G8TDY8	Phage portal protein	NA
UHGV-0143995_21	eggNOG-mapper	665956.HMPREF1032_00118	Phage portal protein, HK97 family	NA
UHGV-0143995_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0143995_21	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0143995_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0143995_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0143995_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0143995_22	UniRef90	UniRef90_UPI001C46A542	terminase large subunit	NA
UHGV-0143995_22	eggNOG-mapper	665956.HMPREF1032_00123	Phage terminase-like protein large subunit	NA
UHGV-0143995_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0143995_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0143995_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0143995_22	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0143995_23	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0143995_23	UniRef90	UniRef90_A0A4U7JDP0	P27 family phage terminase small subunit	NA
UHGV-0143995_23	eggNOG-mapper	665956.HMPREF1032_00124	NA	NA
UHGV-0143995_23	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0143995_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0143995_24	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0143995_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0143995_24	UniRef90	UniRef90_A0A7X5E0G7	HNH endonuclease	NA
UHGV-0143995_24	eggNOG-mapper	665956.HMPREF1032_00125	HNH nucleases	NA
UHGV-0143995_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0143995_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0143995_26	UniRef90	UniRef90_A0A645DPV0	Sigma70_r4 domain-containing protein	NA
UHGV-0143995_26	eggNOG-mapper	411471.SUBVAR_05843	NA	NA
UHGV-0143995_26	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0143995_28	PHROG	phrog_15609	NA	unknown function
UHGV-0143995_28	UniRef90	UniRef90_A0A3A6ESC2	NA	NA
UHGV-0143995_28	eggNOG-mapper	1514668.JOOA01000001_gene225	NA	NA
UHGV-0143995_28	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0143995_29	PHROG	phrog_8470	NA	unknown function
UHGV-0143995_29	UniRef90	UniRef90_UPI001F1BC041	PcfJ domain-containing protein	NA
UHGV-0143995_29	eggNOG-mapper	1007096.BAGW01000031_gene117	PcfJ-like protein	NA
UHGV-0143995_29	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0143995_29	Structural annotation	PF14284	NA	NA
UHGV-0143995_30	PHROG	phrog_36399	NA	unknown function
UHGV-0143995_30	eggNOG-mapper	1226322.HMPREF1545_00099	NA	NA
UHGV-0143995_31	PHROG	phrog_37023	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0143995_31	UniRef90	UniRef90_A0A6S6XBJ8	Tn7_Tnp_TnsA_N domain-containing protein	NA
UHGV-0143995_31	eggNOG-mapper	1487921.DP68_08770	NA	NA
UHGV-0143995_31	Pfam	PF06356	NA	DUF1064
UHGV-0143995_31	Structural annotation	PF06356, MF_04160, NF002584	NA	NA
UHGV-0143995_32	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0143995_32	eggNOG-mapper	525254.HMPREF0072_1311	NA	NA
UHGV-0143995_32	Structural annotation	PF21578	NA	NA
UHGV-0143995_33	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0143995_33	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0143995_33	UniRef90	UniRef90_UPI00096AAFE4	site-specific DNA-methyltransferase	NA
UHGV-0143995_33	eggNOG-mapper	1444310.JANV01000096_gene3256	DNA methylase	NA
UHGV-0143995_33	PADLOC	MTase_II_00051	Type II methyltransferase	RM
UHGV-0143995_33	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0143995_33	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-0143995_33	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0143995_34	PHROG	phrog_3136	NA	unknown function
UHGV-0143995_34	UniRef90	UniRef90_UPI001C018CFA	ASCH domain-containing protein	NA
UHGV-0143995_34	eggNOG-mapper	693746.OBV_25380	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0143995_34	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0143995_34	Structural annotation	PF08819, MF_00684, NF003443, COG4933	NA	NA
UHGV-0143995_35	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0143995_35	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-0143995_35	UniRef90	UniRef90_A0A8J6IP18	HD domain-containing protein	NA
UHGV-0143995_35	eggNOG-mapper	411483.FAEPRAA2165_03185	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0143995_35	Pfam	PF07514	Putative helicase	TraI_2
UHGV-0143995_35	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0143995_35	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-0143995_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0143995_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0143995_44	UniRef90	UniRef90_A0A645JJK5	HTH cro/C1-type domain-containing protein	NA
UHGV-0143995_44	eggNOG-mapper	1408416.JNJT01000003_gene143	sequence-specific DNA binding	NA
UHGV-0143995_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143995_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0143995_44	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0143995_45	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0143995_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0143995_45	UniRef90	UniRef90_W7DL38	Cro/CI family transcriptional regulator	NA
UHGV-0143995_45	eggNOG-mapper	706433.HMPREF9430_01295	NA	NA
UHGV-0143995_45	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0143995_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0143995_45	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0143995_45	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0143995_46	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0143995_46	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0143995_46	UniRef90	UniRef90_A0A1Q6T3W5	HicB family protein	NA
UHGV-0143995_46	eggNOG-mapper	657322.FPR_23750	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0143995_46	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0143995_46	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0143995_46	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0143995_47	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0143995_47	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0143995_47	UniRef90	UniRef90_A0A1Q6T334	Toxin HicA	NA
UHGV-0143995_47	eggNOG-mapper	478749.BRYFOR_07601	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0143995_47	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0143995_47	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0143995_47	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0143995_48	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0143995_48	PHROG	phrog_95	integrase	integration and excision
UHGV-0143995_48	UniRef90	UniRef90_UPI00195D2465	recombinase family protein	NA
UHGV-0143995_48	eggNOG-mapper	1235835.C814_01150	NA	NA
UHGV-0143995_48	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0143995_48	Pfam	PF07508	Recombinase	Recombinase
UHGV-0143995_48	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0143995_48	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0143995_48	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0143995_51	UniRef90	UniRef90_UPI00137A5703	helix-turn-helix transcriptional regulator	NA
UHGV-0143995_51	eggNOG-mapper	1226322.HMPREF1545_02167	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0143995_51	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0143995_51	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0143995_51	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0143995_52	UniRef90	UniRef90_A0A1T4WRX8	Bacteriocin transport accessory protein, putative	NA
UHGV-0143995_52	eggNOG-mapper	1232449.BAHV02000008_gene725	NA	NA
UHGV-0143995_53	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0143995_53	UniRef90	UniRef90_A0A1T4WS23	Ig-like domain (Group 2)	NA
UHGV-0143995_53	eggNOG-mapper	86416.Clopa_1814	Bacterial Ig-like domain 2	NA
UHGV-0143995_53	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0143995_53	COG	COG5492	NA	NA
UHGV-0143995_53	Structural annotation	PF02368, PF03921, PF21461, MF_04116, NF033186, COG5492	NA	NA
UHGV-0143995_56	UniRef90	UniRef90_A0A6N7VHA9	Core-binding (CB) domain-containing protein	NA
UHGV-0143995_56	eggNOG-mapper	877421.AUJT01000054_gene58	Belongs to the 'phage' integrase family	NA
UHGV-0143995_56	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0143995_56	Structural annotation	PF12834, PF00589, MF_01807, NF040815, COG4974	NA	NA
UHGV-0143995_57	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0143995_58	KOfam	K14059	int; integrase	NA
UHGV-0143995_58	PHROG	phrog_1	integrase	integration and excision
UHGV-0143995_58	UniRef90	UniRef90_E6U8Y4	Transcriptional regulator, XRE family	NA
UHGV-0143995_58	eggNOG-mapper	663278.Ethha_0463	Belongs to the 'phage' integrase family	NA
UHGV-0143995_58	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0143995_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0143995_58	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0143995_58	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA