UHGV-0144014

Genome information

Genome length 23,258 bps

CDS count 39

Completeness 55.45% (medium-quality)

geNomad score 0.9645

Prediction confidence Confident

Genome information
Genome ID	UHGV-0144014
vOTU ID	vOTU-023543
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_414486
BioSample	SAMN05414994
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.45% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9645
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.58
Jumbo phage	No

Genome content
Genome length	23,258 bps
GC content	55.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	93.77%
Average CDS length	567.08 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0144014_1	PHROG	phrog_264	major head protein	head and packaging
UHGV-0144014_1	eggNOG-mapper	1205683.CAKR01000013_gene1189	Protein conserved in bacteria	NA
UHGV-0144014_1	COG	COG4834	NA	NA
UHGV-0144014_2	PHROG	phrog_2122	minor head protein	head and packaging
UHGV-0144014_2	eggNOG-mapper	1408428.JNJP01000012_gene1116	NA	NA
UHGV-0144014_3	KOfam	K09960	NA	NA
UHGV-0144014_3	PHROG	phrog_2229	head maturation protease	head and packaging
UHGV-0144014_3	UniRef90	UniRef90_UPI001E52763D	NA	NA
UHGV-0144014_3	eggNOG-mapper	1408428.JNJP01000012_gene1115	NA	NA
UHGV-0144014_3	Pfam	PF09979	NA	DUF2213
UHGV-0144014_3	COG	COG3566	NA	NA
UHGV-0144014_3	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0144014_4	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-0144014_4	UniRef90	UniRef90_A0A1Y4CYL3	Phage_Mu_F domain-containing protein	NA
UHGV-0144014_4	eggNOG-mapper	1408428.JNJP01000012_gene1114	protein homolog of phage Mu protein gp30	NA
UHGV-0144014_4	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0144014_4	COG	COG2369	NA	NA
UHGV-0144014_4	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0144014_5	KOfam	K09961	NA	NA
UHGV-0144014_5	PHROG	phrog_146	portal protein	head and packaging
UHGV-0144014_5	UniRef90	UniRef90_UPI001D0BAEDD	NA	NA
UHGV-0144014_5	eggNOG-mapper	1408428.JNJP01000012_gene1113	NA	NA
UHGV-0144014_5	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0144014_5	COG	COG3567	NA	NA
UHGV-0144014_5	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0144014_6	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0144014_6	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0144014_6	UniRef90	UniRef90_A0A139K4Q1	Phage terminase, large subunit, PBSX family	NA
UHGV-0144014_6	eggNOG-mapper	2754.EH55_06905	DNA packaging	NA
UHGV-0144014_6	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0144014_6	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0144014_6	Pfam	PF14890	Intein splicing domain	Intein_splicing
UHGV-0144014_6	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0144014_6	COG	COG1783	Phage terminase large subunit	NA
UHGV-0144014_6	Structural annotation	PF04466, PF13403, PF17288, MF_04145, TIGR01547, NF038136, COG1783	NA	NA
UHGV-0144014_7	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0144014_7	UniRef90	UniRef90_UPI001F4FD8EF	DNA-binding protein	NA
UHGV-0144014_7	eggNOG-mapper	742823.HMPREF9465_00949	NA	NA
UHGV-0144014_7	Structural annotation	PF13022	NA	NA
UHGV-0144014_8	KOfam	K10026	queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]	NA
UHGV-0144014_8	PHROG	phrog_2076	QueE-like radical SAM domain	moron, auxiliary metabolic gene and host takeover
UHGV-0144014_8	UniRef90	UniRef90_H3KD59	7-carboxy-7-deazaguanine synthase	NA
UHGV-0144014_8	eggNOG-mapper	1117319.PSPO_17386	Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds	NA
UHGV-0144014_8	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0144014_8	NCBIFam	TIGR04322.1	7-carboxy-7-deazaguanine synthase QueE	NA
UHGV-0144014_8	COG	COG0602	Organic radical activating enzyme NrdG/QueE	NA
UHGV-0144014_8	HAMAP	MF_00917	7-carboxy-7-deazaguanine synthase [queE]	NA
UHGV-0144014_8	Structural annotation	PF04055, MF_00917, TIGR04508, COG0602	NA	NA
UHGV-0144014_9	KOfam	K01737	queD, ptpS, PTS; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]	NA
UHGV-0144014_9	PHROG	phrog_2389	QueD-like 6-pyruvoyl-tetrahydropterin synthase	moron, auxiliary metabolic gene and host takeover
UHGV-0144014_9	UniRef90	UniRef90_A0A2Z6IA84	6-carboxy-5,6,7,8-tetrahydropterin synthase	NA
UHGV-0144014_9	eggNOG-mapper	1175654.A0A0S0MVM4_9CAUD	6-pyruvoyl tetrahydropterin synthase	NA
UHGV-0144014_9	Pfam	PF01242	6-pyruvoyl tetrahydropterin synthase	PTPS
UHGV-0144014_9	Structural annotation	PF01242, TIGR00039, COG0720	NA	NA
UHGV-0144014_10	KOfam	K06920	queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]	NA
UHGV-0144014_10	PHROG	phrog_1550	QueC-like queuosine biosynthesis	moron, auxiliary metabolic gene and host takeover
UHGV-0144014_10	UniRef90	UniRef90_R7INW6	7-cyano-7-deazaguanine synthase	NA
UHGV-0144014_10	eggNOG-mapper	1410676.JNKL01000041_gene452	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))	NA
UHGV-0144014_10	Pfam	PF06508	Queuosine biosynthesis protein QueC	QueC
UHGV-0144014_10	NCBIFam	TIGR00364.1	7-cyano-7-deazaguanine synthase QueC	NA
UHGV-0144014_10	COG	COG0603	7-cyano-7-deazaguanine synthase (queuosine biosynthesis)	NA
UHGV-0144014_10	HAMAP	MF_01633	7-cyano-7-deazaguanine synthase [queC]	NA
UHGV-0144014_10	Structural annotation	PF06508, MF_01633, TIGR00364, COG0603	NA	NA
UHGV-0144014_11	KOfam	K01495	GCH1, folE; GTP cyclohydrolase IA [EC:3.5.4.16]	NA
UHGV-0144014_11	PHROG	phrog_2197	GTP cyclohydrolase	other
UHGV-0144014_11	UniRef90	UniRef90_A0A6J5TAY6	GTP cyclohydrolase I	NA
UHGV-0144014_11	eggNOG-mapper	118173.KB235910_gene5128	GTP cyclohydrolase I	NA
UHGV-0144014_11	Pfam	PF01227	GTP cyclohydrolase I	GTP_cyclohydroI
UHGV-0144014_11	COG	COG0302	GTP cyclohydrolase I	NA
UHGV-0144014_11	Structural annotation	PF01227, MF_00223, NF006824, COG0302	NA	NA
UHGV-0144014_12	PHROG	phrog_887	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0144014_12	UniRef90	UniRef90_A0A142F2D2	Queuine tRNA-ribosyltransferase	NA
UHGV-0144014_12	eggNOG-mapper	460265.Mnod_6265	Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	NA
UHGV-0144014_13	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0144014_13	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0144014_13	UniRef90	UniRef90_K1JXY7	ParB domain-containing protein	NA
UHGV-0144014_13	eggNOG-mapper	742823.HMPREF9465_00951	ParB-like nuclease domain	NA
UHGV-0144014_13	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0144014_13	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0144014_13	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0144014_13	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0144014_14	Structural annotation	PF06530, NF008895, COG1595	NA	NA
UHGV-0144014_15	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0144014_15	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0144014_15	UniRef90	UniRef90_A0A3B9Q6M1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0144014_15	eggNOG-mapper	279238.Saro_3008	Endodeoxyribonuclease RusA	NA
UHGV-0144014_15	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0144014_15	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0144014_15	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0144014_18	Structural annotation	COG3201	NA	NA
UHGV-0144014_21	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0144014_21	PHROG	phrog_5482	NA	unknown function
UHGV-0144014_21	UniRef90	UniRef90_A0A7U9FFB5	SF4 helicase domain-containing protein	NA
UHGV-0144014_21	eggNOG-mapper	398578.Daci_1933	DnaB-like helicase C terminal domain	NA
UHGV-0144014_21	Pfam	PF13481	AAA domain	AAA_25
UHGV-0144014_21	COG	COG0305	Replicative DNA helicase	NA
UHGV-0144014_21	Structural annotation	PF03796, MF_04154, NF004109, COG0305	NA	NA
UHGV-0144014_23	PHROG	phrog_3992	primosomal protein	DNA, RNA and nucleotide metabolism
UHGV-0144014_23	eggNOG-mapper	1201035.KE007212_gene1396	NA	NA
UHGV-0144014_23	COG	COG3756	NA	NA
UHGV-0144014_23	Structural annotation	PF01978, MF_01819, NF040939, COG5529	NA	NA
UHGV-0144014_27	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0144014_27	UniRef90	UniRef90_A0A6J5KNV3	Essential recombination function protein	NA
UHGV-0144014_27	eggNOG-mapper	1209989.TepiRe1_1126	ERF superfamily	NA
UHGV-0144014_27	Pfam	PF04404	ERF superfamily	ERF
UHGV-0144014_27	Structural annotation	PF04404, COG5055	NA	NA
UHGV-0144014_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0144014_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0144014_28	UniRef90	UniRef90_A0A7G8Z7U4	Single-stranded DNA-binding protein	NA
UHGV-0144014_28	eggNOG-mapper	75379.Tint_0071	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0144014_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0144014_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0144014_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0144014_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0144014_28	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0144014_29	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0144014_29	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0144014_37	eggNOG-mapper	742821.HMPREF9464_01810	NA	NA
UHGV-0144014_38	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0144014_38	PHROG	phrog_894	endolysin	lysis
UHGV-0144014_38	UniRef90	UniRef90_A0A3B9QA10	Peptidase_M15_3 domain-containing protein	NA
UHGV-0144014_38	eggNOG-mapper	1327968.R9ZW03_9VIRU	Peptidase M15	NA
UHGV-0144014_38	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0144014_38	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0144014_39	PHROG	phrog_199	holin	lysis
UHGV-0144014_39	UniRef90	UniRef90_UPI000A02732D	phage holin family protein	NA
UHGV-0144014_39	eggNOG-mapper	742821.HMPREF9464_01076	Bacteriophage holin family	NA
UHGV-0144014_39	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0144014_39	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0144014_39	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0144014_39	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA