UHGV-0144020

Genome information

Genome length 32,764 bps

CDS count 41

Completeness 75.80% (medium-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0144020
vOTU ID	vOTU-036325
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_414469
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.80% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.19
Jumbo phage	No

Genome content
Genome length	32,764 bps
GC content	52.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	94.48%
Average CDS length	758.56 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0144020_2	PHROG	phrog_15594	NA	unknown function
UHGV-0144020_2	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-0144020_2	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0144020_4	PHROG	phrog_22978	NA	unknown function
UHGV-0144020_4	UniRef90	UniRef90_A0A1Y4WLF7	PBECR5 domain-containing protein	NA
UHGV-0144020_4	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0144020_4	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-0144020_5	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0144020_7	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0144020_7	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0144020_7	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0144020_8	PHROG	phrog_12105	NA	unknown function
UHGV-0144020_8	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0144020_10	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0144020_10	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0144020_10	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0144020_10	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0144020_10	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0144020_11	PHROG	phrog_13908	NA	unknown function
UHGV-0144020_11	eggNOG-mapper	1321782.HMPREF1986_00346	NA	NA
UHGV-0144020_12	KOfam	K07584	NA	NA
UHGV-0144020_12	PHROG	phrog_4478	peptidase	other
UHGV-0144020_12	UniRef90	UniRef90_UPI001BB4816E	ribosomal-processing cysteine protease Prp	NA
UHGV-0144020_12	eggNOG-mapper	748224.HMPREF9436_01398	Cysteine protease Prp	NA
UHGV-0144020_12	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0144020_12	COG	COG2868	NA	NA
UHGV-0144020_12	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0144020_13	PHROG	phrog_156	portal protein	head and packaging
UHGV-0144020_13	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0144020_13	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0144020_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0144020_14	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0144020_14	UniRef90	UniRef90_A0A3C0NMI6	Terminase-like family protein	NA
UHGV-0144020_14	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0144020_14	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0144020_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-0144020_14	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0144020_15	COG	COG5484	NA	NA
UHGV-0144020_17	PHROG	phrog_25567	NA	unknown function
UHGV-0144020_17	UniRef90	UniRef90_UPI00164AED9E	helix-turn-helix domain-containing protein	NA
UHGV-0144020_17	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0144020_17	Structural annotation	NF040522, COG2944	NA	NA
UHGV-0144020_20	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0144020_20	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0144020_20	eggNOG-mapper	428125.CLOLEP_01814	COG NOG14118 non supervised orthologous group	NA
UHGV-0144020_20	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0144020_23	PHROG	phrog_2164	NA	unknown function
UHGV-0144020_24	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0144020_24	UniRef90	UniRef90_A0A3Q9RLP4	Deoxyuridine 5'-triphosphate nucleotidohydrolase family protein	NA
UHGV-0144020_24	eggNOG-mapper	1283338.Q4Z920_BPTWO	hydrolase activity	NA
UHGV-0144020_27	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0144020_27	UniRef90	UniRef90_A0A810Q0N4	Methyltransferase	NA
UHGV-0144020_27	eggNOG-mapper	1280698.AUJS01000007_gene1028	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0144020_27	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0144020_27	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0144020_27	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0144020_27	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0144020_28	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0144020_28	PHROG	phrog_30550	NA	unknown function
UHGV-0144020_28	UniRef90	UniRef90_A0A6N9PX25	Cell wall hydrolase	NA
UHGV-0144020_28	eggNOG-mapper	1519439.JPJG01000077_gene920	Cell Wall Hydrolase	NA
UHGV-0144020_28	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0144020_28	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0144020_29	PHROG	phrog_15773	NA	unknown function
UHGV-0144020_29	dbAPIS	APIS008	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	NA
UHGV-0144020_30	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0144020_30	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0144020_30	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0144020_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0144020_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0144020_31	UniRef90	UniRef90_R6IDK3	Single-stranded DNA-binding protein	NA
UHGV-0144020_31	eggNOG-mapper	1235797.C816_01960	Single-strand binding protein family	NA
UHGV-0144020_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0144020_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0144020_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0144020_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0144020_31	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0144020_32	PHROG	phrog_7566	NA	unknown function
UHGV-0144020_32	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-0144020_33	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0144020_33	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-0144020_33	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0144020_33	Structural annotation	PF05772	NA	NA
UHGV-0144020_34	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0144020_34	UniRef90	UniRef90_UPI0018AC33A4	ERF family protein	NA
UHGV-0144020_34	eggNOG-mapper	1497679.EP56_08440	ERF superfamily	NA
UHGV-0144020_34	Pfam	PF04404	ERF superfamily	ERF
UHGV-0144020_34	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0144020_35	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0144020_35	UniRef90	UniRef90_UPI00164A4E04	siphovirus Gp157 family protein	NA
UHGV-0144020_35	eggNOG-mapper	699218.HMPREF0889_0310	Siphovirus Gp157	NA
UHGV-0144020_35	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0144020_35	Structural annotation	PF05565	NA	NA
UHGV-0144020_38	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA