UHGV-0144066

Genome information

Genome length 22,756 bps

CDS count 32

Completeness 59.36% (medium-quality)

geNomad score 0.9767

Prediction confidence Confident

Genome information
Genome ID	UHGV-0144066
vOTU ID	vOTU-021197
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_430084
BioSample	SAMN05545094
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.36% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9767
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.87
Jumbo phage	No

Genome content
Genome length	22,756 bps
GC content	52.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	87.42%
Average CDS length	622.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0144066_1	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0144066_5	Structural annotation	TIGR01636	NA	NA
UHGV-0144066_6	PHROG	phrog_9529	NA	unknown function
UHGV-0144066_6	UniRef90	UniRef90_F5RN29	NA	NA
UHGV-0144066_6	eggNOG-mapper	888060.HMPREF9081_1665	DNA mismatch endonuclease Vsr	NA
UHGV-0144066_6	Pfam	PF04480	NA	DUF559
UHGV-0144066_6	COG	COG2852	Very-short-patch-repair endonuclease	NA
UHGV-0144066_6	Structural annotation	PF04480, NF007294, COG2852	NA	NA
UHGV-0144066_7	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0144066_7	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0144066_7	UniRef90	UniRef90_U2AU34	Terminase small subunit	NA
UHGV-0144066_7	eggNOG-mapper	697281.Mahau_0566	Terminase Small Subunit	NA
UHGV-0144066_7	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0144066_7	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0144066_7	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0144066_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0144066_8	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0144066_8	UniRef90	UniRef90_R6I0M1	Phage terminase large subunit PBSX family	NA
UHGV-0144066_8	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-0144066_8	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0144066_8	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0144066_8	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0144066_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-0144066_8	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0144066_9	PHROG	phrog_64	portal protein	head and packaging
UHGV-0144066_9	UniRef90	UniRef90_R6IBR5	Phage portal protein	NA
UHGV-0144066_9	eggNOG-mapper	97138.C820_00238	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0144066_9	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0144066_9	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0144066_9	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0144066_10	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0144066_10	UniRef90	UniRef90_A0A383RGF1	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0144066_10	eggNOG-mapper	1294142.CINTURNW_1685	Phage Mu protein F like protein	NA
UHGV-0144066_10	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0144066_10	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0144066_10	COG	COG2369	NA	NA
UHGV-0144066_10	Structural annotation	PF04233, PF00583, TIGR01641, NF000487, COG1246, COG2369	NA	NA
UHGV-0144066_12	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0144066_12	UniRef90	UniRef90_A0A143ZZA2	Phage minor structural protein GP20	NA
UHGV-0144066_12	eggNOG-mapper	1408437.JNJN01000045_gene593	Phage minor structural protein GP20	NA
UHGV-0144066_12	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0144066_12	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0144066_13	PHROG	phrog_283	major head protein	head and packaging
UHGV-0144066_13	UniRef90	UniRef90_A0A316RCU2	P22 coat protein	NA
UHGV-0144066_13	eggNOG-mapper	1297617.JPJD01000059_gene2633	P22 coat protein - gene protein 5	NA
UHGV-0144066_13	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0144066_13	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0144066_15	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0144066_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0144066_16	UniRef90	UniRef90_A0A7X0SF26	HK97 gp10 family phage protein	NA
UHGV-0144066_16	eggNOG-mapper	1499683.CCFF01000014_gene3905	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0144066_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0144066_16	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0144066_16	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0144066_17	Structural annotation	PF05657	NA	NA
UHGV-0144066_18	PHROG	phrog_158	major tail protein	tail
UHGV-0144066_18	UniRef90	UniRef90_R6HYI8	Major tail protein putative	NA
UHGV-0144066_18	eggNOG-mapper	1499683.CCFF01000014_gene3903	Phage tail tube protein, TTP	NA
UHGV-0144066_18	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0144066_18	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0144066_19	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0144066_19	UniRef90	UniRef90_UPI0016860472	NA	NA
UHGV-0144066_19	eggNOG-mapper	1123304.AQYA01000037_gene231	NA	NA
UHGV-0144066_19	Structural annotation	PF19591	NA	NA
UHGV-0144066_20	PHROG	phrog_2066	NA	unknown function
UHGV-0144066_20	eggNOG-mapper	1229517.AMFD01000023_gene1307	NA	NA
UHGV-0144066_21	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0144066_21	UniRef90	UniRef90_R5A122	ETS domain-containing protein	NA
UHGV-0144066_21	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-0144066_21	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0144066_21	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0144066_22	PHROG	phrog_26910	NA	unknown function
UHGV-0144066_22	eggNOG-mapper	1443122.Z958_05815	NA	NA
UHGV-0144066_23	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0144066_23	UniRef90	UniRef90_A0A1I5LA69	Putative transcriptional regulator	NA
UHGV-0144066_23	eggNOG-mapper	394503.Ccel_3173	NA	NA
UHGV-0144066_23	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0144066_23	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0144066_24	PHROG	phrog_6244	NA	unknown function
UHGV-0144066_24	eggNOG-mapper	391009.Tmel_1473	YqaJ-like viral recombinase domain	NA
UHGV-0144066_24	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0144066_25	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0144066_25	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0144066_25	UniRef90	UniRef90_D9SRC2	Helix-turn-helix domain protein	NA
UHGV-0144066_25	eggNOG-mapper	1218084.BBJK01000002_gene213	Helix-turn-helix domain	NA
UHGV-0144066_25	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0144066_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0144066_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0144066_26	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0144066_26	UniRef90	UniRef90_A0A0J1FTM4	ORF6N domain protein	NA
UHGV-0144066_26	eggNOG-mapper	764562.D7RWL7_9CAUD	DNA binding	NA
UHGV-0144066_26	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0144066_26	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0144066_27	UniRef90	UniRef90_A0A377GTD2	C1q domain-containing protein	NA
UHGV-0144066_28	PHROG	phrog_1194	NA	unknown function
UHGV-0144066_28	eggNOG-mapper	324057.Pjdr2_1553	NA	NA
UHGV-0144066_28	Pfam	PF20458	NA	DUF6711
UHGV-0144066_28	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0144066_29	PHROG	phrog_13879	NA	unknown function
UHGV-0144066_29	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-0144066_29	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0144066_32	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0144066_32	PHROG	phrog_435	endolysin	lysis
UHGV-0144066_32	eggNOG-mapper	596315.HMPREF0634_0352	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0144066_32	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0144066_32	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA