UHGV-0144076

Genome information

Genome length 25,104 bps

CDS count 27

Completeness 62.27% (medium-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-0144076
vOTU ID	vOTU-027596
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_442198
BioSample	SAMN05971649
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.08
Jumbo phage	No

Genome content
Genome length	25,104 bps
GC content	40.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	93.97%
Average CDS length	877.33 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0144076_1	PHROG	phrog_9589	endolysin	lysis
UHGV-0144076_1	UniRef90	UniRef90_R6MJZ4	Peptidase C51 domain-containing protein	NA
UHGV-0144076_1	eggNOG-mapper	457412.RSAG_00790	CHAP domain	NA
UHGV-0144076_1	Pfam	PF05257	CHAP domain	CHAP
UHGV-0144076_1	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0144076_1	Structural annotation	PF00877, TIGR02594	NA	NA
UHGV-0144076_2	PHROG	phrog_918	NA	unknown function
UHGV-0144076_2	UniRef90	UniRef90_UPI001CCDC3EB	NA	NA
UHGV-0144076_2	eggNOG-mapper	1140001.I571_01827	NA	NA
UHGV-0144076_2	Pfam	PF19791	NA	DUF6275
UHGV-0144076_2	Structural annotation	PF19791	NA	NA
UHGV-0144076_3	PHROG	phrog_774	NA	unknown function
UHGV-0144076_3	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0144076_4	PHROG	phrog_443	holin	lysis
UHGV-0144076_4	UniRef90	UniRef90_UPI000C088FD8	holin	NA
UHGV-0144076_4	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-0144076_4	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0144076_4	Structural annotation	PF16945	NA	NA
UHGV-0144076_5	PHROG	phrog_937	hemolysin	other
UHGV-0144076_6	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0144076_6	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0144076_8	UniRef90	UniRef90_R6MQV2	Tail Collar domain protein	NA
UHGV-0144076_10	UniRef90	UniRef90_A0A316P9E8	Cu_amine_oxidN1 domain-containing protein	NA
UHGV-0144076_10	eggNOG-mapper	1408422.JHYF01000017_gene1892	NA	NA
UHGV-0144076_10	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0144076_11	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0144076_11	UniRef90	UniRef90_R6MQW9	Phage minor structural protein	NA
UHGV-0144076_11	eggNOG-mapper	1304880.JAGB01000002_gene2206	Phage minor structural protein	NA
UHGV-0144076_11	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0144076_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0144076_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0144076_11	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0144076_11	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0144076_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0144076_12	UniRef90	UniRef90_R6MKV6	Phage-related protein	NA
UHGV-0144076_12	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0144076_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0144076_12	Structural annotation	PF05709, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0144076_13	KOfam	K19326	SYNE1; nesprin-1	NA
UHGV-0144076_13	PHROG	phrog_1293	tail length tape measure protein	tail
UHGV-0144076_13	UniRef90	UniRef90_A0A416CW06	Phage tail tape measure protein	NA
UHGV-0144076_13	eggNOG-mapper	536232.CLM_2046	phage tail tape measure protein	NA
UHGV-0144076_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0144076_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0144076_13	COG	COG1340	NA	NA
UHGV-0144076_13	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0144076_15	PHROG	phrog_88	major tail protein	tail
UHGV-0144076_15	UniRef90	UniRef90_A0A1C6E366	Phage major tail protein, phi13 family	NA
UHGV-0144076_15	eggNOG-mapper	1295642.H839_15928	NA	NA
UHGV-0144076_15	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0144076_15	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0144076_16	PHROG	phrog_78	tail terminator	connector
UHGV-0144076_16	Structural annotation	PF05657	NA	NA
UHGV-0144076_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0144076_17	UniRef90	UniRef90_A0A7X5KS36	HK97 gp10 family phage protein	NA
UHGV-0144076_17	eggNOG-mapper	1118063.I7ILS4_9CAUD	exonuclease activity	NA
UHGV-0144076_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0144076_17	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0144076_17	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0144076_18	eggNOG-mapper	931276.Cspa_c26940	NA	NA
UHGV-0144076_18	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0144076_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0144076_19	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0144076_19	UniRef90	UniRef90_UPI00195DE3AA	phage head-tail connector protein	NA
UHGV-0144076_19	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-0144076_19	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0144076_19	Structural annotation	PF05135	NA	NA
UHGV-0144076_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0144076_20	UniRef90	UniRef90_A0A1C6E4H6	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0144076_20	eggNOG-mapper	1123250.KB908414_gene2105	Phage capsid family	NA
UHGV-0144076_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0144076_20	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0144076_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0144076_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0144076_20	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0144076_21	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0144076_21	UniRef90	UniRef90_A0A416CVN6	NA	NA
UHGV-0144076_21	eggNOG-mapper	1123250.KB908414_gene2104	NA	NA
UHGV-0144076_21	Pfam	PF14265	NA	DUF4355
UHGV-0144076_21	Structural annotation	PF14265	NA	NA
UHGV-0144076_23	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0144076_23	UniRef90	UniRef90_A0A416CW54	Phage_Mu_F domain-containing protein	NA
UHGV-0144076_23	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0144076_23	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0144076_23	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0144076_23	COG	COG2369	NA	NA
UHGV-0144076_23	Structural annotation	PF04233, PF00583, TIGR01641, NF000487, COG1246, COG2369	NA	NA
UHGV-0144076_24	PHROG	phrog_64	portal protein	head and packaging
UHGV-0144076_24	UniRef90	UniRef90_A0A416CW21	Phage portal protein	NA
UHGV-0144076_24	eggNOG-mapper	1461246.X2KPH1_9VIRU	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0144076_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0144076_24	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0144076_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0144076_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0144076_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0144076_25	UniRef90	UniRef90_A0A416CVQ3	PBSX family phage terminase large subunit	NA
UHGV-0144076_25	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0144076_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0144076_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0144076_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0144076_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0144076_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0144076_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0144076_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0144076_26	UniRef90	UniRef90_UPI00051C2283	terminase small subunit	NA
UHGV-0144076_26	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-0144076_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0144076_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0144076_26	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0144076_27	PHROG	phrog_21498	NA	unknown function
UHGV-0144076_27	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0144076_27	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0144076_27	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA