UHGV-0144098

Genome information

Genome length 31,912 bps

CDS count 53

Completeness 74.55% (medium-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0144098
vOTU ID	vOTU-018556
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_424653
BioSample	NA
Country	Finland
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.36
Jumbo phage	No

Genome content
Genome length	31,912 bps
GC content	53.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	92.51%
Average CDS length	560.89 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0144098_1	PHROG	phrog_9804	NA	unknown function
UHGV-0144098_1	UniRef90	UniRef90_UPI0018976F94	replicative helicase loader/inhibitor	NA
UHGV-0144098_1	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0144098_1	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0144098_1	Structural annotation	PF11417	NA	NA
UHGV-0144098_2	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0144098_2	UniRef90	UniRef90_A0A533R9G2	Holliday junction endonuclease	NA
UHGV-0144098_2	eggNOG-mapper	1121438.JNJA01000001_gene2624	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-0144098_2	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0144098_2	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0144098_3	Structural annotation	PF13392, PF20987	NA	NA
UHGV-0144098_7	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0144098_7	UniRef90	UniRef90_A0A841L4D7	Radical SAM superfamily enzyme YgiQ (UPF0313 family)	NA
UHGV-0144098_7	eggNOG-mapper	742738.HMPREF9460_03770	radical SAM domain protein	NA
UHGV-0144098_7	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0144098_7	Structural annotation	PF04055, MF_01864, TIGR04072, COG0621	NA	NA
UHGV-0144098_8	UniRef90	UniRef90_UPI0012AC12CD	Lar family restriction alleviation protein	NA
UHGV-0144098_8	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-0144098_8	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0144098_9	PHROG	phrog_25732	NA	unknown function
UHGV-0144098_9	UniRef90	UniRef90_UPI001C009DC1	NA	NA
UHGV-0144098_10	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0144098_10	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0144098_10	UniRef90	UniRef90_A0A1Y4A1W6	HNH endonuclease	NA
UHGV-0144098_10	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0144098_10	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0144098_10	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0144098_10	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0144098_14	PHROG	phrog_38832	NA	unknown function
UHGV-0144098_14	eggNOG-mapper	445972.ANACOL_00165	NA	NA
UHGV-0144098_15	PHROG	phrog_22543	NA	unknown function
UHGV-0144098_15	UniRef90	UniRef90_UPI00073F9737	NA	NA
UHGV-0144098_15	COG	COG0265	Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain	NA
UHGV-0144098_16	PHROG	phrog_3301	pyrophosphatase	other
UHGV-0144098_16	eggNOG-mapper	755731.Clo1100_1151	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0144098_16	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0144098_16	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0144098_17	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0144098_17	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0144098_17	UniRef90	UniRef90_A0A8J6J3G6	Helix-turn-helix transcriptional regulator	NA
UHGV-0144098_17	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0144098_17	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0144098_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0144098_17	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0144098_18	PHROG	phrog_2412	NA	unknown function
UHGV-0144098_18	UniRef90	UniRef90_R5AAQ5	NA	NA
UHGV-0144098_18	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-0144098_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0144098_19	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0144098_19	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0144098_19	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0144098_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0144098_19	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0144098_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0144098_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0144098_19	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0144098_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0144098_21	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0144098_21	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0144098_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0144098_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0144098_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0144098_22	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0144098_22	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0144098_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0144098_22	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0144098_22	COG	COG2369	NA	NA
UHGV-0144098_22	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-0144098_23	Structural annotation	PF11607, MF_00436, NF011232, COG1923	NA	NA
UHGV-0144098_24	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0144098_24	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0144098_24	AcrCatalog	cluster_74817	NA	NA
UHGV-0144098_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0144098_25	UniRef90	UniRef90_U2SBS0	Phage capsid family protein	NA
UHGV-0144098_25	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0144098_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0144098_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0144098_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0144098_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0144098_26	UniRef90	UniRef90_A0A8J6J3F8	Cadherin-like beta sandwich domain-containing protein	NA
UHGV-0144098_26	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0144098_27	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0144098_27	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0144098_27	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0144098_28	PHROG	phrog_3366	NA	unknown function
UHGV-0144098_28	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0144098_28	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0144098_29	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0144098_29	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0144098_29	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0144098_29	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0144098_29	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0144098_30	PHROG	phrog_3266	tail completion	connector
UHGV-0144098_30	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0144098_30	Structural annotation	PF12691	NA	NA
UHGV-0144098_31	PHROG	phrog_3099	NA	unknown function
UHGV-0144098_31	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0144098_31	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0144098_32	PHROG	phrog_11299	NA	unknown function
UHGV-0144098_32	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0144098_32	Structural annotation	PF10666	NA	NA
UHGV-0144098_33	PHROG	phrog_706	NA	unknown function
UHGV-0144098_33	UniRef90	UniRef90_A0A2U1BEN4	Bacteriophage Gp15 protein	NA
UHGV-0144098_33	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0144098_33	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0144098_33	Structural annotation	PF06854	NA	NA
UHGV-0144098_34	UniRef90	UniRef90_A0A1M2ZNM7	CopG family transcriptional regulator	NA
UHGV-0144098_34	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0144098_36	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0144098_36	UniRef90	UniRef90_A0A413LWE0	ORF6N domain-containing protein	NA
UHGV-0144098_36	eggNOG-mapper	431943.CKL_3310	ORF6C domain	NA
UHGV-0144098_36	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0144098_36	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0144098_36	Structural annotation	PF10543, TIGR02681, COG3561	NA	NA
UHGV-0144098_37	eggNOG-mapper	1449050.JNLE01000003_gene423	NA	NA
UHGV-0144098_37	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0144098_37	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0144098_38	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0144098_38	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0144098_38	COG	COG1511	NA	NA
UHGV-0144098_38	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0144098_39	PHROG	phrog_1194	NA	unknown function
UHGV-0144098_39	eggNOG-mapper	693746.OBV_18200	NA	NA
UHGV-0144098_39	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0144098_40	PHROG	phrog_32744	NA	unknown function
UHGV-0144098_40	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0144098_40	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0144098_42	PHROG	phrog_24451	NA	unknown function
UHGV-0144098_42	UniRef90	UniRef90_UPI0006907379	NA	NA
UHGV-0144098_42	eggNOG-mapper	931276.Cspa_c07590	NA	NA
UHGV-0144098_43	UniRef90	UniRef90_A0A1Y3Z0U4	XkdX family protein (Fragment)	NA
UHGV-0144098_43	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0144098_44	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0144098_44	PHROG	phrog_18955	NA	unknown function
UHGV-0144098_44	UniRef90	UniRef90_UPI001F2465B3	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0144098_44	eggNOG-mapper	742738.HMPREF9460_03968	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0144098_44	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0144098_44	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0144098_44	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0144098_44	Structural annotation	PF09992, COG4632, COG5632	NA	NA
UHGV-0144098_45	eggNOG-mapper	588581.Cpap_3400	NA	NA
UHGV-0144098_46	PHROG	phrog_4105	NA	unknown function
UHGV-0144098_46	eggNOG-mapper	658655.HMPREF0988_02547	NA	NA
UHGV-0144098_47	KOfam	K07486	K07486; transposase	NA
UHGV-0144098_47	PHROG	phrog_2199	transposase	integration and excision
UHGV-0144098_47	UniRef90	UniRef90_A0A1Y4A4G5	IS110 family transposase	NA
UHGV-0144098_47	eggNOG-mapper	411471.SUBVAR_04033	PFAM transposase IS116 IS110 IS902 family protein	NA
UHGV-0144098_47	Pfam	PF01548	Transposase	DEDD_Tnp_IS110
UHGV-0144098_47	Pfam	PF02371	Transposase IS116/IS110/IS902 family	Transposase_20
UHGV-0144098_47	NCBIFam	NF033542.1	IS110 family transposase	NA
UHGV-0144098_47	COG	COG3547	Transposase	NA
UHGV-0144098_47	Structural annotation	PF01548, PF02371, MF_00651, NF033542, COG3547	NA	NA
UHGV-0144098_48	UniRef90	UniRef90_U2R3E6	KORA domain-containing protein	NA
UHGV-0144098_48	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0144098_50	PHROG	phrog_3754	NA	unknown function
UHGV-0144098_50	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0144098_51	PHROG	phrog_21718	NA	unknown function
UHGV-0144098_51	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0144098_52	PHROG	phrog_22984	NA	unknown function
UHGV-0144098_53	PHROG	phrog_16490	NA	unknown function
UHGV-0144098_53	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA