UHGV-0144240

Genome information

Genome length 21,253 bps

CDS count 27

Completeness 53.37% (medium-quality)

geNomad score 0.9725

Prediction confidence Confident

Genome information
Genome ID	UHGV-0144240
vOTU ID	vOTU-037086
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_438996
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.37% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9725
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.33
Jumbo phage	No

Genome content
Genome length	21,253 bps
GC content	50.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	90.70%
Average CDS length	715.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0144240_2	UniRef90	UniRef90_R6TP76	RHH_1 domain-containing protein	NA
UHGV-0144240_2	Structural annotation	PF01402, NF040976, COG4710	NA	NA
UHGV-0144240_5	PHROG	phrog_608	holin	lysis
UHGV-0144240_5	UniRef90	UniRef90_R6I9L8	Putative phage holin	NA
UHGV-0144240_5	eggNOG-mapper	1121472.AQWN01000009_gene420	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0144240_5	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0144240_6	PHROG	phrog_7698	endolysin	lysis
UHGV-0144240_6	UniRef90	UniRef90_R6IVV6	Possible cell wall-binding protein	NA
UHGV-0144240_6	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0144240_6	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0144240_6	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0144240_6	Structural annotation	PF08230	NA	NA
UHGV-0144240_7	PHROG	phrog_1863	NA	unknown function
UHGV-0144240_7	eggNOG-mapper	1235797.C816_02840	NA	NA
UHGV-0144240_8	PHROG	phrog_27545	NA	unknown function
UHGV-0144240_8	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-0144240_8	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-0144240_10	Structural annotation	PF02973	NA	NA
UHGV-0144240_11	Structural annotation	PF10651	NA	NA
UHGV-0144240_12	PHROG	phrog_6616	tail protein	tail
UHGV-0144240_12	UniRef90	UniRef90_A0A0J1FXD9	Peptidase S74 domain-containing protein	NA
UHGV-0144240_12	eggNOG-mapper	1294142.CINTURNW_1042	Phage minor structural protein	NA
UHGV-0144240_12	COG	COG4926	Phage-related protein	NA
UHGV-0144240_12	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0144240_13	PHROG	phrog_1194	NA	unknown function
UHGV-0144240_13	UniRef90	UniRef90_A0A0R1Q5P9	NA	NA
UHGV-0144240_13	eggNOG-mapper	1400520.LFAB_05290	NA	NA
UHGV-0144240_13	Pfam	PF20458	NA	DUF6711
UHGV-0144240_13	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0144240_14	PHROG	phrog_26910	NA	unknown function
UHGV-0144240_14	eggNOG-mapper	1117958.PE143B_0109845	NA	NA
UHGV-0144240_15	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0144240_15	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-0144240_15	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0144240_16	UniRef90	UniRef90_UPI0012BCDD8A	NA	NA
UHGV-0144240_16	eggNOG-mapper	1211844.CBLM010000016_gene1484	NA	NA
UHGV-0144240_16	Structural annotation	PF19591	NA	NA
UHGV-0144240_17	PHROG	phrog_158	major tail protein	tail
UHGV-0144240_17	UniRef90	UniRef90_R6HYI8	Major tail protein putative	NA
UHGV-0144240_17	eggNOG-mapper	1209989.TepiRe1_1157	Phage tail tube protein, TTP	NA
UHGV-0144240_17	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-0144240_17	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0144240_18	Structural annotation	PF05657	NA	NA
UHGV-0144240_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0144240_19	UniRef90	UniRef90_R6IVT6	Bacteriophage protein PF04883 family	NA
UHGV-0144240_19	eggNOG-mapper	1280692.AUJL01000025_gene2076	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0144240_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0144240_19	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0144240_19	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0144240_20	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0144240_21	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0144240_21	UniRef90	UniRef90_R6I6I7	NA	NA
UHGV-0144240_21	eggNOG-mapper	268407.PWYN_03015	NA	NA
UHGV-0144240_22	PHROG	phrog_283	major head protein	head and packaging
UHGV-0144240_22	UniRef90	UniRef90_UPI001896DBE2	P22 coat protein	NA
UHGV-0144240_22	eggNOG-mapper	1297617.JPJD01000059_gene2633	P22 coat protein - gene protein 5	NA
UHGV-0144240_22	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0144240_22	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0144240_23	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0144240_23	UniRef90	UniRef90_UPI001651708C	phage scaffolding protein	NA
UHGV-0144240_23	eggNOG-mapper	1196028.ALEF01000043_gene465	Phage minor structural protein GP20	NA
UHGV-0144240_23	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0144240_24	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0144240_24	PHROG	phrog_95	integrase	integration and excision
UHGV-0144240_24	UniRef90	UniRef90_A0A3D6BHR4	Stage V sporulation protein T	NA
UHGV-0144240_24	eggNOG-mapper	1203606.HMPREF1526_02488	Recombinase	NA
UHGV-0144240_24	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0144240_24	Pfam	PF07508	Recombinase	Recombinase
UHGV-0144240_24	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0144240_24	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0144240_24	Structural annotation	PF07508, PF00239, PF18822, NF041201, COG1961	NA	NA
UHGV-0144240_27	UniRef90	UniRef90_A0A2V2C9U9	Cell filamentation protein Fic	NA
UHGV-0144240_27	eggNOG-mapper	1203606.HMPREF1526_02487	Virulence protein RhuM family	NA
UHGV-0144240_27	Pfam	PF13310	Virulence protein RhuM family	Virulence_RhuM
UHGV-0144240_27	COG	COG3943	NA	NA
UHGV-0144240_27	Structural annotation	PF13310, TIGR02681, COG3943	NA	NA