UHGV-0144253

Genome information

vOTU vOTU-071900

Genome length 39,423 bps

CDS count 63

Completeness 97.33% (high-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-0144253
vOTU ID	vOTU-071900
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_404001
BioSample	SAMN05414927
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.33% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.89
Jumbo phage	No

Genome content
Genome length	39,423 bps
GC content	53.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	90.17%
Average CDS length	569.57 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0144253_1	PHROG	phrog_888	NA	unknown function
UHGV-0144253_1	UniRef90	UniRef90_A0A6N7TMA2	SHOCT domain-containing protein	NA
UHGV-0144253_1	eggNOG-mapper	1415774.U728_165	Short C-terminal domain	NA
UHGV-0144253_1	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0144253_1	Structural annotation	PF15947, PF14471	NA	NA
UHGV-0144253_5	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0144253_5	UniRef90	UniRef90_A0A2A7B6N3	HTH cro/C1-type domain-containing protein	NA
UHGV-0144253_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0144253_5	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0144253_6	KOfam	K14059	int; integrase	NA
UHGV-0144253_6	PHROG	phrog_1	integrase	integration and excision
UHGV-0144253_6	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0144253_6	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0144253_6	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0144253_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0144253_6	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0144253_6	Structural annotation	PF00589, PF13102, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0144253_7	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0144253_8	eggNOG-mapper	658655.HMPREF0988_00916	NA	NA
UHGV-0144253_9	PHROG	phrog_16490	NA	unknown function
UHGV-0144253_9	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0144253_14	PHROG	phrog_15303	NA	unknown function
UHGV-0144253_14	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0144253_16	KOfam	K07273	acm; lysozyme	NA
UHGV-0144253_16	PHROG	phrog_291	endolysin	lysis
UHGV-0144253_16	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0144253_16	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0144253_16	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0144253_16	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0144253_16	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0144253_19	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0144253_19	UniRef90	UniRef90_A0A2A7AM44	Prophage_tail domain-containing protein	NA
UHGV-0144253_19	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0144253_19	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0144253_19	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0144253_19	COG	COG4926	Phage-related protein	NA
UHGV-0144253_19	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0144253_20	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0144253_20	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0144253_20	eggNOG-mapper	1123315.AUIP01000014_gene1961	tail component	NA
UHGV-0144253_20	COG	COG4722	Phage-related protein YomH	NA
UHGV-0144253_20	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0144253_21	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0144253_21	UniRef90	UniRef90_A0A2A7B6K1	TMP_3 domain-containing protein	NA
UHGV-0144253_21	eggNOG-mapper	596328.HMPREF0578_1241	phage tail tape measure protein	NA
UHGV-0144253_21	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0144253_21	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0144253_21	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0144253_21	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0144253_24	PHROG	phrog_88	major tail protein	tail
UHGV-0144253_24	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0144253_24	eggNOG-mapper	349161.Dred_2600	NA	NA
UHGV-0144253_24	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0144253_24	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0144253_25	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0144253_25	eggNOG-mapper	1235798.C817_04589	NA	NA
UHGV-0144253_25	Structural annotation	TIGR01725	NA	NA
UHGV-0144253_26	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0144253_26	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0144253_27	PHROG	phrog_19734	NA	unknown function
UHGV-0144253_27	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0144253_27	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0144253_28	PHROG	phrog_749	NA	unknown function
UHGV-0144253_28	UniRef90	UniRef90_UPI0016630012	phage gp6-like head-tail connector protein	NA
UHGV-0144253_28	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-0144253_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-0144253_29	UniRef90	UniRef90_A0A2A7B712	Phage major capsid protein	NA
UHGV-0144253_29	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0144253_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0144253_29	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0144253_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0144253_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0144253_29	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0144253_30	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0144253_30	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0144253_30	UniRef90	UniRef90_UPI001C10F40E	Clp protease ClpP	NA
UHGV-0144253_30	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0144253_30	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0144253_30	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0144253_30	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0144253_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-0144253_31	UniRef90	UniRef90_A0A2A7B6S8	Phage portal protein	NA
UHGV-0144253_31	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0144253_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0144253_31	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0144253_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0144253_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0144253_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0144253_32	UniRef90	UniRef90_A0A2A7ALT4	Terminase	NA
UHGV-0144253_32	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0144253_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0144253_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0144253_32	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0144253_33	PHROG	phrog_13845	NA	unknown function
UHGV-0144253_33	eggNOG-mapper	508419.F8J158_9CAUD	NA	NA
UHGV-0144253_33	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0144253_34	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0144253_34	UniRef90	UniRef90_A0A2A7AM49	HNH endonuclease	NA
UHGV-0144253_34	eggNOG-mapper	610130.Closa_0739	HNH nucleases	NA
UHGV-0144253_34	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0144253_34	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0144253_35	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0144253_35	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0144253_35	UniRef90	UniRef90_UPI0011DC86C4	N-6 DNA methylase	NA
UHGV-0144253_35	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0144253_35	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0144253_35	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0144253_35	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0144253_35	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0144253_38	Structural annotation	PF04545	NA	NA
UHGV-0144253_39	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0144253_39	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0144253_39	UniRef90	UniRef90_A0A2A7B6Q0	ParB domain-containing protein	NA
UHGV-0144253_39	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0144253_39	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0144253_39	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0144253_39	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-0144253_40	UniRef90	UniRef90_A0A355JDC2	NA	NA
UHGV-0144253_41	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0144253_41	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0144253_41	UniRef90	UniRef90_A0A2A7B6H3	AAA_31 domain-containing protein	NA
UHGV-0144253_41	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0144253_41	Pfam	PF13614	AAA domain	AAA_31
UHGV-0144253_41	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0144253_41	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0144253_42	PHROG	phrog_6969	NA	unknown function
UHGV-0144253_42	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0144253_42	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0144253_42	Structural annotation	PF04182, MF_01819, TIGR04176, COG5625	NA	NA
UHGV-0144253_43	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0144253_43	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0144253_43	UniRef90	UniRef90_A0A2A7B6R5	Single-stranded DNA-binding protein	NA
UHGV-0144253_43	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0144253_43	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0144253_43	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0144253_43	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0144253_43	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0144253_43	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0144253_44	PHROG	phrog_7566	NA	unknown function
UHGV-0144253_44	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0144253_46	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0144253_46	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0144253_46	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0144253_47	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0144253_47	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0144253_50	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0144253_50	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0144253_58	UniRef90	UniRef90_UPI000BEF0F65	helix-turn-helix transcriptional regulator	NA
UHGV-0144253_58	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-0144253_59	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0144253_59	UniRef90	UniRef90_A0A2A7AM72	HTH cro/C1-type domain-containing protein	NA
UHGV-0144253_59	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0144253_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0144253_59	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0144253_59	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0144253_60	Structural annotation	PF21441, TIGR04176, COG1846	NA	NA