UHGV-0144275

Genome information

vOTU vOTU-019082

Genome length 33,496 bps

CDS count 45

Completeness 86.28% (medium-quality)

geNomad score 0.9702

Prediction confidence Confident

Genome information
Genome ID	UHGV-0144275
vOTU ID	vOTU-019082
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_396847
BioSample	SAMN04161030
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.28% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9702
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.32
Jumbo phage	No

Genome content
Genome length	33,496 bps
GC content	31.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	91.82%
Average CDS length	687.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0144275_1	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0144275_1	UniRef90	UniRef90_UPI00189D3C51	ORF6C domain-containing protein	NA
UHGV-0144275_1	eggNOG-mapper	1499683.CCFF01000014_gene3566	Phage regulatory protein	NA
UHGV-0144275_1	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0144275_1	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0144275_1	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0144275_1	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0144275_2	UniRef90	UniRef90_UPI0012906A75	zinc ribbon domain-containing protein	NA
UHGV-0144275_5	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0144275_5	UniRef90	UniRef90_UPI0018992ADD	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0144275_5	eggNOG-mapper	1211817.CCAT010000003_gene262	Phage replisome organizer	NA
UHGV-0144275_5	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0144275_5	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0144275_5	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0144275_5	Structural annotation	PF09681, TIGR01714, COG3756	NA	NA
UHGV-0144275_6	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0144275_6	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0144275_6	UniRef90	UniRef90_UPI00189B17E9	DNA polymerase III subunit beta	NA
UHGV-0144275_6	eggNOG-mapper	1280689.AUJC01000014_gene1727	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-0144275_6	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-0144275_6	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-0144275_6	Structural annotation	PF02767, PF02768, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0144275_7	PHROG	phrog_1974	NA	unknown function
UHGV-0144275_7	UniRef90	UniRef90_UPI00189EDC1B	nucleoid-associated protein	NA
UHGV-0144275_7	eggNOG-mapper	1280689.AUJC01000001_gene2467	37-kD nucleoid-associated bacterial protein	NA
UHGV-0144275_7	Pfam	PF04245	37-kD nucleoid-associated bacterial protein	NA37
UHGV-0144275_7	COG	COG3081	dsDNA-binding nucleoid-associated protein YejK/NdpA	NA
UHGV-0144275_7	Structural annotation	PF04245, MF_00730, NF001557, COG3081	NA	NA
UHGV-0144275_8	Structural annotation	NF009256	NA	NA
UHGV-0144275_9	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0144275_9	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0144275_9	UniRef90	UniRef90_UPI000C08AB2C	DNA cytosine methyltransferase	NA
UHGV-0144275_9	eggNOG-mapper	1211817.CCAT010000049_gene2479	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0144275_9	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0144275_9	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0144275_9	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0144275_9	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0144275_9	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0144275_13	eggNOG-mapper	1280689.AUJC01000011_gene1509	NA	NA
UHGV-0144275_14	PHROG	phrog_38492	NA	unknown function
UHGV-0144275_14	UniRef90	UniRef90_UPI00189AC004	helix-turn-helix transcriptional regulator	NA
UHGV-0144275_14	eggNOG-mapper	632245.CLP_2705	Helix-turn-helix	NA
UHGV-0144275_15	PHROG	phrog_9628	NA	unknown function
UHGV-0144275_15	UniRef90	UniRef90_UPI00189AFC52	DNA-binding response regulator	NA
UHGV-0144275_15	eggNOG-mapper	536233.CLO_0876	NA	NA
UHGV-0144275_16	PHROG	phrog_15827	NA	unknown function
UHGV-0144275_16	UniRef90	UniRef90_A0A0A7HFV1	Zn-finger containing protein	NA
UHGV-0144275_16	eggNOG-mapper	536233.CLO_0877	DNA-directed 5'-3' RNA polymerase activity	NA
UHGV-0144275_16	COG	COG1996	DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger	NA
UHGV-0144275_16	Structural annotation	PF09723, TIGR02605, COG1996	NA	NA
UHGV-0144275_17	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0144275_17	PHROG	phrog_216	integrase	integration and excision
UHGV-0144275_17	UniRef90	UniRef90_UPI00189956A8	tyrosine-type recombinase/integrase	NA
UHGV-0144275_17	eggNOG-mapper	1414720.CBYM010000001_gene692	Phage integrase family	NA
UHGV-0144275_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0144275_17	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0144275_17	Structural annotation	PF00589, MF_01807, NF040815, COG4974	NA	NA
UHGV-0144275_18	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0144275_18	UniRef90	UniRef90_A0A316MA76	Transposase	NA
UHGV-0144275_18	eggNOG-mapper	457396.CSBG_01043	transposase activity	NA
UHGV-0144275_18	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0144275_18	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0144275_18	Structural annotation	PF07141	NA	NA
UHGV-0144275_19	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0144275_19	UniRef90	UniRef90_A0A1C6JI31	HNH endonuclease	NA
UHGV-0144275_19	eggNOG-mapper	457396.CSBG_01044	HNH endonuclease	NA
UHGV-0144275_19	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0144275_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0144275_19	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0144275_20	PHROG	phrog_1066	NA	unknown function
UHGV-0144275_20	UniRef90	UniRef90_A0A316MDS1	Zinc-binding protein	NA
UHGV-0144275_20	eggNOG-mapper	1123288.SOV_2c03670	NA	NA
UHGV-0144275_20	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0144275_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0144275_21	UniRef90	UniRef90_A0A1C6JHP9	Phage terminase-like protein, large subunit	NA
UHGV-0144275_21	eggNOG-mapper	457396.CSBG_01046	Terminase	NA
UHGV-0144275_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0144275_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0144275_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0144275_21	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0144275_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-0144275_22	UniRef90	UniRef90_V9HDD3	HK97 family phage portal protein	NA
UHGV-0144275_22	eggNOG-mapper	457396.CSBG_01047	Portal protein	NA
UHGV-0144275_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0144275_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0144275_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0144275_23	KOfam	K06904	NA	NA
UHGV-0144275_23	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0144275_23	UniRef90	UniRef90_V9H369	HK97 family phage prohead protease	NA
UHGV-0144275_23	eggNOG-mapper	457396.CSBG_01048	Phage prohead protease, HK97 family	NA
UHGV-0144275_23	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0144275_23	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0144275_23	COG	COG3740	Phage head maturation protease	NA
UHGV-0144275_23	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0144275_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0144275_24	UniRef90	UniRef90_A0A316MA62	Phage major capsid protein	NA
UHGV-0144275_24	eggNOG-mapper	457396.CSBG_01049	Phage major capsid protein, HK97 family	NA
UHGV-0144275_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0144275_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0144275_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0144275_24	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0144275_25	eggNOG-mapper	457396.CSBG_01050	NA	NA
UHGV-0144275_26	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0144275_26	UniRef90	UniRef90_UPI001AE6D698	phage head closure protein	NA
UHGV-0144275_26	eggNOG-mapper	457396.CSBG_01051	head-tail adaptor	NA
UHGV-0144275_26	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0144275_26	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0144275_26	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0144275_27	UniRef90	UniRef90_A0A133N6J9	Phage protein, HK97 gp10 family	NA
UHGV-0144275_27	eggNOG-mapper	1414720.CBYM010000040_gene1650	NA	NA
UHGV-0144275_27	Structural annotation	TIGR01725	NA	NA
UHGV-0144275_28	PHROG	phrog_957	head protein	head and packaging
UHGV-0144275_28	UniRef90	UniRef90_UPI0004B43D30	NA	NA
UHGV-0144275_28	eggNOG-mapper	1414720.CBYM010000040_gene1651	NA	NA
UHGV-0144275_28	Structural annotation	PF11367, COG4722	NA	NA
UHGV-0144275_29	PHROG	phrog_885	major tail protein	tail
UHGV-0144275_29	eggNOG-mapper	1414720.CBYM010000040_gene1652	NA	NA
UHGV-0144275_29	Structural annotation	PF09393, TIGR01603, COG3498	NA	NA
UHGV-0144275_30	eggNOG-mapper	457396.CSBG_01055	NA	NA
UHGV-0144275_31	eggNOG-mapper	457396.CSBG_01056	NA	NA
UHGV-0144275_32	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0144275_32	UniRef90	UniRef90_B1BPR4	Putative phage protein	NA
UHGV-0144275_32	eggNOG-mapper	457396.CSBG_01057	tape measure	NA
UHGV-0144275_32	COG	COG5283	Phage-related tail protein	NA
UHGV-0144275_33	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0144275_33	UniRef90	UniRef90_A0A1M5TGV6	Phage-related protein	NA
UHGV-0144275_33	eggNOG-mapper	457396.CSBG_01058	phage tail	NA
UHGV-0144275_33	Pfam	PF20753	Phage tail C-terminal domain	DUF6558_C
UHGV-0144275_33	COG	COG4722	Phage-related protein YomH	NA
UHGV-0144275_33	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0144275_34	PHROG	phrog_1401	NA	unknown function
UHGV-0144275_34	UniRef90	UniRef90_UPI0018A98488	NA	NA
UHGV-0144275_34	eggNOG-mapper	1415775.U729_2617	NA	NA
UHGV-0144275_34	Structural annotation	PF07761	NA	NA
UHGV-0144275_35	PHROG	phrog_18110	NA	unknown function
UHGV-0144275_35	eggNOG-mapper	457396.CSBG_01060	Phage minor structural protein	NA
UHGV-0144275_35	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0144275_35	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0144275_35	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0144275_35	COG	COG4926	Phage-related protein	NA
UHGV-0144275_35	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0144275_36	eggNOG-mapper	1280689.AUJC01000007_gene3305	NA	NA
UHGV-0144275_38	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0144275_39	PHROG	phrog_1193	hemolysin	other
UHGV-0144275_39	UniRef90	UniRef90_UPI0018A01BEB	hemolysin XhlA family protein	NA
UHGV-0144275_39	eggNOG-mapper	318464.IO99_03750	Haemolysin XhlA	NA
UHGV-0144275_39	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0144275_40	PHROG	phrog_1129	holin	lysis
UHGV-0144275_40	UniRef90	UniRef90_UPI000DD0B747	phage holin family protein	NA
UHGV-0144275_40	eggNOG-mapper	1280692.AUJL01000004_gene827	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0144275_40	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0144275_40	Structural annotation	PF16079	NA	NA
UHGV-0144275_41	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0144275_41	PHROG	phrog_435	endolysin	lysis
UHGV-0144275_41	UniRef90	UniRef90_UPI00189CB750	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0144275_41	eggNOG-mapper	1196322.A370_04907	Cell wall hydrolase autolysin	NA
UHGV-0144275_41	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0144275_41	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0144275_41	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0144275_41	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860, COG5492	NA	NA
UHGV-0144275_42	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0144275_42	UniRef90	UniRef90_UPI001898748B	Ltp family lipoprotein	NA
UHGV-0144275_42	eggNOG-mapper	702450.CUW_1238	Host cell surface-exposed lipoprotein	NA
UHGV-0144275_42	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0144275_42	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0144275_42	Structural annotation	PF07553, MF_01114, NF001062	NA	NA
UHGV-0144275_44	PHROG	phrog_2329	NA	unknown function
UHGV-0144275_44	UniRef90	UniRef90_UPI000C089106	PemI	NA
UHGV-0144275_44	eggNOG-mapper	1292035.H476_0264	NA	NA
UHGV-0144275_44	Structural annotation	PF04014, NF008463	NA	NA
UHGV-0144275_45	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0144275_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0144275_45	UniRef90	UniRef90_UPI000DD0805E	tyrosine-type recombinase/integrase	NA
UHGV-0144275_45	eggNOG-mapper	1415774.U728_754	Belongs to the 'phage' integrase family	NA
UHGV-0144275_45	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0144275_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0144275_45	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0144275_45	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA