UHGV-0144312

Genome information

Genome length 29,891 bps

CDS count 48

Completeness 100.00% (complete)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0144312
vOTU ID	vOTU-046074
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_441029
BioSample	SAMN05971641
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.4
Jumbo phage	No

Genome content
Genome length	29,891 bps
GC content	36.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	93.90%
Average CDS length	590.19 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0144312_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0144312_1	PHROG	phrog_435	endolysin	lysis
UHGV-0144312_1	UniRef90	UniRef90_A0A829ZDB6	N-acetylmuramoyl-L-alanine amidase LytC	NA
UHGV-0144312_1	eggNOG-mapper	33035.JPJF01000090_gene96	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0144312_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0144312_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0144312_1	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860, COG5492	NA	NA
UHGV-0144312_2	PHROG	phrog_4105	NA	unknown function
UHGV-0144312_2	UniRef90	UniRef90_A0A7M4BNX2	Phage holin	NA
UHGV-0144312_2	eggNOG-mapper	1321782.HMPREF1986_02281	NA	NA
UHGV-0144312_3	PHROG	phrog_1129	holin	lysis
UHGV-0144312_3	UniRef90	UniRef90_A0A416G2E0	Enolase	NA
UHGV-0144312_3	eggNOG-mapper	693746.OBV_13280	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0144312_3	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0144312_3	Structural annotation	PF06946	NA	NA
UHGV-0144312_4	PHROG	phrog_5717	tail protein	tail
UHGV-0144312_4	eggNOG-mapper	469616.FMAG_02522	NA	NA
UHGV-0144312_5	PHROG	phrog_9886	NA	unknown function
UHGV-0144312_5	UniRef90	UniRef90_A0A415N138	Peptidase S74 domain-containing protein	NA
UHGV-0144312_5	eggNOG-mapper	1120933.ATUY01000004_gene1009	Prophage endopeptidase tail	NA
UHGV-0144312_5	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0144312_5	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0144312_5	COG	COG4926	Phage-related protein	NA
UHGV-0144312_5	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0144312_6	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0144312_6	UniRef90	UniRef90_A0A374E6F6	MtfA protein	NA
UHGV-0144312_6	eggNOG-mapper	610130.Closa_0753	phage tail	NA
UHGV-0144312_6	COG	COG4722	Phage-related protein YomH	NA
UHGV-0144312_6	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0144312_7	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0144312_7	UniRef90	UniRef90_UPI001CC012E9	phage tail protein	NA
UHGV-0144312_7	eggNOG-mapper	936375.HMPREF1152_0688	nuclear chromosome segregation	NA
UHGV-0144312_7	COG	COG1511	NA	NA
UHGV-0144312_8	PHROG	phrog_1633	NA	unknown function
UHGV-0144312_8	UniRef90	UniRef90_UPI001374D77E	NA	NA
UHGV-0144312_8	eggNOG-mapper	908337.HMPREF9257_0530	NA	NA
UHGV-0144312_8	Pfam	PF17318	NA	DUF5361
UHGV-0144312_8	Structural annotation	PF17318	NA	NA
UHGV-0144312_9	PHROG	phrog_1526	NA	unknown function
UHGV-0144312_9	eggNOG-mapper	883110.HMPREF9260_00652	NA	NA
UHGV-0144312_10	PHROG	phrog_117	major tail protein	tail
UHGV-0144312_10	UniRef90	UniRef90_A0A6N8H024	Phage tail protein	NA
UHGV-0144312_10	eggNOG-mapper	1121864.OMO_02158	domain, Protein	NA
UHGV-0144312_10	COG	COG5492	NA	NA
UHGV-0144312_10	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0144312_11	PHROG	phrog_123	tail terminator	connector
UHGV-0144312_11	UniRef90	UniRef90_F3MWA9	NA	NA
UHGV-0144312_11	eggNOG-mapper	1423775.BAMN01000011_gene599	NA	NA
UHGV-0144312_11	Structural annotation	PF06141	NA	NA
UHGV-0144312_12	eggNOG-mapper	875454.BAEW01000017_gene1592	NA	NA
UHGV-0144312_13	PHROG	phrog_501	head closure Hc1	connector
UHGV-0144312_13	UniRef90	UniRef90_Q7Y4I1	Gp43	NA
UHGV-0144312_13	eggNOG-mapper	157924.Q7Y4I1_9CAUD	NA	NA
UHGV-0144312_13	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0144312_14	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0144312_14	UniRef90	UniRef90_J5WG12	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0144312_14	eggNOG-mapper	936375.HMPREF1152_0681	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0144312_14	Pfam	PF09355	NA	Phage_Gp19
UHGV-0144312_14	Structural annotation	PF09355	NA	NA
UHGV-0144312_15	PHROG	phrog_32396	NA	unknown function
UHGV-0144312_15	UniRef90	UniRef90_A0A496NZ36	Phage major capsid protein	NA
UHGV-0144312_15	eggNOG-mapper	938288.HG326226_gene862	Phage capsid family	NA
UHGV-0144312_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0144312_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0144312_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0144312_16	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0144312_16	UniRef90	UniRef90_A0A0X8USY7	Phage scaffold protein	NA
UHGV-0144312_16	eggNOG-mapper	585203.SMSK564_1285	NA	NA
UHGV-0144312_16	Pfam	PF14265	NA	DUF4355
UHGV-0144312_16	Structural annotation	PF14265	NA	NA
UHGV-0144312_17	PHROG	phrog_17688	NA	unknown function
UHGV-0144312_17	UniRef90	UniRef90_UPI001960D3D4	terminase large subunit	NA
UHGV-0144312_17	eggNOG-mapper	1280698.AUJS01000007_gene1036	phage terminase, large subunit	NA
UHGV-0144312_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0144312_17	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0144312_18	PHROG	phrog_3675	NA	unknown function
UHGV-0144312_18	UniRef90	UniRef90_UPI001C6F00AA	YjcQ family protein	NA
UHGV-0144312_18	eggNOG-mapper	35241.Q9AYW8_BPTU2	YjcQ protein	NA
UHGV-0144312_18	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0144312_18	Structural annotation	PF09639, TIGR04176, COG1695	NA	NA
UHGV-0144312_19	Structural annotation	PF11344	NA	NA
UHGV-0144312_20	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0144312_20	UniRef90	UniRef90_A0A822QEM3	Gp35	NA
UHGV-0144312_20	eggNOG-mapper	1214184.ALKY01000039_gene923	NA	NA
UHGV-0144312_20	Structural annotation	PF18451	NA	NA
UHGV-0144312_21	PHROG	phrog_104	portal protein	head and packaging
UHGV-0144312_21	UniRef90	UniRef90_A0A4R6QD01	SPP1 Gp6-like portal protein	NA
UHGV-0144312_21	eggNOG-mapper	1232446.BAIE02000011_gene1602	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0144312_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0144312_22	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0144312_22	UniRef90	UniRef90_M1PFG7	Putative HNH endonuclease	NA
UHGV-0144312_22	eggNOG-mapper	1289597.M1PFG7_9CAUD	endonuclease activity	NA
UHGV-0144312_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0144312_22	Structural annotation	PF01844	NA	NA
UHGV-0144312_23	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0144312_24	PHROG	phrog_6721	NA	unknown function
UHGV-0144312_24	eggNOG-mapper	428125.CLOLEP_01387	NA	NA
UHGV-0144312_24	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0144312_25	PHROG	phrog_7566	NA	unknown function
UHGV-0144312_25	UniRef90	UniRef90_UPI000E542A38	phosphoenolpyruvate carboxykinase	NA
UHGV-0144312_26	PHROG	phrog_9804	NA	unknown function
UHGV-0144312_26	UniRef90	UniRef90_A0A412RQW3	Inhibitor_G39P domain-containing protein	NA
UHGV-0144312_26	eggNOG-mapper	903814.ELI_3550	Loader and inhibitor of phage G40P	NA
UHGV-0144312_26	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0144312_26	Structural annotation	PF11417	NA	NA
UHGV-0144312_27	PHROG	phrog_236	nucleotide kinase	other
UHGV-0144312_27	UniRef90	UniRef90_A0A412RQV8	NA	NA
UHGV-0144312_27	eggNOG-mapper	411473.RUMCAL_00920	NA	NA
UHGV-0144312_27	Pfam	PF11753	NA	DUF3310
UHGV-0144312_28	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0144312_28	UniRef90	UniRef90_A0A1J0GJL7	Phage_rep_org_N domain-containing protein	NA
UHGV-0144312_28	eggNOG-mapper	469616.FMAG_00583	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0144312_28	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0144312_28	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0144312_28	Structural annotation	PF09681, PF09524, TIGR01714, TIGR02220, COG0640	NA	NA
UHGV-0144312_29	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0144312_29	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0144312_29	UniRef90	UniRef90_R7FGZ0	Gp63	NA
UHGV-0144312_29	eggNOG-mapper	1120985.AUMI01000019_gene2247	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0144312_29	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0144312_29	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0144312_30	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0144312_30	eggNOG-mapper	508419.F8J186_9CAUD	NA	NA
UHGV-0144312_30	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0144312_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0144312_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0144312_31	UniRef90	UniRef90_A0A1I6JG45	Single-stranded DNA-binding protein	NA
UHGV-0144312_31	eggNOG-mapper	1280688.AUJB01000009_gene1658	Single-strand binding protein family	NA
UHGV-0144312_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0144312_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0144312_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0144312_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0144312_31	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0144312_33	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0144312_33	UniRef90	UniRef90_A0A843HPP6	PD-(D/E)XK nuclease family protein	NA
UHGV-0144312_33	eggNOG-mapper	1399942.U3PDT7_9CAUD	nuclease activity	NA
UHGV-0144312_33	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0144312_34	PHROG	phrog_6244	NA	unknown function
UHGV-0144312_34	eggNOG-mapper	508419.F8J183_9CAUD	NA	NA
UHGV-0144312_34	Structural annotation	PF05565	NA	NA
UHGV-0144312_36	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0144312_36	UniRef90	UniRef90_UPI001B0DFF6D	ERF family protein	NA
UHGV-0144312_36	eggNOG-mapper	1139219.I569_01405	ERF superfamily	NA
UHGV-0144312_36	Pfam	PF04404	ERF superfamily	ERF
UHGV-0144312_36	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0144312_39	PHROG	phrog_2164	NA	unknown function
UHGV-0144312_41	PHROG	phrog_14105	NA	unknown function
UHGV-0144312_41	UniRef90	UniRef90_A0A373VVH4	PPE family protein	NA
UHGV-0144312_41	eggNOG-mapper	97138.C820_00368	PPE family	NA
UHGV-0144312_41	Pfam	PF01469	Pentapeptide repeats (8 copies)	Pentapeptide_2
UHGV-0144312_41	COG	COG5651	PPE-repeat protein	NA
UHGV-0144312_42	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0144312_42	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0144312_42	UniRef90	UniRef90_A0A837IUF8	Toxin-antitoxin system, toxin component, Bro family	NA
UHGV-0144312_42	eggNOG-mapper	887325.HMPREF0381_0355	Phage antirepressor protein KilAC domain	NA
UHGV-0144312_42	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0144312_42	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0144312_42	COG	COG3617	Prophage antirepressor	NA
UHGV-0144312_42	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0144312_43	UniRef90	UniRef90_UPI000E52936A	helix-turn-helix domain-containing protein	NA
UHGV-0144312_43	eggNOG-mapper	1029718.SFBM_0092	NA	NA
UHGV-0144312_43	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0144312_44	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0144312_44	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0144312_44	UniRef90	UniRef90_C6LG10	Putative repressor LexA	NA
UHGV-0144312_44	eggNOG-mapper	478749.BRYFOR_07570	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0144312_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0144312_44	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0144312_44	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0144312_44	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0144312_45	eggNOG-mapper	1408322.JHYK01000035_gene11	Metallo-beta-lactamase superfamily	NA
UHGV-0144312_45	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0144312_46	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0144312_46	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0144312_46	UniRef90	UniRef90_A0A7X6VEC6	Repressor LexA	NA
UHGV-0144312_46	eggNOG-mapper	572479.Hprae_1030	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0144312_46	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0144312_46	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0144312_46	Structural annotation	PF00717, NF007621	NA	NA
UHGV-0144312_47	UniRef90	UniRef90_A0A0Z8IAV1	Membrane protein	NA
UHGV-0144312_48	KOfam	K14059	int; integrase	NA
UHGV-0144312_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0144312_48	UniRef90	UniRef90_A0A143XPJ0	Tyrosine recombinase XerD	NA
UHGV-0144312_48	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0144312_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0144312_48	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0144312_48	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA