UHGV-0144414

Genome information

Genome length 37,038 bps

CDS count 54

Completeness 97.20% (high-quality)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-0144414
vOTU ID	vOTU-061208
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_394893
BioSample	SAMN04436780
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.20% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	34
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	85.2
Jumbo phage	No

Genome content
Genome length	37,038 bps
GC content	35.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.92%
Average CDS length	640.22 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0144414_1	KOfam	K14059	int; integrase	NA
UHGV-0144414_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0144414_1	UniRef90	UniRef90_V7ZL34	Toxin PIN	NA
UHGV-0144414_1	eggNOG-mapper	208596.CAR_c08850	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0144414_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0144414_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0144414_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0144414_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0144414_1	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0144414_2	PHROG	phrog_7724	NA	unknown function
UHGV-0144414_3	PHROG	phrog_806	NA	unknown function
UHGV-0144414_3	UniRef90	UniRef90_V7ZJ83	NA	NA
UHGV-0144414_3	eggNOG-mapper	1158607.UAU_02783	NA	NA
UHGV-0144414_3	Pfam	PF11611	NA	DUF4352
UHGV-0144414_3	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0144414_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0144414_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0144414_4	UniRef90	UniRef90_A0A7H4KVP8	LexA repressor	NA
UHGV-0144414_4	eggNOG-mapper	1139219.I569_01413	Peptidase S24-like	NA
UHGV-0144414_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0144414_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0144414_4	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0144414_4	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-0144414_5	UniRef90	UniRef90_V7ZP21	XRE family transcriptional regulator	NA
UHGV-0144414_5	eggNOG-mapper	1140001.I571_01122	NA	NA
UHGV-0144414_5	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0144414_6	PHROG	phrog_17173	NA	unknown function
UHGV-0144414_6	UniRef90	UniRef90_V7ZTD6	XRE family transcriptional regulator (Fragment)	NA
UHGV-0144414_7	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0144414_7	UniRef90	UniRef90_A0A640NQ81	Antirepressor	NA
UHGV-0144414_7	eggNOG-mapper	1300150.EMQU_2524	ORF6C domain	NA
UHGV-0144414_7	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0144414_7	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0144414_7	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0144414_7	Structural annotation	PF10552, PF10543, TIGR02681, COG3646	NA	NA
UHGV-0144414_8	PHROG	phrog_1655	NA	unknown function
UHGV-0144414_8	eggNOG-mapper	1300150.EMQU_2298	NA	NA
UHGV-0144414_9	PHROG	phrog_1270	NA	unknown function
UHGV-0144414_10	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0144414_10	UniRef90	UniRef90_A0A376L5B1	NA	NA
UHGV-0144414_10	eggNOG-mapper	1158607.UAU_01006	NA	NA
UHGV-0144414_11	PHROG	phrog_1029	NA	unknown function
UHGV-0144414_11	UniRef90	UniRef90_A0A376H043	NA	NA
UHGV-0144414_11	eggNOG-mapper	1158607.UAU_01007	NA	NA
UHGV-0144414_11	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0144414_12	PHROG	phrog_4690	NA	unknown function
UHGV-0144414_12	eggNOG-mapper	565664.EFXG_02681	NA	NA
UHGV-0144414_13	PHROG	phrog_21427	NA	unknown function
UHGV-0144414_14	PHROG	phrog_5100	NA	unknown function
UHGV-0144414_15	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0144414_15	UniRef90	UniRef90_A0A2S7M5R4	Single-stranded DNA-binding protein	NA
UHGV-0144414_15	eggNOG-mapper	663241.C9E2M9_9CAUD	ERF superfamily	NA
UHGV-0144414_15	Pfam	PF04404	ERF superfamily	ERF
UHGV-0144414_16	PHROG	phrog_674	NA	unknown function
UHGV-0144414_16	UniRef90	UniRef90_UPI001CF35DC8	NA	NA
UHGV-0144414_16	eggNOG-mapper	663241.C9E2N0_9CAUD	NA	NA
UHGV-0144414_16	Pfam	PF07083	NA	DUF1351
UHGV-0144414_16	Structural annotation	PF07083	NA	NA
UHGV-0144414_17	PHROG	phrog_398	NA	unknown function
UHGV-0144414_17	UniRef90	UniRef90_UPI000DEBC8E3	putative HNHc nuclease	NA
UHGV-0144414_17	eggNOG-mapper	663241.C9E2N1_9CAUD	Pfam:HNHc_6	NA
UHGV-0144414_17	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0144414_17	Structural annotation	PF16784	NA	NA
UHGV-0144414_18	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0144414_18	UniRef90	UniRef90_U6RYZ1	Phage replisome organizer protein	NA
UHGV-0144414_18	eggNOG-mapper	1158604.I591_00387	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0144414_18	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0144414_18	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0144414_18	Structural annotation	PF09681, TIGR01714, COG1321	NA	NA
UHGV-0144414_19	PHROG	phrog_154	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0144414_19	UniRef90	UniRef90_A0A7G8ZYV2	NA	NA
UHGV-0144414_19	eggNOG-mapper	1140001.I571_01721	NA	NA
UHGV-0144414_19	Structural annotation	PF17399	NA	NA
UHGV-0144414_20	PHROG	phrog_28554	MazG-like pyrophosphatase	other
UHGV-0144414_20	UniRef90	UniRef90_R3H4X5	MazG domain-containing protein	NA
UHGV-0144414_20	eggNOG-mapper	673832.D2IYU1_9CAUD	sequence-specific DNA binding	NA
UHGV-0144414_20	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0144414_20	Structural annotation	PF12643, MF_01020, NF001613, COG0140	NA	NA
UHGV-0144414_21	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0144414_21	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0144414_21	UniRef90	UniRef90_A0A125W4C7	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0144414_21	eggNOG-mapper	226185.EF_2128	Endodeoxyribonuclease RusA	NA
UHGV-0144414_21	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0144414_21	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0144414_21	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0144414_22	PHROG	phrog_1799	NA	unknown function
UHGV-0144414_22	eggNOG-mapper	1158604.I591_01784	NA	NA
UHGV-0144414_23	PHROG	phrog_9838	NA	unknown function
UHGV-0144414_24	PHROG	phrog_2882	DNA methyltransferase	other
UHGV-0144414_24	UniRef90	UniRef90_UPI0018E8AFA7	DNA methyltransferase	NA
UHGV-0144414_24	eggNOG-mapper	1231377.C426_1711	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0144414_24	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0144414_24	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0144414_24	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0144414_25	PHROG	phrog_1071	DNA methyltransferase	other
UHGV-0144414_25	UniRef90	UniRef90_UPI000A409F0A	N-6 DNA methylase	NA
UHGV-0144414_25	eggNOG-mapper	1154757.Q5C_05955	COG0286 Type I restriction-modification system methyltransferase subunit	NA
UHGV-0144414_25	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0144414_25	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0144414_26	PHROG	phrog_121	NA	unknown function
UHGV-0144414_26	UniRef90	UniRef90_UPI00044EC749	NA	NA
UHGV-0144414_26	eggNOG-mapper	673832.D2IYV1_9CAUD	NA	NA
UHGV-0144414_26	Pfam	PF07852	NA	DUF1642
UHGV-0144414_26	Structural annotation	PF07852	NA	NA
UHGV-0144414_27	PHROG	phrog_1335	NA	unknown function
UHGV-0144414_28	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0144414_28	UniRef90	UniRef90_D2IZS6	Transcriptional regulator	NA
UHGV-0144414_28	eggNOG-mapper	1201292.DR75_1521	ArpU family	NA
UHGV-0144414_28	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0144414_28	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-0144414_29	PHROG	phrog_1244	NA	unknown function
UHGV-0144414_30	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0144414_30	UniRef90	UniRef90_E6I926	ParB-like protein	NA
UHGV-0144414_30	eggNOG-mapper	663241.C9E2P7_9CAUD	N-methyltransferase activity	NA
UHGV-0144414_30	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0144414_30	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0144414_30	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0144414_31	KOfam	K21527	mom; adenine modification enzyme [EC:2.3.1.-]	NA
UHGV-0144414_31	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0144414_31	UniRef90	UniRef90_A0A410WKW7	Protein Mom	NA
UHGV-0144414_31	eggNOG-mapper	663241.C9E2P8_9CAUD	NA	NA
UHGV-0144414_31	Structural annotation	PF16092, MF_02210, NF007025, COG0456	NA	NA
UHGV-0144414_32	PHROG	phrog_1476	NA	unknown function
UHGV-0144414_32	UniRef90	UniRef90_A8ATN7	Gp79	NA
UHGV-0144414_32	eggNOG-mapper	1158609.I586_00075	NA	NA
UHGV-0144414_33	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0144414_33	UniRef90	UniRef90_A0A7Z8WRG2	Small subunit of terminase	NA
UHGV-0144414_33	eggNOG-mapper	673832.D2IYW0_9CAUD	DNA packaging	NA
UHGV-0144414_33	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0144414_33	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0144414_33	Structural annotation	PF10668, NF040601, COG5484	NA	NA
UHGV-0144414_34	PHROG	phrog_29775	NA	unknown function
UHGV-0144414_34	UniRef90	UniRef90_U6S3B8	Phage terminase, large subunit, PBSX family	NA
UHGV-0144414_34	eggNOG-mapper	1229517.AMFD01000018_gene188	Phage terminase, large subunit, PBSX family	NA
UHGV-0144414_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0144414_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0144414_34	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0144414_35	PHROG	phrog_533	portal protein	head and packaging
UHGV-0144414_35	UniRef90	UniRef90_A0A2N8PYJ9	Phage portal protein	NA
UHGV-0144414_35	eggNOG-mapper	1158601.I585_01160	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0144414_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0144414_35	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0144414_35	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0144414_36	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0144414_36	UniRef90	UniRef90_A0A7Z8WPA9	Capsid protein	NA
UHGV-0144414_36	eggNOG-mapper	1158601.I585_01158	Phage minor capsid protein 2	NA
UHGV-0144414_36	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0144414_36	COG	COG2369	NA	NA
UHGV-0144414_36	Structural annotation	PF06152	NA	NA
UHGV-0144414_37	PHROG	phrog_918	NA	unknown function
UHGV-0144414_37	UniRef90	UniRef90_UPI000FFEACEB	NA	NA
UHGV-0144414_37	eggNOG-mapper	272626.lin0103	NA	NA
UHGV-0144414_37	Pfam	PF19791	NA	DUF6275
UHGV-0144414_37	Structural annotation	PF19791	NA	NA
UHGV-0144414_38	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0144414_38	UniRef90	UniRef90_V7ZRB5	Capsid protein	NA
UHGV-0144414_38	eggNOG-mapper	768486.EHR_02625	Phage minor structural protein GP20	NA
UHGV-0144414_38	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0144414_38	Structural annotation	PF06810	NA	NA
UHGV-0144414_39	PHROG	phrog_422	major head protein	head and packaging
UHGV-0144414_39	UniRef90	UniRef90_V7ZS76	Capsid protein	NA
UHGV-0144414_39	eggNOG-mapper	1158601.I585_01156	NA	NA
UHGV-0144414_39	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0144414_40	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0144414_40	UniRef90	UniRef90_I6SVS1	Protein gp8	NA
UHGV-0144414_40	eggNOG-mapper	1234679.BN424_2621	NA	NA
UHGV-0144414_41	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0144414_41	UniRef90	UniRef90_A0A4S2CEY0	Minor capsid protein	NA
UHGV-0144414_41	eggNOG-mapper	768486.EHR_02605	Minor capsid protein	NA
UHGV-0144414_41	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0144414_41	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0144414_42	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0144414_42	UniRef90	UniRef90_V7ZQV6	Capsid protein	NA
UHGV-0144414_42	eggNOG-mapper	1158601.I585_01153	Minor capsid protein	NA
UHGV-0144414_42	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0144414_42	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0144414_43	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0144414_43	UniRef90	UniRef90_V7ZRB1	Capsid protein	NA
UHGV-0144414_43	eggNOG-mapper	1158601.I585_01152	Minor capsid protein from bacteriophage	NA
UHGV-0144414_43	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0144414_43	Structural annotation	PF12691	NA	NA
UHGV-0144414_44	PHROG	phrog_820	major tail protein	tail
UHGV-0144414_44	UniRef90	UniRef90_A0A8I1FBJ6	Phage tail protein	NA
UHGV-0144414_44	eggNOG-mapper	1158601.I585_01151	NA	NA
UHGV-0144414_44	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0144414_45	PHROG	phrog_341	major tail protein	tail
UHGV-0144414_45	UniRef90	UniRef90_UPI000A191C1D	phage tail protein	NA
UHGV-0144414_45	eggNOG-mapper	1486428.A0A097BY60_9CAUD	peptidase activity	NA
UHGV-0144414_45	Structural annotation	PF02368, MF_04116, TIGR04225, COG5492	NA	NA
UHGV-0144414_46	PHROG	phrog_1061	NA	unknown function
UHGV-0144414_46	eggNOG-mapper	1158601.I585_01150	NA	NA
UHGV-0144414_46	Structural annotation	PF10666	NA	NA
UHGV-0144414_47	PHROG	phrog_706	NA	unknown function
UHGV-0144414_47	UniRef90	UniRef90_A0A828QPX0	Bacteriophage Gp15 protein	NA
UHGV-0144414_47	eggNOG-mapper	1158601.I585_01149	Bacteriophage Gp15 protein	NA
UHGV-0144414_47	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0144414_47	Structural annotation	PF06854	NA	NA
UHGV-0144414_48	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0144414_48	UniRef90	UniRef90_A0A7Z8WRF8	Phage tail tape measure protein	NA
UHGV-0144414_48	eggNOG-mapper	1140003.I573_01294	phage tail tape measure protein	NA
UHGV-0144414_48	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0144414_48	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0144414_48	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0144414_48	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0144414_49	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0144414_49	UniRef90	UniRef90_V7ZMX6	Phage tail protein	NA
UHGV-0144414_49	eggNOG-mapper	1158601.I585_01147	phage tail	NA
UHGV-0144414_49	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0144414_49	COG	COG4722	Phage-related protein YomH	NA
UHGV-0144414_49	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0144414_50	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0144414_50	UniRef90	UniRef90_UPI0010F85B65	phage tail protein	NA
UHGV-0144414_50	eggNOG-mapper	1158601.I585_01146	Prophage endopeptidase tail	NA
UHGV-0144414_50	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0144414_50	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0144414_50	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0144414_50	COG	COG4926	Phage-related protein	NA
UHGV-0144414_51	PHROG	phrog_1665	NA	unknown function
UHGV-0144414_51	UniRef90	UniRef90_UPI001371D1DB	BppU family phage baseplate upper protein	NA
UHGV-0144414_51	eggNOG-mapper	673832.D2IYX9_9CAUD	NA	NA
UHGV-0144414_51	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0144414_52	PHROG	phrog_199	holin	lysis
UHGV-0144414_52	UniRef90	UniRef90_A0A097BY69	Holin	NA
UHGV-0144414_52	eggNOG-mapper	1486428.A0A097BY69_9CAUD	Pfam:Phage_holin_4_1	NA
UHGV-0144414_52	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0144414_52	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0144414_53	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0144414_53	PHROG	phrog_670	endolysin	lysis
UHGV-0144414_53	UniRef90	UniRef90_A0A097BY70	Lysin	NA
UHGV-0144414_53	eggNOG-mapper	1486428.A0A097BY70_9CAUD	peptidoglycan catabolic process	NA
UHGV-0144414_53	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0144414_53	Structural annotation	PF01510, MF_04111, COG5632	NA	NA
UHGV-0144414_54	PHROG	phrog_15227	NA	unknown function
UHGV-0144414_54	eggNOG-mapper	1260356.D920_00326	NA	NA
UHGV-0144414_54	Structural annotation	PF01336, MF_00720, NF005579, COG0629	NA	NA