UHGV-0144565

Genome information

Genome length 21,948 bps

CDS count 41

Completeness 61.44% (medium-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0144565
vOTU ID	vOTU-023320
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_428001
BioSample	NA
Country	Finland
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.44% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	34
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	71.44
Jumbo phage	No

Genome content
Genome length	21,948 bps
GC content	41.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	92.53%
Average CDS length	497.34 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0144565_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0144565_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0144565_1	UniRef90	UniRef90_A0A4Q1QW34	Helix-turn-helix family protein	NA
UHGV-0144565_1	eggNOG-mapper	1314.HKU360_01261	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0144565_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0144565_1	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0144565_1	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0144565_2	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0144565_2	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0144565_2	UniRef90	UniRef90_A0A116MXB4	Phage antirepressor protein	NA
UHGV-0144565_2	eggNOG-mapper	1095737.HMPREF1110_1196	AntA/AntB antirepressor	NA
UHGV-0144565_2	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0144565_2	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0144565_2	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0144565_2	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0144565_3	PHROG	phrog_3624	NA	unknown function
UHGV-0144565_4	PHROG	phrog_1456	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0144565_4	UniRef90	UniRef90_A0A0Z8KF31	Phage replication protein	NA
UHGV-0144565_4	eggNOG-mapper	997830.HMPREF1124_0572	NA	NA
UHGV-0144565_4	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0144565_4	Structural annotation	PF02002, MF_01909, NF040582, COG5625	NA	NA
UHGV-0144565_5	PHROG	phrog_3819	NA	unknown function
UHGV-0144565_6	PHROG	phrog_8196	NA	unknown function
UHGV-0144565_7	PHROG	phrog_4614	NA	unknown function
UHGV-0144565_8	PHROG	phrog_2553	NA	unknown function
UHGV-0144565_9	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0144565_9	UniRef90	UniRef90_A0A426G638	Phage recombination protein Bet	NA
UHGV-0144565_9	eggNOG-mapper	1289598.M1PFN1_9CAUD	DNA metabolic process	NA
UHGV-0144565_9	Pfam	PF03837	RecT family	RecT
UHGV-0144565_9	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0144565_9	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0144565_10	PHROG	phrog_674	NA	unknown function
UHGV-0144565_10	UniRef90	UniRef90_A0A123TVR2	NA	NA
UHGV-0144565_10	eggNOG-mapper	1314.HKU360_00766	NA	NA
UHGV-0144565_10	Pfam	PF07083	NA	DUF1351
UHGV-0144565_10	Structural annotation	PF07083	NA	NA
UHGV-0144565_11	PHROG	phrog_4027	NA	unknown function
UHGV-0144565_12	PHROG	phrog_4667	NA	unknown function
UHGV-0144565_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0144565_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0144565_13	UniRef90	UniRef90_A0A0Z8KG27	Single-stranded DNA-binding protein	NA
UHGV-0144565_13	eggNOG-mapper	1277891.M1IR68_9CAUD	single-stranded DNA binding	NA
UHGV-0144565_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0144565_13	NCBIFam	NF005580.0	single-stranded DNA-binding protein	NA
UHGV-0144565_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0144565_13	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0144565_14	PHROG	phrog_21494	NA	unknown function
UHGV-0144565_15	PHROG	phrog_6041	NA	unknown function
UHGV-0144565_16	PHROG	phrog_1341	NA	unknown function
UHGV-0144565_16	UniRef90	UniRef90_A0A0Y3MU61	NA	NA
UHGV-0144565_16	eggNOG-mapper	997830.HMPREF1124_0584	NA	NA
UHGV-0144565_17	PHROG	phrog_827	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0144565_17	UniRef90	UniRef90_UPI0013FD8A22	crossover junction endodeoxyribonuclease RuvC	NA
UHGV-0144565_17	Pfam	PF07066	Lactococcus phage M3 protein	DUF3882
UHGV-0144565_17	Structural annotation	PF07066, MF_00034, NF000711, COG0817	NA	NA
UHGV-0144565_18	PHROG	phrog_884	NA	unknown function
UHGV-0144565_18	UniRef90	UniRef90_A0A4U9Z0R5	NA	NA
UHGV-0144565_18	Pfam	PF07116	NA	DUF1372
UHGV-0144565_18	Structural annotation	PF07116	NA	NA
UHGV-0144565_19	PHROG	phrog_3972	NA	unknown function
UHGV-0144565_19	UniRef90	UniRef90_A0A380K655	Prophage Pi3 protein	NA
UHGV-0144565_19	eggNOG-mapper	365659.smi_0430	NA	NA
UHGV-0144565_19	dbAPIS	APIS035	Broad-spectrum counter-defense.	NA
UHGV-0144565_20	PHROG	phrog_24146	NA	unknown function
UHGV-0144565_21	PHROG	phrog_4455	NA	unknown function
UHGV-0144565_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0144565_22	UniRef90	UniRef90_A0A0E3WEJ3	NA	NA
UHGV-0144565_22	eggNOG-mapper	1214217.ALNF01000014_gene1384	NA	NA
UHGV-0144565_22	Pfam	PF07374	NA	DUF1492
UHGV-0144565_22	Structural annotation	PF07374, TIGR01636, COG2739	NA	NA
UHGV-0144565_23	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0144565_23	UniRef90	UniRef90_A0A0E4CTN9	Phage terminase small subunit	NA
UHGV-0144565_23	eggNOG-mapper	1035189.HMPREF9954_0301	DNA packaging	NA
UHGV-0144565_23	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0144565_23	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0144565_23	COG	COG5484	NA	NA
UHGV-0144565_23	Structural annotation	PF10668, PF01920, NF040601, COG5484	NA	NA
UHGV-0144565_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0144565_24	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0144565_24	UniRef90	UniRef90_G5KEP9	Phage terminase, large subunit, PBSX family	NA
UHGV-0144565_24	eggNOG-mapper	764291.STRUR_2108	Phage terminase, large subunit	NA
UHGV-0144565_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0144565_24	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0144565_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0144565_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0144565_24	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0144565_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0144565_25	UniRef90	UniRef90_A0A0Z8KGH7	Minor capsid protein	NA
UHGV-0144565_25	eggNOG-mapper	764291.STRUR_2107	portal protein	NA
UHGV-0144565_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0144565_25	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0144565_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0144565_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0144565_26	UniRef90	UniRef90_A0A0E4H3D0	Minor capsid protein	NA
UHGV-0144565_26	eggNOG-mapper	1035189.HMPREF9954_0304	Phage minor capsid protein 2	NA
UHGV-0144565_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0144565_26	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0144565_26	COG	COG2369	NA	NA
UHGV-0144565_26	Structural annotation	PF06152	NA	NA
UHGV-0144565_27	PHROG	phrog_1865	NA	unknown function
UHGV-0144565_27	UniRef90	UniRef90_F5W1Y5	Conserved domain protein	NA
UHGV-0144565_27	eggNOG-mapper	1035189.HMPREF9954_0305	NA	NA
UHGV-0144565_27	Structural annotation	PF07073, MF_01077, NF037951, COG4568	NA	NA
UHGV-0144565_28	PHROG	phrog_903	NA	unknown function
UHGV-0144565_28	UniRef90	UniRef90_A0A0Z8IW18	NA	NA
UHGV-0144565_28	eggNOG-mapper	996306.SSUR61_0989	NA	NA
UHGV-0144565_29	PHROG	phrog_918	NA	unknown function
UHGV-0144565_29	UniRef90	UniRef90_UPI001E3E9930	NA	NA
UHGV-0144565_29	eggNOG-mapper	413066.A1EAE7_9CAUD	NA	NA
UHGV-0144565_29	Pfam	PF19791	NA	DUF6275
UHGV-0144565_29	Structural annotation	PF19791	NA	NA
UHGV-0144565_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0144565_30	UniRef90	UniRef90_A0A5Q2S4Y6	Scaffolding protein	NA
UHGV-0144565_30	eggNOG-mapper	646413.C5IUJ4_9CAUD	Phage minor structural protein GP20	NA
UHGV-0144565_30	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0144565_30	Structural annotation	PF06810	NA	NA
UHGV-0144565_31	PHROG	phrog_422	major head protein	head and packaging
UHGV-0144565_31	UniRef90	UniRef90_UPI0013DEB355	N4-gp56 family major capsid protein	NA
UHGV-0144565_31	eggNOG-mapper	764291.STRUR_2102	NA	NA
UHGV-0144565_31	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0144565_32	PHROG	phrog_10018	NA	unknown function
UHGV-0144565_33	PHROG	phrog_2910	NA	unknown function
UHGV-0144565_33	UniRef90	UniRef90_F9PZ37	Conserved domain protein	NA
UHGV-0144565_33	Structural annotation	PF20873	NA	NA
UHGV-0144565_34	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0144565_34	UniRef90	UniRef90_A0A0Z8KH98	NA	NA
UHGV-0144565_34	eggNOG-mapper	764291.STRUR_2099	NA	NA
UHGV-0144565_35	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0144565_35	UniRef90	UniRef90_A0A0Z8KHA3	NA	NA
UHGV-0144565_35	eggNOG-mapper	537874.B3GW07_9CAUD	Minor capsid protein	NA
UHGV-0144565_35	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0144565_35	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0144565_36	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0144565_36	UniRef90	UniRef90_A0A0E4H349	NA	NA
UHGV-0144565_36	eggNOG-mapper	646413.C5IUJ8_9CAUD	Minor capsid protein	NA
UHGV-0144565_36	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0144565_36	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0144565_37	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0144565_37	UniRef90	UniRef90_A0A139RN84	Phage minor capsid protein	NA
UHGV-0144565_37	eggNOG-mapper	646413.C5IUJ9_9CAUD	Minor capsid protein from bacteriophage	NA
UHGV-0144565_37	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0144565_37	Structural annotation	PF12691	NA	NA
UHGV-0144565_38	PHROG	phrog_820	major tail protein	tail
UHGV-0144565_38	UniRef90	UniRef90_A0A4V0EXF3	Major tail shaft protein	NA
UHGV-0144565_38	eggNOG-mapper	764291.STRUR_2095	NA	NA
UHGV-0144565_38	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0144565_39	PHROG	phrog_1061	NA	unknown function
UHGV-0144565_39	UniRef90	UniRef90_A0A139RN56	NA	NA
UHGV-0144565_39	eggNOG-mapper	1035189.HMPREF9954_0315	NA	NA
UHGV-0144565_39	Structural annotation	PF10666	NA	NA
UHGV-0144565_40	PHROG	phrog_706	NA	unknown function
UHGV-0144565_40	UniRef90	UniRef90_A0A0E4H2K9	Phage Gp15 protein	NA
UHGV-0144565_40	eggNOG-mapper	764291.STRUR_2093	Bacteriophage Gp15 protein	NA
UHGV-0144565_40	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0144565_40	Structural annotation	PF06854	NA	NA
UHGV-0144565_41	PHROG	phrog_1204	tail protein	tail
UHGV-0144565_41	UniRef90	UniRef90_A0A380JZ80	NA	NA
UHGV-0144565_41	eggNOG-mapper	764291.STRUR_2092	phage tail tape measure protein	NA
UHGV-0144565_41	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0144565_41	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0144565_41	COG	COG5412	Phage-related protein	NA
UHGV-0144565_41	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA