UHGV-0144575

Genome information

Genome length 19,053 bps

CDS count 26

Completeness 56.73% (medium-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0144575
vOTU ID	vOTU-021546
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_430821
BioSample	SAMN05545088
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.73% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.88
Jumbo phage	No

Genome content
Genome length	19,053 bps
GC content	52.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	93.40%
Average CDS length	687.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0144575_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0144575_1	PHROG	phrog_435	endolysin	lysis
UHGV-0144575_1	UniRef90	UniRef90_A0A3R6ZZA0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0144575_1	eggNOG-mapper	1203606.HMPREF1526_00962	Ami_3	NA
UHGV-0144575_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0144575_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0144575_1	Structural annotation	PF01520, PF18342, MF_00562, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0144575_4	eggNOG-mapper	1094508.Tsac_2415	NA	NA
UHGV-0144575_4	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0144575_5	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0144575_5	UniRef90	UniRef90_A0A2T3EZI8	PhageMin_Tail domain-containing protein	NA
UHGV-0144575_5	eggNOG-mapper	428125.CLOLEP_00174	tail tape measure protein, TP901	NA
UHGV-0144575_5	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0144575_5	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0144575_5	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0144575_6	PHROG	phrog_706	NA	unknown function
UHGV-0144575_6	UniRef90	UniRef90_UPI0011DD2DB5	Gp15 family bacteriophage protein	NA
UHGV-0144575_6	eggNOG-mapper	428125.CLOLEP_00176	Bacteriophage Gp15 protein	NA
UHGV-0144575_6	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0144575_6	Structural annotation	PF06854	NA	NA
UHGV-0144575_7	Structural annotation	PF10666	NA	NA
UHGV-0144575_8	PHROG	phrog_820	major tail protein	tail
UHGV-0144575_8	UniRef90	UniRef90_A0A3R6YSE8	Capsid protein	NA
UHGV-0144575_8	eggNOG-mapper	479437.Elen_2633	Bacterial Ig-like domain (group 2)	NA
UHGV-0144575_8	COG	COG5492	NA	NA
UHGV-0144575_8	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0144575_9	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0144575_9	Structural annotation	PF12691	NA	NA
UHGV-0144575_10	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0144575_10	UniRef90	UniRef90_UPI000A81D34C	minor capsid protein	NA
UHGV-0144575_10	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0144575_10	Structural annotation	PF11114	NA	NA
UHGV-0144575_11	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0144575_11	UniRef90	UniRef90_UPI001D051971	minor capsid protein	NA
UHGV-0144575_11	eggNOG-mapper	1231057.AMGD01000018_gene3616	Minor capsid protein	NA
UHGV-0144575_11	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0144575_11	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0144575_11	Structural annotation	PF10665, TIGR01563	NA	NA
UHGV-0144575_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0144575_12	UniRef90	UniRef90_F5L4I5	Protein gp8	NA
UHGV-0144575_12	eggNOG-mapper	986075.CathTA2_0698	NA	NA
UHGV-0144575_13	PHROG	phrog_267	major head protein	head and packaging
UHGV-0144575_13	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0144575_13	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0144575_13	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0144575_15	eggNOG-mapper	1121335.Clst_0388	NA	NA
UHGV-0144575_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0144575_16	UniRef90	UniRef90_UPI00191552C0	phage minor capsid protein	NA
UHGV-0144575_16	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0144575_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0144575_16	COG	COG2369	NA	NA
UHGV-0144575_16	Structural annotation	PF06152	NA	NA
UHGV-0144575_17	PHROG	phrog_533	portal protein	head and packaging
UHGV-0144575_17	UniRef90	UniRef90_UPI001D71E5F8	phage portal protein	NA
UHGV-0144575_17	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0144575_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0144575_17	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0144575_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0144575_18	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0144575_18	UniRef90	UniRef90_UPI00083395FE	PBSX family phage terminase large subunit	NA
UHGV-0144575_18	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-0144575_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0144575_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0144575_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0144575_18	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0144575_19	PHROG	phrog_2412	NA	unknown function
UHGV-0144575_19	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-0144575_19	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0144575_20	PHROG	phrog_10872	NA	unknown function
UHGV-0144575_20	eggNOG-mapper	86416.Clopa_3145	nucleoside 2-deoxyribosyltransferase	NA
UHGV-0144575_20	PADLOC	Effector_00071	TIR	CBASS
UHGV-0144575_20	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0144575_21	Structural annotation	TIGR01636	NA	NA
UHGV-0144575_25	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0144575_25	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0144575_25	UniRef90	UniRef90_A0A1C5T0C1	Holliday junction resolvase	NA
UHGV-0144575_25	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-0144575_25	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0144575_25	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0144575_25	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0144575_26	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0144575_26	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0144575_26	UniRef90	UniRef90_R6PFW5	IstB_IS21 domain-containing protein	NA
UHGV-0144575_26	eggNOG-mapper	1121472.AQWN01000006_gene1779	DNA replication protein	NA
UHGV-0144575_26	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0144575_26	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0144575_26	Structural annotation	PF01695, MF_01919, NF038214, COG1484	NA	NA