UHGV-0144585

Genome information

Genome length 31,823 bps

CDS count 47

Completeness 100.00% (complete)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0144585
vOTU ID	vOTU-055505
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_438283
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.67
Jumbo phage	No

Genome content
Genome length	31,823 bps
GC content	43.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	93.75%
Average CDS length	637.34 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0144585_1	PHROG	phrog_9958	NA	unknown function
UHGV-0144585_1	UniRef90	UniRef90_A0A356CXW0	NA	NA
UHGV-0144585_1	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-0144585_1	Pfam	PF19789	NA	DUF6273
UHGV-0144585_1	Structural annotation	PF19789	NA	NA
UHGV-0144585_3	PHROG	phrog_22040	NA	unknown function
UHGV-0144585_4	Pfam	PF00249	Myb-like DNA-binding domain	Myb_DNA-binding
UHGV-0144585_4	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0144585_5	AcrCatalog	cluster_228823	NA	NA
UHGV-0144585_7	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0144585_7	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0144585_7	UniRef90	UniRef90_UPI001D091C0C	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0144585_7	eggNOG-mapper	1291050.JAGE01000002_gene3264	sulfate reduction	NA
UHGV-0144585_7	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0144585_7	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0144585_7	Structural annotation	PF01507, MF_00064, NF010367, COG0175	NA	NA
UHGV-0144585_9	AcrCatalog	cluster_173058	NA	NA
UHGV-0144585_11	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0144585_11	UniRef90	UniRef90_W0U6Z9	Spo0A_C domain-containing protein	NA
UHGV-0144585_11	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0144585_11	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0144585_12	eggNOG-mapper	1160721.RBI_I01600	NA	NA
UHGV-0144585_12	AcrCatalog	cluster_136737	NA	NA
UHGV-0144585_13	UniRef90	UniRef90_A0A356CXX0	DNA-binding protein	NA
UHGV-0144585_13	eggNOG-mapper	1160721.RBI_I01602	NA	NA
UHGV-0144585_14	UniRef90	UniRef90_A0A1C5RDF3	HTH cro/C1-type domain-containing protein	NA
UHGV-0144585_14	eggNOG-mapper	1280696.ATVY01000014_gene2044	NA	NA
UHGV-0144585_15	PHROG	phrog_1914	NA	unknown function
UHGV-0144585_15	UniRef90	UniRef90_A0A356CYI1	Peptidase_M78 domain-containing protein	NA
UHGV-0144585_15	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0144585_15	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0144585_15	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0144585_15	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0144585_16	PHROG	phrog_37629	NA	unknown function
UHGV-0144585_16	UniRef90	UniRef90_W0U6D1	TM2 domain-containing protein	NA
UHGV-0144585_16	eggNOG-mapper	1160721.RBI_I01605	NA	NA
UHGV-0144585_16	AcrCatalog	cluster_27895	NA	NA
UHGV-0144585_16	Pfam	PF05154	TM2 domain	TM2
UHGV-0144585_16	Structural annotation	PF05154	NA	NA
UHGV-0144585_17	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0144585_17	PHROG	phrog_95	integrase	integration and excision
UHGV-0144585_17	UniRef90	UniRef90_W0U739	Putative phage integrase	NA
UHGV-0144585_17	eggNOG-mapper	1160721.RBI_I01606	NA	NA
UHGV-0144585_17	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0144585_17	Pfam	PF07508	Recombinase	Recombinase
UHGV-0144585_17	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0144585_17	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0144585_17	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0144585_18	KOfam	K07273	acm; lysozyme	NA
UHGV-0144585_18	PHROG	phrog_291	endolysin	lysis
UHGV-0144585_18	UniRef90	UniRef90_A0A356CYE1	LysM domain-containing protein	NA
UHGV-0144585_18	eggNOG-mapper	1160721.RBI_I01563	hydrolase, family 25	NA
UHGV-0144585_18	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0144585_18	Pfam	PF01476	LysM domain	LysM
UHGV-0144585_18	COG	COG1388	LysM repeat	NA
UHGV-0144585_18	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0144585_20	PHROG	phrog_199	holin	lysis
UHGV-0144585_20	UniRef90	UniRef90_W0U6A0	Holin	NA
UHGV-0144585_20	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0144585_20	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0144585_20	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0144585_20	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0144585_20	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0144585_21	PHROG	phrog_134	NA	unknown function
UHGV-0144585_21	UniRef90	UniRef90_A0A3E3I052	XkdX family protein	NA
UHGV-0144585_21	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0144585_21	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0144585_23	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0144585_23	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0144585_23	UniRef90	UniRef90_W0U5C0	Reverse transcriptase domain-containing protein	NA
UHGV-0144585_23	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0144585_23	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0144585_23	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0144585_23	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0144585_23	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0144585_24	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0144585_24	UniRef90	UniRef90_UPI00189E384C	four helix bundle protein	NA
UHGV-0144585_24	eggNOG-mapper	658655.HMPREF0988_00872	NA	NA
UHGV-0144585_24	Pfam	PF05635	23S rRNA-intervening sequence protein	23S_rRNA_IVP
UHGV-0144585_24	Structural annotation	PF05635, NF008911	NA	NA
UHGV-0144585_25	PHROG	phrog_19280	NA	unknown function
UHGV-0144585_25	UniRef90	UniRef90_W0U6W8	NA	NA
UHGV-0144585_25	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-0144585_25	Pfam	PF19789	NA	DUF6273
UHGV-0144585_25	Structural annotation	PF19789	NA	NA
UHGV-0144585_28	PHROG	phrog_19280	NA	unknown function
UHGV-0144585_28	UniRef90	UniRef90_W0U658	BppU_N domain-containing protein	NA
UHGV-0144585_28	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-0144585_28	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0144585_28	Structural annotation	PF10651, NF032891, COG2372	NA	NA
UHGV-0144585_29	Structural annotation	PF07761	NA	NA
UHGV-0144585_30	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0144585_30	UniRef90	UniRef90_A0A373WMD1	Peptidase S74 domain-containing protein	NA
UHGV-0144585_30	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0144585_30	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0144585_30	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0144585_30	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0144585_30	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0144585_30	COG	COG4926	Phage-related protein	NA
UHGV-0144585_30	Structural annotation	PF14594, PF13884, TIGR01665, COG4926	NA	NA
UHGV-0144585_31	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0144585_31	UniRef90	UniRef90_UPI00164BA811	phage tail family protein	NA
UHGV-0144585_31	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0144585_31	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0144585_31	COG	COG4722	Phage-related protein YomH	NA
UHGV-0144585_31	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0144585_32	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0144585_32	UniRef90	UniRef90_R6GII4	Immunity-specific protein Beta241	NA
UHGV-0144585_32	eggNOG-mapper	1160721.RBI_I01576	tail tape measure protein, TP901	NA
UHGV-0144585_32	COG	COG5283	Phage-related tail protein	NA
UHGV-0144585_34	PHROG	phrog_885	major tail protein	tail
UHGV-0144585_34	UniRef90	UniRef90_A0A7C6X6S5	Ig-like domain-containing protein	NA
UHGV-0144585_34	eggNOG-mapper	1160721.RBI_I01578	NA	NA
UHGV-0144585_34	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0144585_36	Structural annotation	TIGR01725	NA	NA
UHGV-0144585_37	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0144585_37	UniRef90	UniRef90_R6HH08	Putative phage head-tail adaptor	NA
UHGV-0144585_37	eggNOG-mapper	1160721.RBI_I01580	head-tail adaptor	NA
UHGV-0144585_37	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0144585_37	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0144585_37	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0144585_38	PHROG	phrog_5223	neck protein	connector
UHGV-0144585_38	UniRef90	UniRef90_A0A356CXV0	DNA-packaging protein	NA
UHGV-0144585_38	eggNOG-mapper	1160721.RBI_I01581	NA	NA
UHGV-0144585_38	Structural annotation	TIGR01560	NA	NA
UHGV-0144585_39	PHROG	phrog_10	major head protein	head and packaging
UHGV-0144585_39	UniRef90	UniRef90_A0A356CXS9	Phage major capsid protein	NA
UHGV-0144585_39	eggNOG-mapper	1160721.RBI_I01582	Phage capsid family	NA
UHGV-0144585_39	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0144585_39	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0144585_39	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0144585_39	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0144585_40	KOfam	K06904	NA	NA
UHGV-0144585_40	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0144585_40	UniRef90	UniRef90_W0U5D2	Phage prohead protease, HK97 family	NA
UHGV-0144585_40	eggNOG-mapper	1160721.RBI_I01583	Caudovirus prohead serine protease	NA
UHGV-0144585_40	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0144585_40	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0144585_40	COG	COG3740	Phage head maturation protease	NA
UHGV-0144585_40	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0144585_41	PHROG	phrog_12	portal protein	head and packaging
UHGV-0144585_41	UniRef90	UniRef90_W0U6Y2	Phage portal protein	NA
UHGV-0144585_41	eggNOG-mapper	1160721.RBI_I01584	Phage portal protein	NA
UHGV-0144585_41	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0144585_41	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0144585_41	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0144585_42	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0144585_42	UniRef90	UniRef90_W0U6B7	Putative terminase large subunit	NA
UHGV-0144585_42	eggNOG-mapper	1160721.RBI_I01585	large subunit	NA
UHGV-0144585_42	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0144585_42	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0144585_42	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0144585_42	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0144585_43	PHROG	phrog_1066	NA	unknown function
UHGV-0144585_43	UniRef90	UniRef90_W0U724	Phage terminase-like protein, small subunit	NA
UHGV-0144585_43	eggNOG-mapper	1160721.RBI_I01586	NA	NA
UHGV-0144585_43	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0144585_45	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0144585_45	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0144585_45	UniRef90	UniRef90_A0A356CYG8	HNH endonuclease	NA
UHGV-0144585_45	eggNOG-mapper	931626.Awo_c31080	HNH nucleases	NA
UHGV-0144585_45	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0144585_45	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0144585_46	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0144585_46	UniRef90	UniRef90_UPI00164ADA1B	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0144585_46	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0144585_47	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0144585_47	eggNOG-mapper	1160721.RBI_I01590	NA	NA