UHGV-0144618

Genome information

Genome length 36,357 bps

CDS count 43

Completeness 87.92% (medium-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0144618
vOTU ID	vOTU-036005
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_408761
BioSample	SAMN05414909
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.92% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.8
Jumbo phage	No

Genome content
Genome length	36,357 bps
GC content	60.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	93.89%
Average CDS length	796.61 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0144618_1	UniRef90	UniRef90_R5AZL5	Flavodoxin	NA
UHGV-0144618_1	eggNOG-mapper	1034345.CAEM01000014_gene250	Flavodoxin	NA
UHGV-0144618_1	Pfam	PF12682	Flavodoxin	Flavodoxin_4
UHGV-0144618_1	COG	COG0716	Flavodoxin	NA
UHGV-0144618_1	Structural annotation	PF12682, MF_00853, NF005501, COG0716	NA	NA
UHGV-0144618_3	eggNOG-mapper	1519439.JPJG01000078_gene913	NA	NA
UHGV-0144618_6	PHROG	phrog_1129	holin	lysis
UHGV-0144618_6	UniRef90	UniRef90_A0A8J6J3M3	Phage holin family protein	NA
UHGV-0144618_6	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-0144618_6	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0144618_6	Structural annotation	PF06946	NA	NA
UHGV-0144618_7	PHROG	phrog_4105	NA	unknown function
UHGV-0144618_7	eggNOG-mapper	592026.GCWU0000282_003290	NA	NA
UHGV-0144618_8	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0144618_8	PHROG	phrog_5182	endolysin	lysis
UHGV-0144618_8	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-0144618_8	eggNOG-mapper	397288.C806_00777	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0144618_8	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0144618_8	Pfam	PF00395	S-layer homology domain	SLH
UHGV-0144618_8	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0144618_8	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0144618_9	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0144618_9	UniRef90	UniRef90_UPI001E585BFA	NA	NA
UHGV-0144618_9	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0144618_9	Pfam	PF14359	NA	DUF4406
UHGV-0144618_9	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0144618_10	eggNOG-mapper	97139.C824_02546	Flagellar rod assembly protein muramidase FlgJ	NA
UHGV-0144618_10	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0144618_11	PHROG	phrog_22978	NA	unknown function
UHGV-0144618_11	UniRef90	UniRef90_A0A1Y4WLF7	PBECR5 domain-containing protein	NA
UHGV-0144618_11	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0144618_11	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-0144618_12	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0144618_13	PHROG	phrog_24267	NA	unknown function
UHGV-0144618_13	eggNOG-mapper	742742.HMPREF9452_00376	tail collar domain protein	NA
UHGV-0144618_13	COG	COG4675	Phage tail collar domain	NA
UHGV-0144618_13	Structural annotation	COG4675	NA	NA
UHGV-0144618_14	PHROG	phrog_38190	NA	unknown function
UHGV-0144618_14	eggNOG-mapper	762211.BSTEL_0610	NA	NA
UHGV-0144618_16	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0144618_16	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0144618_16	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0144618_17	PHROG	phrog_12105	NA	unknown function
UHGV-0144618_17	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0144618_18	PHROG	phrog_15239	NA	unknown function
UHGV-0144618_19	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0144618_19	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0144618_19	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0144618_19	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0144618_19	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0144618_20	PHROG	phrog_13908	NA	unknown function
UHGV-0144618_20	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0144618_21	KOfam	K07584	NA	NA
UHGV-0144618_21	PHROG	phrog_4478	peptidase	other
UHGV-0144618_21	UniRef90	UniRef90_UPI001A8F44BB	ribosomal-processing cysteine protease Prp	NA
UHGV-0144618_21	eggNOG-mapper	521098.Aaci_1816	Cysteine protease Prp	NA
UHGV-0144618_21	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0144618_21	COG	COG2868	NA	NA
UHGV-0144618_21	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-0144618_22	PHROG	phrog_156	portal protein	head and packaging
UHGV-0144618_22	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0144618_22	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0144618_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0144618_23	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0144618_23	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-0144618_23	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0144618_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0144618_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0144618_23	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0144618_24	PHROG	phrog_1206	terminase small subunit	head and packaging
UHGV-0144618_26	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0144618_26	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0144618_26	UniRef90	UniRef90_A0A174WGH7	Holliday junction resolvase	NA
UHGV-0144618_26	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0144618_26	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0144618_26	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0144618_27	PHROG	phrog_474	phosphofructokinase	other
UHGV-0144618_27	UniRef90	UniRef90_A0A7V6W4J9	NA	NA
UHGV-0144618_27	eggNOG-mapper	665956.HMPREF1032_00639	NA	NA
UHGV-0144618_27	Pfam	PF19905	NA	DUF6378
UHGV-0144618_27	Structural annotation	PF19905	NA	NA
UHGV-0144618_31	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0144618_31	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0144618_31	eggNOG-mapper	293826.Amet_2596	NA	NA
UHGV-0144618_31	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0144618_32	Structural annotation	PF06657	NA	NA
UHGV-0144618_33	PHROG	phrog_3136	NA	unknown function
UHGV-0144618_33	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0144618_33	eggNOG-mapper	1235793.C809_02645	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0144618_33	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0144618_33	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0144618_34	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0144618_37	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0144618_37	UniRef90	UniRef90_A0A1I7FTR4	DnaD and phage-associated domain-containing protein	NA
UHGV-0144618_37	eggNOG-mapper	644966.Tmar_0029	HNH endonuclease	NA
UHGV-0144618_37	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0144618_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0144618_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0144618_38	UniRef90	UniRef90_A0A1W1YRF9	Single-stranded DNA-binding protein	NA
UHGV-0144618_38	eggNOG-mapper	1226322.HMPREF1545_04080	Single-strand binding protein family	NA
UHGV-0144618_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0144618_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0144618_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0144618_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0144618_38	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0144618_39	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0144618_39	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0144618_39	UniRef90	UniRef90_U2SBP2	Recombination and repair protein RecT	NA
UHGV-0144618_39	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0144618_39	Pfam	PF03837	RecT family	RecT
UHGV-0144618_39	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0144618_39	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0144618_39	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0144618_40	Structural annotation	PF12844, MF_00535, NF041951, COG5499	NA	NA
UHGV-0144618_41	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0144618_41	UniRef90	UniRef90_A0A1Y4L975	YqaJ domain-containing protein	NA
UHGV-0144618_41	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0144618_41	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0144618_41	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0144618_41	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0144618_41	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA