UHGV-0144658

Genome information

vOTU vOTU-031973

Genome length 21,358 bps

CDS count 36

Completeness 52.69% (medium-quality)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-0144658
vOTU ID	vOTU-031973
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_396782
BioSample	SAMN04161033
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.69% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.91
Jumbo phage	No

Genome content
Genome length	21,358 bps
GC content	51.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	90.23%
Average CDS length	538.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0144658_1	KOfam	K21039	int; enterobacteria phage integrase [EC:2.7.7.- 3.1.-.-]	NA
UHGV-0144658_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0144658_1	UniRef90	UniRef90_K7PLZ2	Integrase	NA
UHGV-0144658_1	eggNOG-mapper	1147158.K7PLZ2_9CAUD	Phage integrase family	NA
UHGV-0144658_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0144658_1	Structural annotation	PF00589, PF13102, MF_01807, TIGR02224, COG4974	NA	NA
UHGV-0144658_2	PHROG	phrog_1266	excisionase	integration and excision
UHGV-0144658_2	UniRef90	UniRef90_A0A345C8P6	NA	NA
UHGV-0144658_2	eggNOG-mapper	1147158.K7PHA0_9CAUD	NA	NA
UHGV-0144658_2	Pfam	PF13986	NA	DUF4224
UHGV-0144658_2	Structural annotation	PF13986	NA	NA
UHGV-0144658_3	PHROG	phrog_3451	NA	unknown function
UHGV-0144658_3	UniRef90	UniRef90_UPI001E413052	NA	NA
UHGV-0144658_3	eggNOG-mapper	1147143.K7P7E4_9CAUD	NA	NA
UHGV-0144658_4	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0144658_4	UniRef90	UniRef90_A0A8B5ZS91	DNA cytosine methyltransferase	NA
UHGV-0144658_4	eggNOG-mapper	255431.Q6UAU0_9CAUD	methyltransferase activity	NA
UHGV-0144658_4	Structural annotation	PF03686, NF008872, COG1255	NA	NA
UHGV-0144658_5	PHROG	phrog_1667	NA	unknown function
UHGV-0144658_5	UniRef90	UniRef90_UPI000793AE77	ead/Ea22-like family protein	NA
UHGV-0144658_5	eggNOG-mapper	1147158.K7PLZ3_9CAUD	Ead/Ea22-like protein	NA
UHGV-0144658_5	Pfam	PF13935	Ead/Ea22-like protein	Ead_Ea22
UHGV-0144658_5	Structural annotation	PF13935	NA	NA
UHGV-0144658_6	PHROG	phrog_492	NA	unknown function
UHGV-0144658_6	UniRef90	UniRef90_A0A7Z8BS64	Ead/Ea22-like family protein	NA
UHGV-0144658_6	eggNOG-mapper	1498172.A0A0F6N6A6_9CAUD	NA	NA
UHGV-0144658_7	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0144658_7	PHROG	phrog_1033	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0144658_7	UniRef90	UniRef90_A0A8B3UZY8	Phage-related DNA-binding protein	NA
UHGV-0144658_7	eggNOG-mapper	1399774.JDWH01000016_gene3454	DNA binding	NA
UHGV-0144658_7	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0144658_7	Structural annotation	PF02195, PF08535, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0144658_8	PHROG	phrog_14171	NA	unknown function
UHGV-0144658_8	eggNOG-mapper	1399774.JDWH01000016_gene3453	NA	NA
UHGV-0144658_9	PHROG	phrog_13002	NA	unknown function
UHGV-0144658_9	eggNOG-mapper	701347.Entcl_1834	NA	NA
UHGV-0144658_11	PHROG	phrog_20296	NA	unknown function
UHGV-0144658_11	UniRef90	UniRef90_A0A4Q4A1P4	ClpX-type ZB domain-containing protein	NA
UHGV-0144658_11	Pfam	PF06689	ClpX C4-type zinc finger	zf-C4_ClpX
UHGV-0144658_12	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0144658_12	UniRef90	UniRef90_UPI000DCEF36F	helix-turn-helix domain-containing protein	NA
UHGV-0144658_12	eggNOG-mapper	371042.NG99_23620	Helix-turn-helix	NA
UHGV-0144658_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0144658_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0144658_13	PHROG	phrog_35	transcriptional repressor	transcription regulation
UHGV-0144658_13	UniRef90	UniRef90_UPI00079AC815	YdaS family helix-turn-helix protein	NA
UHGV-0144658_13	eggNOG-mapper	371042.NG99_23625	Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA
UHGV-0144658_13	Pfam	PF15943	Bacterial toxin YdaS	YdaS_toxin
UHGV-0144658_13	Structural annotation	PF15943, NF041951, COG4197	NA	NA
UHGV-0144658_14	PHROG	phrog_101	CII-like transcriptional activator	transcription regulation
UHGV-0144658_14	eggNOG-mapper	1399774.JDWH01000016_gene3452	NA	NA
UHGV-0144658_14	Pfam	PF06892	Phage regulatory protein CII (CP76)	Phage_CP76
UHGV-0144658_14	NCBIFam	NF041471.1	YmfL family putative regulatory protein	NA
UHGV-0144658_14	Structural annotation	PF06892, NF041471	NA	NA
UHGV-0144658_15	PHROG	phrog_1170	NA	unknown function
UHGV-0144658_16	PHROG	phrog_22793	NA	unknown function
UHGV-0144658_16	UniRef90	UniRef90_K7PLZ7	Phg_2220_C domain-containing protein	NA
UHGV-0144658_16	eggNOG-mapper	1147158.K7PLZ7_9CAUD	calcium ion binding	NA
UHGV-0144658_16	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0144658_16	Structural annotation	PF13463, MF_01909, TIGR02220, NF040939, COG1675	NA	NA
UHGV-0144658_17	PHROG	phrog_1324	transcriptional activator	transcription regulation
UHGV-0144658_17	UniRef90	UniRef90_UPI001010CDE4	PerC family transcriptional regulator	NA
UHGV-0144658_17	eggNOG-mapper	1399774.JDWH01000016_gene3450	PerC transcriptional activator	NA
UHGV-0144658_17	Structural annotation	PF07106, PF06069, MF_01909, NF012168, NF033650, COG5625	NA	NA
UHGV-0144658_18	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0144658_18	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0144658_18	UniRef90	UniRef90_A0A2J0QV16	DNA methyltransferase	NA
UHGV-0144658_18	eggNOG-mapper	1399774.JDWH01000016_gene3449	Belongs to the MT-A70-like family	NA
UHGV-0144658_18	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0144658_18	Pfam	PF05063	MT-A70	MT-A70
UHGV-0144658_18	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0144658_18	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0144658_19	PHROG	phrog_303	NA	unknown function
UHGV-0144658_19	UniRef90	UniRef90_A0A377CD16	Ybl17	NA
UHGV-0144658_19	eggNOG-mapper	1399774.JDWH01000016_gene3448	NA	NA
UHGV-0144658_20	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0144658_20	PHROG	phrog_362	transcriptional repressor	transcription regulation
UHGV-0144658_20	UniRef90	UniRef90_A0A431SB56	LexA family transcriptional regulator	NA
UHGV-0144658_20	eggNOG-mapper	1147158.K7PHB4_9CAUD	LexA DNA binding domain	NA
UHGV-0144658_20	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0144658_20	Structural annotation	PF01726, MF_00732, TIGR02944, COG1321	NA	NA
UHGV-0144658_21	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0144658_21	PHROG	phrog_1324	transcriptional activator	transcription regulation
UHGV-0144658_21	UniRef90	UniRef90_A0A8B3V1E2	Crossover junction endodeoxyribonuclease rusA	NA
UHGV-0144658_21	eggNOG-mapper	1399774.JDWH01000016_gene3446	Endodeoxyribonuclease RusA	NA
UHGV-0144658_21	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0144658_21	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0144658_21	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0144658_22	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0144658_22	UniRef90	UniRef90_A0A0J1LFM5	ANT domain-containing protein	NA
UHGV-0144658_22	eggNOG-mapper	1399774.JDWH01000016_gene3445	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0144658_22	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0144658_22	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0144658_22	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0144658_22	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0144658_23	PHROG	phrog_96	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0144658_23	UniRef90	UniRef90_A0A7G3EXZ6	HNHc domain-containing protein	NA
UHGV-0144658_23	eggNOG-mapper	1147158.K7PJS6_9CAUD	NA	NA
UHGV-0144658_23	Pfam	PF06147	NA	DUF968
UHGV-0144658_23	Structural annotation	PF06147	NA	NA
UHGV-0144658_24	PHROG	phrog_753	anti-termination protein Q-like	transcription regulation
UHGV-0144658_24	UniRef90	UniRef90_A0A1L4PH93	Antitermination protein	NA
UHGV-0144658_24	eggNOG-mapper	1399774.JDWH01000016_gene3443	NA	NA
UHGV-0144658_24	Pfam	PF06576	NA	DUF1133
UHGV-0144658_24	Structural annotation	PF06576	NA	NA
UHGV-0144658_25	PHROG	phrog_198	holin	lysis
UHGV-0144658_25	UniRef90	UniRef90_A0A0F6TUZ0	Membrane protein	NA
UHGV-0144658_25	eggNOG-mapper	1399774.JDWH01000016_gene3442	Putative phage holin	NA
UHGV-0144658_25	Pfam	PF16931	Putative phage holin	Phage_holin_8
UHGV-0144658_25	Structural annotation	PF16931	NA	NA
UHGV-0144658_26	PHROG	phrog_217	holin	lysis
UHGV-0144658_26	UniRef90	UniRef90_K7PKN9	Putative holin	NA
UHGV-0144658_26	eggNOG-mapper	1147158.K7PKN9_9CAUD	Pfam:Phage_holin_3_7	NA
UHGV-0144658_26	Pfam	PF05449	Putative 3TM holin, Phage_holin_3	Phage_holin_3_7
UHGV-0144658_27	KOfam	K03791	K03791; putative chitinase	NA
UHGV-0144658_27	PHROG	phrog_181	endolysin	lysis
UHGV-0144658_27	UniRef90	UniRef90_A0A2J0Q0C3	Endolysin	NA
UHGV-0144658_27	eggNOG-mapper	1399774.JDWH01000016_gene3440	Chitinase class I	NA
UHGV-0144658_27	Pfam	PF00182	Chitinase class I	Glyco_hydro_19
UHGV-0144658_27	COG	COG3179	Chitinase, GH19 family	NA
UHGV-0144658_27	Structural annotation	PF00182, TIGR02282, COG3179	NA	NA
UHGV-0144658_28	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-0144658_28	UniRef90	UniRef90_UPI001C5AC0A9	NA	NA
UHGV-0144658_28	eggNOG-mapper	906669.G8C7W1_9CAUD	NA	NA
UHGV-0144658_29	PHROG	phrog_3593	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0144658_29	UniRef90	UniRef90_A0A6S5JZB0	HNHc domain-containing protein	NA
UHGV-0144658_29	eggNOG-mapper	1340825.S5YM54_9CAUD	HNH endonuclease	NA
UHGV-0144658_29	PADLOC	HEase_00033	homing endonuclease	RM
UHGV-0144658_29	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0144658_30	PHROG	phrog_1579	glycosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0144658_30	UniRef90	UniRef90_A0A0V9JR54	Glycosyltransferase	NA
UHGV-0144658_30	eggNOG-mapper	716541.ECL_01682	Glycosyl transferase, family 2	NA
UHGV-0144658_30	COG	COG1216	Glycosyltransferase, GT2 family	NA
UHGV-0144658_30	Structural annotation	PF03414, PF13641, MF_01520, TIGR03965, NF041524, COG1216, COG1442	NA	NA
UHGV-0144658_31	PHROG	phrog_2735	NA	unknown function
UHGV-0144658_31	UniRef90	UniRef90_A0A8B6A0E6	NA	NA
UHGV-0144658_31	Pfam	PF07041	NA	DUF1327
UHGV-0144658_32	PHROG	phrog_10490	NA	unknown function
UHGV-0144658_32	eggNOG-mapper	101570.Q5G8W4_9CAUD	NA	NA
UHGV-0144658_33	PHROG	phrog_854	glucosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0144658_33	eggNOG-mapper	1399774.JDWH01000016_gene3435	Glycosyl transferase, family 2	NA
UHGV-0144658_33	COG	COG0463	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-0144658_33	Structural annotation	PF03071, TIGR03937, COG3306	NA	NA
UHGV-0144658_34	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0144658_34	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0144658_34	UniRef90	UniRef90_A0A6X9BD36	HNH endonuclease	NA
UHGV-0144658_34	eggNOG-mapper	1147150.K7PHK9_9CAUD	HNH endonuclease	NA
UHGV-0144658_34	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0144658_34	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0144658_35	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0144658_35	UniRef90	UniRef90_K7PHI2	Terminase small subunit	NA
UHGV-0144658_35	eggNOG-mapper	1147150.K7PHI2_9CAUD	Phage terminase, small subunit	NA
UHGV-0144658_35	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0144658_35	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0144658_35	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0144658_36	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0144658_36	UniRef90	UniRef90_A0A2P5GP33	Terminase	NA
UHGV-0144658_36	eggNOG-mapper	1147150.K7PKT2_9CAUD	Phage Terminase	NA
UHGV-0144658_36	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0144658_36	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0144658_36	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA