UHGV-0144746

Genome information

Genome length 37,210 bps

CDS count 57

Completeness 99.90% (high-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0144746
vOTU ID	vOTU-066293
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_400697
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.82
Jumbo phage	No

Genome content
Genome length	37,210 bps
GC content	43.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	92.73%
Average CDS length	609.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0144746_1	KOfam	K06407	spoVAE; stage V sporulation protein AE	NA
UHGV-0144746_1	UniRef90	UniRef90_A0A412EXR3	SpoVA protein	NA
UHGV-0144746_1	eggNOG-mapper	411461.DORFOR_01378	SpoVAC/SpoVAEB sporulation membrane protein	NA
UHGV-0144746_1	Pfam	PF03862	SpoVAC/SpoVAEB sporulation membrane protein	SpoVAC_SpoVAEB
UHGV-0144746_1	NCBIFam	TIGR02839.1	stage V sporulation protein AE	NA
UHGV-0144746_2	KOfam	K14059	int; integrase	NA
UHGV-0144746_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0144746_2	UniRef90	UniRef90_R6SPW0	Tyr recombinase domain-containing protein	NA
UHGV-0144746_2	eggNOG-mapper	1235798.C817_04751	Belongs to the 'phage' integrase family	NA
UHGV-0144746_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0144746_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0144746_2	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0144746_3	UniRef90	UniRef90_R6SEH3	TPR Domain containing protein	NA
UHGV-0144746_3	eggNOG-mapper	1120746.CCNL01000013_gene1996	NA	NA
UHGV-0144746_3	Pfam	PF14559	Tetratricopeptide repeat	TPR_19
UHGV-0144746_3	Structural annotation	PF18768, MF_00994, NF008756, COG5010	NA	NA
UHGV-0144746_4	PHROG	phrog_87	metallo-protease	other
UHGV-0144746_4	UniRef90	UniRef90_A0A1C5SMT9	Metallopeptidase immA	NA
UHGV-0144746_4	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0144746_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0144746_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0144746_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0144746_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0144746_5	UniRef90	UniRef90_A0A844DZ87	Helix-turn-helix domain-containing protein	NA
UHGV-0144746_5	eggNOG-mapper	1235802.C823_04750	Helix-turn-helix XRE-family like proteins	NA
UHGV-0144746_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0144746_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0144746_5	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0144746_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0144746_6	UniRef90	UniRef90_A0A412EXN2	XRE family transcriptional regulator	NA
UHGV-0144746_6	eggNOG-mapper	1201292.DR75_1541	Helix-turn-helix XRE-family like proteins	NA
UHGV-0144746_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0144746_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0144746_6	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0144746_10	Structural annotation	PF10743, NF040990	NA	NA
UHGV-0144746_12	PHROG	phrog_32342	NA	unknown function
UHGV-0144746_15	PHROG	phrog_26484	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0144746_15	UniRef90	UniRef90_A0A396KWB6	PC4 domain-containing protein	NA
UHGV-0144746_15	eggNOG-mapper	1158612.I580_02374	Transcriptional Coactivator p15 (PC4)	NA
UHGV-0144746_15	Pfam	PF02229	Transcriptional Coactivator p15 (PC4)	PC4
UHGV-0144746_15	COG	COG4443	NA	NA
UHGV-0144746_15	Structural annotation	COG4443	NA	NA
UHGV-0144746_16	PHROG	phrog_18562	NA	unknown function
UHGV-0144746_16	eggNOG-mapper	1235799.C818_04196	NA	NA
UHGV-0144746_17	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-0144746_17	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0144746_17	UniRef90	UniRef90_A0A396L944	NA	NA
UHGV-0144746_17	eggNOG-mapper	1235799.C818_04197	NA	NA
UHGV-0144746_17	Pfam	PF10926	NA	DUF2800
UHGV-0144746_17	COG	COG2887	RecB family exonuclease	NA
UHGV-0144746_17	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0144746_18	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0144746_18	UniRef90	UniRef90_A0A396KWH9	NA	NA
UHGV-0144746_18	eggNOG-mapper	1235799.C818_04198	NA	NA
UHGV-0144746_18	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0144746_18	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0144746_19	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0144746_19	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0144746_19	UniRef90	UniRef90_A0A396KYP4	POLAc domain-containing protein	NA
UHGV-0144746_19	eggNOG-mapper	1235799.C818_04199	DNA polymerase A domain	NA
UHGV-0144746_19	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0144746_19	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0144746_19	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0144746_20	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0144746_20	UniRef90	UniRef90_A0A396L1U3	Virulence-associated protein E	NA
UHGV-0144746_20	eggNOG-mapper	1235799.C818_04200	Virulence-associated protein E	NA
UHGV-0144746_20	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0144746_20	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0144746_20	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-0144746_21	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0144746_21	UniRef90	UniRef90_A0A396L122	VRR-NUC domain-containing protein	NA
UHGV-0144746_21	eggNOG-mapper	1000569.HMPREF1040_0204	VRR_NUC	NA
UHGV-0144746_21	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0144746_21	Structural annotation	PF01974, MF_01490, NF011269	NA	NA
UHGV-0144746_22	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0144746_22	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0144746_22	UniRef90	UniRef90_A0A396L8U5	ATP-dependent helicase	NA
UHGV-0144746_22	eggNOG-mapper	1235799.C818_04202	SNF2 family N-terminal domain	NA
UHGV-0144746_22	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0144746_22	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0144746_22	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0144746_22	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0144746_22	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0144746_23	Structural annotation	MF_00773	NA	NA
UHGV-0144746_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0144746_25	UniRef90	UniRef90_A0A3R5X3C8	NA	NA
UHGV-0144746_25	eggNOG-mapper	411461.DORFOR_00754	sigma factor activity	NA
UHGV-0144746_25	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0144746_25	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0144746_25	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0144746_26	PHROG	phrog_2412	NA	unknown function
UHGV-0144746_26	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-0144746_26	eggNOG-mapper	742765.HMPREF9457_02118	NA	NA
UHGV-0144746_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0144746_27	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0144746_27	UniRef90	UniRef90_A0A395YD55	PBSX family phage terminase large subunit	NA
UHGV-0144746_27	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-0144746_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0144746_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0144746_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0144746_27	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0144746_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0144746_28	UniRef90	UniRef90_A0A374BVV6	Phage portal protein	NA
UHGV-0144746_28	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0144746_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0144746_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0144746_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0144746_29	UniRef90	UniRef90_UPI000C7906A1	phage minor capsid protein	NA
UHGV-0144746_29	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0144746_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0144746_29	COG	COG2369	NA	NA
UHGV-0144746_29	Structural annotation	PF06152	NA	NA
UHGV-0144746_30	eggNOG-mapper	411460.RUMTOR_01296	NA	NA
UHGV-0144746_31	KOfam	K07584	NA	NA
UHGV-0144746_31	PHROG	phrog_4478	peptidase	other
UHGV-0144746_31	UniRef90	UniRef90_A0A3E4ME95	Ribosomal-processing cysteine protease Prp	NA
UHGV-0144746_31	eggNOG-mapper	476272.RUMHYD_02852	Cysteine protease Prp	NA
UHGV-0144746_31	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0144746_31	COG	COG2868	NA	NA
UHGV-0144746_31	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0144746_32	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0144746_33	PHROG	phrog_267	major head protein	head and packaging
UHGV-0144746_33	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0144746_33	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0144746_33	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0144746_33	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0144746_34	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0144746_34	UniRef90	UniRef90_R5RS10	Protein gp8	NA
UHGV-0144746_34	eggNOG-mapper	665959.HMPREF1013_00198	NA	NA
UHGV-0144746_35	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0144746_35	UniRef90	UniRef90_UPI0003FC0B4B	putative minor capsid protein	NA
UHGV-0144746_35	eggNOG-mapper	1231057.AMGD01000018_gene3616	Minor capsid protein	NA
UHGV-0144746_35	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0144746_35	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0144746_35	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0144746_36	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0144746_36	UniRef90	UniRef90_UPI00082D57A1	minor capsid protein	NA
UHGV-0144746_36	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0144746_36	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0144746_37	UniRef90	UniRef90_UPI001D058B7D	minor capsid protein	NA
UHGV-0144746_37	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0144746_37	Structural annotation	PF12691	NA	NA
UHGV-0144746_38	PHROG	phrog_820	major tail protein	tail
UHGV-0144746_38	UniRef90	UniRef90_A0A3R6YSE8	Capsid protein	NA
UHGV-0144746_38	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0144746_38	COG	COG5492	NA	NA
UHGV-0144746_38	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0144746_39	Structural annotation	PF10666	NA	NA
UHGV-0144746_40	PHROG	phrog_706	NA	unknown function
UHGV-0144746_40	UniRef90	UniRef90_UPI0008360889	Gp15 family bacteriophage protein	NA
UHGV-0144746_40	eggNOG-mapper	1234679.BN424_2615	Bacteriophage Gp15 protein	NA
UHGV-0144746_40	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0144746_40	Structural annotation	PF06854	NA	NA
UHGV-0144746_41	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0144746_41	UniRef90	UniRef90_A0A374BV79	PhageMin_Tail domain-containing protein	NA
UHGV-0144746_41	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-0144746_41	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0144746_41	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0144746_41	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0144746_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0144746_42	eggNOG-mapper	411461.DORFOR_01176	NA	NA
UHGV-0144746_42	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0144746_43	PHROG	phrog_538	minor tail protein	tail
UHGV-0144746_43	UniRef90	UniRef90_UPI001D071BA3	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0144746_43	eggNOG-mapper	658655.HMPREF0988_02550	NA	NA
UHGV-0144746_43	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0144746_43	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0144746_44	PHROG	phrog_9994	NA	unknown function
UHGV-0144746_44	UniRef90	UniRef90_A0A845KHH7	H_lectin domain-containing protein	NA
UHGV-0144746_44	eggNOG-mapper	1256908.HMPREF0373_00465	NA	NA
UHGV-0144746_44	Structural annotation	PF20747	NA	NA
UHGV-0144746_46	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0144746_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0144746_46	UniRef90	UniRef90_A0A1C5SV17	Tyrosine recombinase XerD	NA
UHGV-0144746_46	eggNOG-mapper	742765.HMPREF9457_03372	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0144746_46	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0144746_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0144746_46	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0144746_46	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0144746_48	eggNOG-mapper	411461.DORFOR_00732	NA	NA
UHGV-0144746_49	PHROG	phrog_12931	NA	unknown function
UHGV-0144746_49	eggNOG-mapper	411461.DORFOR_00728	NA	NA
UHGV-0144746_50	PHROG	phrog_1382	NA	unknown function
UHGV-0144746_50	eggNOG-mapper	411461.DORFOR_00727	NA	NA
UHGV-0144746_51	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0144746_51	PHROG	phrog_11157	NA	unknown function
UHGV-0144746_51	UniRef90	UniRef90_B0G3A5	Big_13 domain-containing protein	NA
UHGV-0144746_51	eggNOG-mapper	742765.HMPREF9457_03368	NA	NA
UHGV-0144746_51	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0144746_51	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0144746_51	NCBIFam	NF033510.3	Ca2+-stabilized repeat-containing adhesin	NA
UHGV-0144746_51	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0144746_51	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0144746_52	PHROG	phrog_32322	NA	unknown function
UHGV-0144746_52	UniRef90	UniRef90_B0G3A4	Ig-like_bact domain-containing protein	NA
UHGV-0144746_52	eggNOG-mapper	411461.DORFOR_00725	NA	NA
UHGV-0144746_52	Pfam	PF13754	NA	Big_3_4
UHGV-0144746_52	Structural annotation	PF13754	NA	NA
UHGV-0144746_53	eggNOG-mapper	742765.HMPREF9457_03366	NA	NA
UHGV-0144746_53	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-0144746_54	eggNOG-mapper	411461.DORFOR_00723	NA	NA
UHGV-0144746_55	PHROG	phrog_1009	NA	unknown function
UHGV-0144746_55	UniRef90	UniRef90_A0A173RD60	Branched-chain amino acid ABC transporter permease	NA
UHGV-0144746_55	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-0144746_56	PHROG	phrog_1129	holin	lysis
UHGV-0144746_56	UniRef90	UniRef90_UPI00156E9657	phage holin family protein	NA
UHGV-0144746_56	eggNOG-mapper	553973.CLOHYLEM_07148	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0144746_56	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0144746_56	Structural annotation	PF16079	NA	NA
UHGV-0144746_57	PHROG	phrog_14030	NA	unknown function
UHGV-0144746_57	UniRef90	UniRef90_A0A1C5M3C8	Autolysin	NA
UHGV-0144746_57	eggNOG-mapper	411461.DORFOR_00720	NA	NA
UHGV-0144746_57	Structural annotation	PF18342, NF041850, COG4991	NA	NA