UHGV-0144895

Genome information

Genome length 34,406 bps

CDS count 51

Completeness 83.34% (medium-quality)

geNomad score 0.9742

Prediction confidence Confident

Genome information
Genome ID	UHGV-0144895
vOTU ID	vOTU-032422
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_394842
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.34% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	28
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9742
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	75.89
Jumbo phage	No

Genome content
Genome length	34,406 bps
GC content	50.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	88.60%
Average CDS length	603.94 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0144895_1	KOfam	K14059	int; integrase	NA
UHGV-0144895_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0144895_1	UniRef90	UniRef90_A0A653FUM6	Integrase	NA
UHGV-0144895_1	eggNOG-mapper	716541.ECL_02721	Belongs to the 'phage' integrase family	NA
UHGV-0144895_1	Pfam	PF12167	Arm DNA-binding domain	Arm-DNA-bind_2
UHGV-0144895_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0144895_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0144895_1	Structural annotation	PF00589, PF12167, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0144895_2	PHROG	phrog_539	excisionase	integration and excision
UHGV-0144895_2	UniRef90	UniRef90_UPI001903EDC6	excisionase family protein	NA
UHGV-0144895_2	eggNOG-mapper	716541.ECL_02720	NA	NA
UHGV-0144895_2	Pfam	PF06806	NA	DUF1233
UHGV-0144895_2	Structural annotation	PF06806	NA	NA
UHGV-0144895_3	PHROG	phrog_6158	NA	unknown function
UHGV-0144895_3	Structural annotation	PF15188, TIGR02436	NA	NA
UHGV-0144895_4	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0144895_4	UniRef90	UniRef90_A0A2T1LJG9	ORF6N domain-containing protein	NA
UHGV-0144895_4	eggNOG-mapper	1197719.A464_2045	ORF6N domain	NA
UHGV-0144895_4	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0144895_4	Structural annotation	PF10543, TIGR02681, COG3561	NA	NA
UHGV-0144895_5	PHROG	phrog_1515	NA	unknown function
UHGV-0144895_5	UniRef90	UniRef90_A0A8G2A1K7	2-polyprenylphenol hydroxylase related flavodoxin oxidoreductase	NA
UHGV-0144895_5	eggNOG-mapper	716541.ECL_02717	NA	NA
UHGV-0144895_5	Structural annotation	PF17345	NA	NA
UHGV-0144895_6	PHROG	phrog_1886	NA	unknown function
UHGV-0144895_6	eggNOG-mapper	716541.ECL_02716	NA	NA
UHGV-0144895_7	PHROG	phrog_1525	NA	unknown function
UHGV-0144895_7	eggNOG-mapper	371042.NG99_17025	NA	NA
UHGV-0144895_8	PHROG	phrog_1737	NA	unknown function
UHGV-0144895_8	eggNOG-mapper	716541.ECL_02715	NA	NA
UHGV-0144895_8	Structural annotation	PF17345	NA	NA
UHGV-0144895_9	PHROG	phrog_8959	NA	unknown function
UHGV-0144895_9	Structural annotation	TIGR01280	NA	NA
UHGV-0144895_10	PHROG	phrog_6201	NA	unknown function
UHGV-0144895_10	UniRef90	UniRef90_F5RYZ5	S24 family peptidase	NA
UHGV-0144895_10	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0144895_10	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0144895_10	Structural annotation	PF00717, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0144895_11	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0144895_11	PHROG	phrog_4836	CII-like regulator	transcription regulation
UHGV-0144895_11	UniRef90	UniRef90_A0A837F7Q1	HTH cro/C1-type domain-containing protein	NA
UHGV-0144895_11	eggNOG-mapper	1423734.JCM14202_2731	Helix-turn-helix XRE-family like proteins	NA
UHGV-0144895_11	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0144895_11	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0144895_12	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0144895_12	PHROG	phrog_6201	NA	unknown function
UHGV-0144895_12	UniRef90	UniRef90_A0A6M1DMY1	Helix-turn-helix transcriptional regulator	NA
UHGV-0144895_12	eggNOG-mapper	716541.ECL_02713	phage repressor	NA
UHGV-0144895_12	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0144895_12	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0144895_12	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0144895_13	UniRef90	UniRef90_A0A7W3GUI0	Transcriptional regulator	NA
UHGV-0144895_13	eggNOG-mapper	406818.XBJ1_3974	NA	NA
UHGV-0144895_13	Structural annotation	PF01381, NF041677, COG4197	NA	NA
UHGV-0144895_14	PHROG	phrog_4617	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0144895_14	UniRef90	UniRef90_UPI001CF93925	transcriptional regulator	NA
UHGV-0144895_15	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0144895_15	UniRef90	UniRef90_A0A263VNF7	Helix-turn-helix domain-containing protein	NA
UHGV-0144895_15	eggNOG-mapper	1399774.JDWH01000024_gene4224	Helix-turn-helix domain	NA
UHGV-0144895_15	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0144895_15	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0144895_15	Structural annotation	PF13730, MF_01909, TIGR01610, COG5529	NA	NA
UHGV-0144895_16	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0144895_16	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0144895_16	UniRef90	UniRef90_A0A8B3V4D0	DNA replication protein DnaC	NA
UHGV-0144895_16	eggNOG-mapper	1399774.JDWH01000024_gene4225	DNA replication protein	NA
UHGV-0144895_16	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0144895_16	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0144895_16	Structural annotation	PF01695, MF_01919, NF005931, COG1484	NA	NA
UHGV-0144895_17	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0144895_17	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0144895_17	UniRef90	UniRef90_A0A1Z3MTP9	DNA helicase	NA
UHGV-0144895_17	eggNOG-mapper	1399774.JDWH01000024_gene4226	DnaB-like helicase N terminal domain	NA
UHGV-0144895_17	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0144895_17	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0144895_17	COG	COG0305	Replicative DNA helicase	NA
UHGV-0144895_17	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0144895_18	PHROG	phrog_79	anti-termination protein Q-like	transcription regulation
UHGV-0144895_18	UniRef90	UniRef90_UPI0011DFC2B0	NA	NA
UHGV-0144895_18	eggNOG-mapper	35703.DQ02_24175	Antitermination protein Q	NA
UHGV-0144895_18	Pfam	PF06530	Phage antitermination protein Q	Phage_antitermQ
UHGV-0144895_19	Pfam	PF21784	4-fold beta flower protein	Bflower
UHGV-0144895_20	PHROG	phrog_3501	NA	unknown function
UHGV-0144895_20	eggNOG-mapper	90371.CY43_10680	NA	NA
UHGV-0144895_21	PHROG	phrog_5286	NA	unknown function
UHGV-0144895_21	eggNOG-mapper	66269.NL54_19070	NA	NA
UHGV-0144895_21	NCBIFam	NF033230.2	hypothetical protein	NA
UHGV-0144895_21	Structural annotation	NF033230	NA	NA
UHGV-0144895_23	PHROG	phrog_198	holin	lysis
UHGV-0144895_23	UniRef90	UniRef90_UPI000649E73C	phage holin family protein	NA
UHGV-0144895_23	eggNOG-mapper	716541.ECL_01677	Putative phage holin	NA
UHGV-0144895_23	Pfam	PF16931	Putative phage holin	Phage_holin_8
UHGV-0144895_23	Structural annotation	PF16931	NA	NA
UHGV-0144895_24	PHROG	phrog_217	holin	lysis
UHGV-0144895_24	UniRef90	UniRef90_A0A0H3CIV2	Putative prophage membrane protein	NA
UHGV-0144895_24	eggNOG-mapper	906669.G8C7V9_9CAUD	Pfam:Phage_holin_3_7	NA
UHGV-0144895_24	Pfam	PF05449	Putative 3TM holin, Phage_holin_3	Phage_holin_3_7
UHGV-0144895_25	KOfam	K22918	ttsA; typhoid toxin secretion A	NA
UHGV-0144895_25	PHROG	phrog_12853	NA	unknown function
UHGV-0144895_25	UniRef90	UniRef90_A0A0V9JGI2	PG_binding_3 domain-containing protein	NA
UHGV-0144895_25	eggNOG-mapper	911008.GLAD_00552	secretion activating protein	NA
UHGV-0144895_25	Pfam	PF05838	Glycosyl hydrolase 108	Glyco_hydro_108
UHGV-0144895_25	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-0144895_25	COG	COG3926	Lysozyme family protein	NA
UHGV-0144895_25	Structural annotation	PF05838, PF09374, NF040573, COG3926	NA	NA
UHGV-0144895_26	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-0144895_26	eggNOG-mapper	1399774.JDWH01000016_gene3439	NA	NA
UHGV-0144895_28	UniRef90	UniRef90_UPI00079B66D6	Fur-regulated protein	NA
UHGV-0144895_29	PHROG	phrog_1579	glycosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0144895_29	UniRef90	UniRef90_A0A837F8C8	Glycosyltransferase	NA
UHGV-0144895_29	eggNOG-mapper	1147158.K7PKP3_9CAUD	transferase activity	NA
UHGV-0144895_29	Structural annotation	PF03414, PF13641, MF_01520, TIGR03965, NF041524, COG1216, COG1442	NA	NA
UHGV-0144895_30	PHROG	phrog_854	glucosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0144895_30	UniRef90	UniRef90_A0A7I7E0V2	Bacteriophage protein	NA
UHGV-0144895_30	eggNOG-mapper	1399774.JDWH01000046_gene1349	Glycosyl transferase, family 2	NA
UHGV-0144895_30	COG	COG0463	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-0144895_30	Structural annotation	PF03071, TIGR03937, COG3306	NA	NA
UHGV-0144895_31	PHROG	phrog_17731	NA	unknown function
UHGV-0144895_32	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0144895_32	UniRef90	UniRef90_K7PHI2	Terminase small subunit	NA
UHGV-0144895_32	eggNOG-mapper	1147150.K7PHI2_9CAUD	Phage terminase, small subunit	NA
UHGV-0144895_32	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0144895_32	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0144895_32	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0144895_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0144895_33	UniRef90	UniRef90_A0A2P5GP33	Terminase	NA
UHGV-0144895_33	eggNOG-mapper	1147150.K7PKT2_9CAUD	Phage Terminase	NA
UHGV-0144895_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0144895_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0144895_33	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0144895_34	PHROG	phrog_12	portal protein	head and packaging
UHGV-0144895_34	UniRef90	UniRef90_A0A330G3S9	Phage portal protein	NA
UHGV-0144895_34	eggNOG-mapper	1147150.K7PJU5_9CAUD	Phage portal protein	NA
UHGV-0144895_34	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0144895_34	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0144895_34	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0144895_35	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0144895_35	PHROG	phrog_1684	head maturation protease	head and packaging
UHGV-0144895_35	UniRef90	UniRef90_A0A837F7M9	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0144895_35	eggNOG-mapper	1147150.K7PH05_9CAUD	Clp protease	NA
UHGV-0144895_35	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0144895_35	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0144895_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-0144895_36	UniRef90	UniRef90_A0A7H4LWH4	Phage major capsid protein	NA
UHGV-0144895_36	eggNOG-mapper	1147150.K7PM57_9CAUD	peptidase activity	NA
UHGV-0144895_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0144895_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0144895_36	Structural annotation	PF05065, MF_04113, TIGR01554, COG4653	NA	NA
UHGV-0144895_37	PHROG	phrog_5463	NA	unknown function
UHGV-0144895_37	UniRef90	UniRef90_K7PHI6	Head-tail connector I	NA
UHGV-0144895_37	eggNOG-mapper	1399774.JDWH01000034_gene1973	NA	NA
UHGV-0144895_37	Structural annotation	PF01281	NA	NA
UHGV-0144895_38	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0144895_38	UniRef90	UniRef90_A0A385ELR1	Phage gp6-like head-tail connector protein	NA
UHGV-0144895_38	eggNOG-mapper	1399774.JDWH01000034_gene1974	Phage gp6-like head-tail connector protein	NA
UHGV-0144895_38	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0144895_38	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0144895_38	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0144895_39	PHROG	phrog_25	head closure Hc1	connector
UHGV-0144895_39	UniRef90	UniRef90_A0A0M3EWB3	Head-tail adaptor protein	NA
UHGV-0144895_39	eggNOG-mapper	35703.DQ02_21675	head-tail adaptor	NA
UHGV-0144895_39	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0144895_39	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0144895_39	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0144895_39	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0144895_40	PHROG	phrog_23409	NA	unknown function
UHGV-0144895_40	UniRef90	UniRef90_A0A6G4LJN0	HK97 gp10 family phage protein	NA
UHGV-0144895_40	eggNOG-mapper	432201.K7P7Y7_9CAUD	exonuclease activity	NA
UHGV-0144895_40	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0144895_40	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0144895_40	Structural annotation	TIGR01725	NA	NA
UHGV-0144895_41	PHROG	phrog_347	tail terminator	connector
UHGV-0144895_41	UniRef90	UniRef90_UPI000708256F	NA	NA
UHGV-0144895_41	eggNOG-mapper	1147157.K7PM93_9CAUD	NA	NA
UHGV-0144895_41	Pfam	PF11367	NA	DUF3168
UHGV-0144895_41	Structural annotation	PF11367	NA	NA
UHGV-0144895_42	PHROG	phrog_11009	NA	unknown function
UHGV-0144895_42	UniRef90	UniRef90_K7P835	Major tail subunit	NA
UHGV-0144895_42	eggNOG-mapper	1147157.K7PHL2_9CAUD	NA	NA
UHGV-0144895_42	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0144895_42	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0144895_43	PHROG	phrog_14766	tail protein	tail
UHGV-0144895_43	UniRef90	UniRef90_A0A411GER6	Phage tail protein	NA
UHGV-0144895_43	eggNOG-mapper	911008.GLAD_04137	tail assembly chaperone	NA
UHGV-0144895_43	Pfam	PF06222	Phage tail assembly chaperone	Phage_TAC_1
UHGV-0144895_43	Structural annotation	PF06222	NA	NA
UHGV-0144895_44	PHROG	phrog_14766	tail protein	tail
UHGV-0144895_44	UniRef90	UniRef90_A0A6S5JNV0	Phage tail protein	NA
UHGV-0144895_44	eggNOG-mapper	1147157.K7PJX0_9CAUD	NA	NA
UHGV-0144895_44	Pfam	PF13227	NA	DUF4035
UHGV-0144895_44	Structural annotation	PF06223, TIGR01715	NA	NA
UHGV-0144895_45	PHROG	phrog_8436	NA	unknown function
UHGV-0144895_45	UniRef90	UniRef90_A0A5I0M382	Zinc ribbon domain-containing protein	NA
UHGV-0144895_45	eggNOG-mapper	911008.GLAD_04139	zinc-ribbon domain	NA
UHGV-0144895_46	PHROG	phrog_339	tail length tape measure protein	tail
UHGV-0144895_46	UniRef90	UniRef90_UPI0006660293	phage tail tape measure protein	NA
UHGV-0144895_46	eggNOG-mapper	911008.GLAD_04140	tape measure protein	NA
UHGV-0144895_46	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0144895_46	Pfam	PF06120	Tail length tape measure protein	Phage_HK97_TLTM
UHGV-0144895_46	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0144895_46	NCBIFam	TIGR01541.1	phage tail tape measure protein	NA
UHGV-0144895_46	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0144895_46	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-0144895_47	PHROG	phrog_14	minor tail protein	tail
UHGV-0144895_47	UniRef90	UniRef90_K7P828	Minor tail protein	NA
UHGV-0144895_47	eggNOG-mapper	432200.K7P7R1_9CAUD	Phage minor tail protein	NA
UHGV-0144895_47	Pfam	PF05939	Phage minor tail protein	Phage_min_tail
UHGV-0144895_47	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0144895_48	PHROG	phrog_18	minor tail protein	tail
UHGV-0144895_48	UniRef90	UniRef90_Q9MCS1	Gp18	NA
UHGV-0144895_48	eggNOG-mapper	906668.G8C7J7_9CAUD	Phage minor tail protein L	NA
UHGV-0144895_48	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0144895_48	NCBIFam	TIGR01600.1	phage minor tail protein L	NA
UHGV-0144895_48	Structural annotation	PF05100, TIGR01600, COG4672	NA	NA
UHGV-0144895_49	KOfam	K21140	mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6]	NA
UHGV-0144895_49	PHROG	phrog_30	minor tail protein	tail
UHGV-0144895_49	UniRef90	UniRef90_A0A7Z8BXK9	Peptidase P60	NA
UHGV-0144895_49	eggNOG-mapper	1147157.K7PJX1_9CAUD	peptidoglycan catabolic process	NA
UHGV-0144895_49	Pfam	PF14464	Prokaryotic homologs of the JAB domain	Prok-JAB
UHGV-0144895_49	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0144895_49	Structural annotation	PF14464, PF00877, NF041370, TIGR02219, COG1310, COG0791	NA	NA
UHGV-0144895_50	PHROG	phrog_914	NA	unknown function
UHGV-0144895_50	eggNOG-mapper	35703.DQ02_13915	NA	NA
UHGV-0144895_50	Structural annotation	PF12092	NA	NA
UHGV-0144895_51	PHROG	phrog_32	tail assembly protein	tail
UHGV-0144895_51	UniRef90	UniRef90_A0A514VJ22	Tail assembly protein	NA
UHGV-0144895_51	eggNOG-mapper	10742.Q77W98_BPHK0	virus tail assembly	NA