UHGV-0144913

Genome information

Genome length 32,294 bps

CDS count 48

Completeness 89.92% (medium-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-0144913
vOTU ID	vOTU-030636
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_440005
BioSample	SAMN05971605
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.92% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.41
Jumbo phage	No

Genome content
Genome length	32,294 bps
GC content	43.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	95.02%
Average CDS length	643.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0144913_3	PHROG	phrog_6058	NA	unknown function
UHGV-0144913_3	UniRef90	UniRef90_UPI0018F716FF	helix-turn-helix domain-containing protein	NA
UHGV-0144913_3	Structural annotation	PF12728, NF033787	NA	NA
UHGV-0144913_4	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0144913_4	PHROG	phrog_17417	NA	unknown function
UHGV-0144913_4	UniRef90	UniRef90_A0A3R6XAL2	Cell wall hydrolase	NA
UHGV-0144913_4	eggNOG-mapper	476272.RUMHYD_01702	Cell Wall Hydrolase	NA
UHGV-0144913_4	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0144913_4	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0144913_4	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0144913_5	PHROG	phrog_4292	NA	unknown function
UHGV-0144913_6	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0144913_6	eggNOG-mapper	1235793.C809_03589	NA	NA
UHGV-0144913_6	Structural annotation	PF21578	NA	NA
UHGV-0144913_7	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0144913_7	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0144913_7	UniRef90	UniRef90_A0A371JBV7	RNase H type-1 domain-containing protein	NA
UHGV-0144913_7	eggNOG-mapper	882.DVU_0689	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0144913_7	Pfam	PF00075	RNase H	RNase_H
UHGV-0144913_7	COG	COG0328	Ribonuclease HI	NA
UHGV-0144913_7	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0144913_8	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0144913_9	PHROG	phrog_4433	NA	unknown function
UHGV-0144913_9	eggNOG-mapper	1235799.C818_00267	regulation of DNA-templated transcription, elongation	NA
UHGV-0144913_9	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0144913_9	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0144913_10	PHROG	phrog_8470	NA	unknown function
UHGV-0144913_10	UniRef90	UniRef90_A0A1I3G898	PcfJ-like protein	NA
UHGV-0144913_10	eggNOG-mapper	742733.HMPREF9469_00219	PcfJ-like protein	NA
UHGV-0144913_10	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0144913_10	Structural annotation	PF14284	NA	NA
UHGV-0144913_12	PHROG	phrog_15077	NA	unknown function
UHGV-0144913_12	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-0144913_13	PHROG	phrog_24368	NA	unknown function
UHGV-0144913_14	PHROG	phrog_7566	NA	unknown function
UHGV-0144913_14	eggNOG-mapper	483218.BACPEC_01171	NA	NA
UHGV-0144913_17	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0144913_17	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0144913_18	eggNOG-mapper	1235790.C805_00061	NA	NA
UHGV-0144913_19	PHROG	phrog_5992	NA	unknown function
UHGV-0144913_19	eggNOG-mapper	1052684.PPM_2787	NA	NA
UHGV-0144913_20	eggNOG-mapper	1235792.C808_01244	NA	NA
UHGV-0144913_21	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0144913_21	PHROG	phrog_1	integrase	integration and excision
UHGV-0144913_21	UniRef90	UniRef90_UPI00084915C6	tyrosine-type recombinase/integrase	NA
UHGV-0144913_21	eggNOG-mapper	1304866.K413DRAFT_1209	Belongs to the 'phage' integrase family	NA
UHGV-0144913_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0144913_21	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0144913_21	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0144913_22	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0144913_22	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0144913_22	UniRef90	UniRef90_A0A355VXH1	HicB family protein	NA
UHGV-0144913_22	eggNOG-mapper	1410609.JHVB01000004_gene464	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0144913_22	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0144913_22	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0144913_22	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0144913_23	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0144913_23	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0144913_23	UniRef90	UniRef90_A0A173T1A3	YcfA-like protein	NA
UHGV-0144913_23	eggNOG-mapper	1235835.C814_03453	NA	NA
UHGV-0144913_23	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0144913_23	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0144913_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0144913_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0144913_24	UniRef90	UniRef90_A0A7U9RA29	Single-stranded DNA-binding protein	NA
UHGV-0144913_24	eggNOG-mapper	397288.C806_03901	Single-strand binding protein family	NA
UHGV-0144913_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0144913_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0144913_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0144913_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0144913_24	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0144913_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0144913_25	UniRef90	UniRef90_A0A371AT86	NA	NA
UHGV-0144913_25	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0144913_26	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0144913_26	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0144913_26	UniRef90	UniRef90_R6C1K3	HNH endonuclease domain protein	NA
UHGV-0144913_26	eggNOG-mapper	1243664.CAVL020000054_gene3029	HNH endonuclease	NA
UHGV-0144913_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0144913_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0144913_27	PHROG	phrog_1066	NA	unknown function
UHGV-0144913_27	eggNOG-mapper	1203606.HMPREF1526_01333	NA	NA
UHGV-0144913_27	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0144913_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0144913_28	UniRef90	UniRef90_UPI001C01D82C	terminase large subunit	NA
UHGV-0144913_28	eggNOG-mapper	1160721.RBI_I01585	large subunit	NA
UHGV-0144913_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0144913_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0144913_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0144913_28	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0144913_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0144913_29	UniRef90	UniRef90_R6CVK3	HK97 family phage portal protein	NA
UHGV-0144913_29	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-0144913_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0144913_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0144913_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0144913_30	KOfam	K06904	NA	NA
UHGV-0144913_30	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0144913_30	UniRef90	UniRef90_R6CCZ0	Phage prohead protease HK97 family	NA
UHGV-0144913_30	eggNOG-mapper	324057.Pjdr2_1542	Caudovirus prohead serine protease	NA
UHGV-0144913_30	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0144913_30	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0144913_30	COG	COG3740	Phage head maturation protease	NA
UHGV-0144913_30	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0144913_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0144913_31	UniRef90	UniRef90_UPI001C038412	phage major capsid protein	NA
UHGV-0144913_31	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0144913_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0144913_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0144913_31	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0144913_33	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0144913_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0144913_34	UniRef90	UniRef90_R6CVJ7	HK97 gp10 family phage protein	NA
UHGV-0144913_34	eggNOG-mapper	1235793.C809_01923	NA	NA
UHGV-0144913_34	Structural annotation	TIGR01725	NA	NA
UHGV-0144913_35	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0144913_36	PHROG	phrog_88	major tail protein	tail
UHGV-0144913_36	UniRef90	UniRef90_UPI001C03410D	chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-0144913_36	eggNOG-mapper	1235793.C809_01925	phage major tail protein, phi13 family	NA
UHGV-0144913_36	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0144913_36	COG	COG5492	NA	NA
UHGV-0144913_36	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0144913_37	eggNOG-mapper	1235792.C808_03058	NA	NA
UHGV-0144913_37	Structural annotation	PF11836	NA	NA
UHGV-0144913_39	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0144913_39	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0144913_39	UniRef90	UniRef90_A0A417QIC1	Phage tail tape measure protein	NA
UHGV-0144913_39	eggNOG-mapper	1235793.C809_01928	nuclear chromosome segregation	NA
UHGV-0144913_39	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0144913_39	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0144913_39	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0144913_39	Structural annotation	PF10145, PF16454, TIGR01760, COG5280	NA	NA
UHGV-0144913_40	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0144913_40	UniRef90	UniRef90_A0A417QI91	Phage tail family protein	NA
UHGV-0144913_40	eggNOG-mapper	536232.CLM_2922	Phage tail protein	NA
UHGV-0144913_40	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0144913_40	COG	COG4722	Phage-related protein YomH	NA
UHGV-0144913_40	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0144913_41	PHROG	phrog_538	minor tail protein	tail
UHGV-0144913_41	UniRef90	UniRef90_UPI0015C5E26D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0144913_41	eggNOG-mapper	536232.CLM_2044	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0144913_41	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0144913_41	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0144913_42	PHROG	phrog_1220	head protein	head and packaging
UHGV-0144913_42	UniRef90	UniRef90_UPI000C7676C6	methyl-accepting chemotaxis protein	NA
UHGV-0144913_42	eggNOG-mapper	1211817.CCAT010000079_gene1381	COG NOG18825 non supervised orthologous group	NA
UHGV-0144913_42	Structural annotation	PF20747	NA	NA
UHGV-0144913_44	UniRef90	UniRef90_A0A373D4R3	Acyl carrier protein	NA
UHGV-0144913_44	eggNOG-mapper	397291.C804_01137	NA	NA
UHGV-0144913_44	Structural annotation	PF14301	NA	NA
UHGV-0144913_45	PHROG	phrog_20274	NA	unknown function
UHGV-0144913_45	UniRef90	UniRef90_J1H3V1	PF06541 domain protein	NA
UHGV-0144913_45	eggNOG-mapper	1105031.HMPREF1141_3093	Putative ABC-transporter type IV	NA
UHGV-0144913_45	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0144913_45	COG	COG4905	NA	NA
UHGV-0144913_45	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0144913_46	PHROG	phrog_937	hemolysin	other
UHGV-0144913_47	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-0144913_48	KOfam	K07273	acm; lysozyme	NA
UHGV-0144913_48	PHROG	phrog_291	endolysin	lysis
UHGV-0144913_48	UniRef90	UniRef90_A0A7U9QWG5	Autolytic lysozyme	NA
UHGV-0144913_48	eggNOG-mapper	1415775.U729_2621	Glycosyl hydrolases family 25	NA
UHGV-0144913_48	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0144913_48	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0144913_48	COG	COG3103	NA	NA
UHGV-0144913_48	Structural annotation	PF01183, PF08230, COG3757	NA	NA